Symbiotic microbiomes of Sphagnum have been confirmed to play a fundamental role in carbon and nitrogen cycles, however, little is known about microbiomes associated with other bryophytes in subtropical peatland ecosy...Symbiotic microbiomes of Sphagnum have been confirmed to play a fundamental role in carbon and nitrogen cycles, however, little is known about microbiomes associated with other bryophytes in subtropical peatland ecosystems. To explore the differences in community structure, metabolic potential and interaction relationship of bacterial microbiomes associated with different bryophytes species, the gametophytes of three bryophyte species(Sphagnum palustre, Aulacomnium androgynum, and Polytrichum commune) and their underlying peat sediments were collected from the subtropical Dajiuhu Peatland and subjected to Illumina high-throughout sequencing of 16S r RNA gene. Results showed that bacterial diversity was lowest in S. palustre, the dominant moss species, among the three moss species investigated in Dajiuhu Peatland. Bacterial communities from bryophytes clearly separated with those from sediments as indicated by both phylogenetic and taxonomical approaches. Linear discriminant analysis effect size(LEf Se) identified 30 and 36 indicator taxa in mosses and peat sediments. Bacteroidetes, Verrucomicrobia and Thermoleophilia significantly enriched in S. palustre, A. androgynum and P. commune, Chloroflexi, Proteobacteria and Acidobacteria subgroup 6 was indicator taxa for corresponding underlying sediments, respectively. Despite of these differences in compositions, bacterial functional structures were similar among all bryophytes, such as abundant aerobic heterotrophs, rare nitrifiers and denitrifiers. This phenomenon was also observed among the underlying sediments. Network analysis indicated that Proteobacteria and Acidobacteria located in the center of network and exerted strong interactions to other taxa. The sub-network of bacterial communities in sediments was more connected and microbial groups were more competitive than those in bryophytes subnetwork. Our results offer new insight into the community structure, ecological function and interaction pattern of bacterial microbiomes in the Dajiuhu Peatland across different habitats.展开更多
This study investigates the testate amoeba communities of a large peatland in Central China. The ecology and seasonal variability of testate amoeba communities were studied during 2009-2010. Investiga- tion of environ...This study investigates the testate amoeba communities of a large peatland in Central China. The ecology and seasonal variability of testate amoeba communities were studied during 2009-2010. Investiga- tion of environmental controls using ordination showed that the relationship between testate amoeba communities and depth to water table (DWT) and pH are extremely weak. The small proportion of variance explained by water table depth here (only 1.9% in the full data) shows that the hydrological control is weaker than we expected in this peatland, and weaker than any study we are aware of using a similar methodology. Attempts to develop species- environment (transfer function) models or identify indi- cator species for future palaeoecological studies were unsuccessful. Previous large-scale studies of peatland testate amoeba ecology have been largely restricted to Europe and North America and results have been relatively consistent among studies. Our results contrast with this consensus and suggest that at least in minerotrophic peatlands in China testate amoeba communities may be primarily controlled by different environmental variables. In China, testate amoebae have been relatively little studied but may prove to be valuable for a variety of applications in palaeoecology and biomonitoring and much further work is required.展开更多
To investigate the microbial utilization of organic carbon in peatland ecosystem, water samples were collected from the Dajiuhu Peatland and nearby lakes, central China across the year of 2014. The acridine orange (A...To investigate the microbial utilization of organic carbon in peatland ecosystem, water samples were collected from the Dajiuhu Peatland and nearby lakes, central China across the year of 2014. The acridine orange (AO) staining and Biolog Eco microplates were used to numerate microbial counts and determine the carbon utilization of microbial communities. Meanwhile, physicochemical characteristics were measured for subsequent analysis of the correlation between microbial carbon utilization and environmental factors. Results indicated that total microbial counts were between 106107 cells/L. Microbial diversities and carbon utilization rates showed a similar pattern, highest in September and lowest in November. Microbial communities in the peat pore waters preferred to utilize N-bearing carbon sources such as amines and amino acids compared with microbial communities in lakes. The network analysis of microbial utilization of 31 carbon substrates clearly distinguished microbial communities from peat pore waters and those from lakes. Redundancy analysis (RDA) showed the total organic nitrogen content (P=-0.03, F=2.5) and daily average temperature (P=0.034, F=2.4) significantly controlled microbial carbon utilization throughout the sampling period. Our report is the first one to address the temporal and spatial variations of carbon uti- lization of microbial communities which are closely related to the decomposition of organic matter in the Dajiuhu Peatland in context of climate warming.展开更多
To investigate vertical changes of bacterial communities from living plants to the associated sediments and bacterial biogeochemical roles in peatland ecosystem,samples of different part of individual Sphagnum palustr...To investigate vertical changes of bacterial communities from living plants to the associated sediments and bacterial biogeochemical roles in peatland ecosystem,samples of different part of individual Sphagnum palustre and the different layers of the underlying sediments were collected from Dajiuhu Peatland in central China.All samples were subject to 16S rRNA gene clone libraries and quantitative PCR analysis.Even though bacteria vary in abundance at the same order of magnitude in all samples,they show great profile difference in composition from the top part of S.palustre to the low layer of the sediments.Cyanobacteria and alpha-Proteobacteria dominate at the top part whereas Acidobacteria at the middle part of S.palustre.Alpha-Proteobacteria and Acidobacteria are the dominant phyla at the bottom part of S.palustre and in the surface peat sediment.In contrast,bacterial communities in the subsurface sediments are dominated by Acidobacteria.These profile distributions of different bacterial communities are closely related to their ecological functions in the peatland ecosystem.Specifically,most Cyanobacteria were observed at the top green part of S.palustre,a horizon where the active photosynthesis of the moss occurs,which infers their endosymbiosis.In contrast,Acidobacteria,dominant in the subsurface sediments,are able to decompose the specific compounds on the cell wall of Sphagnum moss and thus might play an important role in the formation of the peatland,including the acidic condition.Methane oxidizing process might have been underestimated in Sphagnum peatland due to the identification of Methylocystaceae in all parts of the moss investigated here.The vertical difference in bacterial composition and bacterial ecological functions presented here sheds light on the understanding of biogeochemical processes,in particular the CH4 flux,in peat ecosystems.展开更多
Peatland ecosystems play an important role in the global carbon cycle because they act as a pool or sink for the carbon cycle. However, the relationship between seasonality effect factors and net ecosystem CO<sub&g...Peatland ecosystems play an important role in the global carbon cycle because they act as a pool or sink for the carbon cycle. However, the relationship between seasonality effect factors and net ecosystem CO<sub>2</sub> exchange (NEE) remains to be clarified, particularly for the non-growing season. Here, based on the eddy covariance technique, NEE in the peatland ecosystem of Central China was examined to measure two years’ (2016 and 2017) accumulation of carbon dioxide emissions with contrasting seasonal distribution of environmental factors. Our results demonstrate the cumulative net ecosystem CO<sub>2</sub> emissions during the study period was in the first non-growing season 2.94 ± 4.83 μmolCO<sub>2</sub> m<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>2<span style="white-space:nowrap;">.</span></sup>s<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>1</sup> with the lowest values in the same year in first growing season was <span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>2.79 ± 4.92 μmolCO<sub>2</sub> m<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>2</sup><span style="font-family:" font-size:13.3333px;white-space:normal;"=""><span style="white-space:nowrap;"><sup>.</sup></span></span>s<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>1</sup>. The results indicate the effect of seasonal variations of NEE can be directly reflected in daily and seasonal variations in growth and respiration of peatland ecosystem by environmental parameters over different growing stages.展开更多
基金jointly supported by National Natural Science Foundation of China (No. 41572325)China University of Geosciences (Wuhan) (Nos. CUGCJ1703 and CUGQY1922)。
文摘Symbiotic microbiomes of Sphagnum have been confirmed to play a fundamental role in carbon and nitrogen cycles, however, little is known about microbiomes associated with other bryophytes in subtropical peatland ecosystems. To explore the differences in community structure, metabolic potential and interaction relationship of bacterial microbiomes associated with different bryophytes species, the gametophytes of three bryophyte species(Sphagnum palustre, Aulacomnium androgynum, and Polytrichum commune) and their underlying peat sediments were collected from the subtropical Dajiuhu Peatland and subjected to Illumina high-throughout sequencing of 16S r RNA gene. Results showed that bacterial diversity was lowest in S. palustre, the dominant moss species, among the three moss species investigated in Dajiuhu Peatland. Bacterial communities from bryophytes clearly separated with those from sediments as indicated by both phylogenetic and taxonomical approaches. Linear discriminant analysis effect size(LEf Se) identified 30 and 36 indicator taxa in mosses and peat sediments. Bacteroidetes, Verrucomicrobia and Thermoleophilia significantly enriched in S. palustre, A. androgynum and P. commune, Chloroflexi, Proteobacteria and Acidobacteria subgroup 6 was indicator taxa for corresponding underlying sediments, respectively. Despite of these differences in compositions, bacterial functional structures were similar among all bryophytes, such as abundant aerobic heterotrophs, rare nitrifiers and denitrifiers. This phenomenon was also observed among the underlying sediments. Network analysis indicated that Proteobacteria and Acidobacteria located in the center of network and exerted strong interactions to other taxa. The sub-network of bacterial communities in sediments was more connected and microbial groups were more competitive than those in bryophytes subnetwork. Our results offer new insight into the community structure, ecological function and interaction pattern of bacterial microbiomes in the Dajiuhu Peatland across different habitats.
基金Acknowledgements This work was supported by the National Basic Research Program of China (No. 2011CB808800), the National Natural Science Foundation of China (Grant Nos. 40930210, 40921062, 40872202, 41072261 and 30800097), the Opening Research Fund of Key Laboratory of Wetland Ecology and Environment (No. WELF-2009-B-003), the Special Fund for Basic Scientific Research of Central Colleges, China University of Geosciences (Wuhan) (Nos. CUG090103 and G1323521132), and the 111 Project (No. B08030). Professor Robert K. Booth and Professor Edward A.D. Mitchell helped with species identifications, Professor Booth also helped withinitial statistical analysis and constructive comments on the research. We thank Jiantao Xue, Ze Zhang, Huan Yang and Zhiqi Zhang for their assistance of field works. Qianfan Zhang and Rong Zhu helped dealing with the processing of samples in the laboratory.
文摘This study investigates the testate amoeba communities of a large peatland in Central China. The ecology and seasonal variability of testate amoeba communities were studied during 2009-2010. Investiga- tion of environmental controls using ordination showed that the relationship between testate amoeba communities and depth to water table (DWT) and pH are extremely weak. The small proportion of variance explained by water table depth here (only 1.9% in the full data) shows that the hydrological control is weaker than we expected in this peatland, and weaker than any study we are aware of using a similar methodology. Attempts to develop species- environment (transfer function) models or identify indi- cator species for future palaeoecological studies were unsuccessful. Previous large-scale studies of peatland testate amoeba ecology have been largely restricted to Europe and North America and results have been relatively consistent among studies. Our results contrast with this consensus and suggest that at least in minerotrophic peatlands in China testate amoeba communities may be primarily controlled by different environmental variables. In China, testate amoebae have been relatively little studied but may prove to be valuable for a variety of applications in palaeoecology and biomonitoring and much further work is required.
基金supported by the National Natural Science Foundation of China(Nos. 41572325 and 41130207)
文摘To investigate the microbial utilization of organic carbon in peatland ecosystem, water samples were collected from the Dajiuhu Peatland and nearby lakes, central China across the year of 2014. The acridine orange (AO) staining and Biolog Eco microplates were used to numerate microbial counts and determine the carbon utilization of microbial communities. Meanwhile, physicochemical characteristics were measured for subsequent analysis of the correlation between microbial carbon utilization and environmental factors. Results indicated that total microbial counts were between 106107 cells/L. Microbial diversities and carbon utilization rates showed a similar pattern, highest in September and lowest in November. Microbial communities in the peat pore waters preferred to utilize N-bearing carbon sources such as amines and amino acids compared with microbial communities in lakes. The network analysis of microbial utilization of 31 carbon substrates clearly distinguished microbial communities from peat pore waters and those from lakes. Redundancy analysis (RDA) showed the total organic nitrogen content (P=-0.03, F=2.5) and daily average temperature (P=0.034, F=2.4) significantly controlled microbial carbon utilization throughout the sampling period. Our report is the first one to address the temporal and spatial variations of carbon uti- lization of microbial communities which are closely related to the decomposition of organic matter in the Dajiuhu Peatland in context of climate warming.
基金supported by National Natural Science Foundation of China(Grant Nos.41072253,41130207)Special Funds for Basic Scientific Research of Central Colleges,China University of Geosciences(Wuhan)(Grant No.CUG120103)
文摘To investigate vertical changes of bacterial communities from living plants to the associated sediments and bacterial biogeochemical roles in peatland ecosystem,samples of different part of individual Sphagnum palustre and the different layers of the underlying sediments were collected from Dajiuhu Peatland in central China.All samples were subject to 16S rRNA gene clone libraries and quantitative PCR analysis.Even though bacteria vary in abundance at the same order of magnitude in all samples,they show great profile difference in composition from the top part of S.palustre to the low layer of the sediments.Cyanobacteria and alpha-Proteobacteria dominate at the top part whereas Acidobacteria at the middle part of S.palustre.Alpha-Proteobacteria and Acidobacteria are the dominant phyla at the bottom part of S.palustre and in the surface peat sediment.In contrast,bacterial communities in the subsurface sediments are dominated by Acidobacteria.These profile distributions of different bacterial communities are closely related to their ecological functions in the peatland ecosystem.Specifically,most Cyanobacteria were observed at the top green part of S.palustre,a horizon where the active photosynthesis of the moss occurs,which infers their endosymbiosis.In contrast,Acidobacteria,dominant in the subsurface sediments,are able to decompose the specific compounds on the cell wall of Sphagnum moss and thus might play an important role in the formation of the peatland,including the acidic condition.Methane oxidizing process might have been underestimated in Sphagnum peatland due to the identification of Methylocystaceae in all parts of the moss investigated here.The vertical difference in bacterial composition and bacterial ecological functions presented here sheds light on the understanding of biogeochemical processes,in particular the CH4 flux,in peat ecosystems.
文摘Peatland ecosystems play an important role in the global carbon cycle because they act as a pool or sink for the carbon cycle. However, the relationship between seasonality effect factors and net ecosystem CO<sub>2</sub> exchange (NEE) remains to be clarified, particularly for the non-growing season. Here, based on the eddy covariance technique, NEE in the peatland ecosystem of Central China was examined to measure two years’ (2016 and 2017) accumulation of carbon dioxide emissions with contrasting seasonal distribution of environmental factors. Our results demonstrate the cumulative net ecosystem CO<sub>2</sub> emissions during the study period was in the first non-growing season 2.94 ± 4.83 μmolCO<sub>2</sub> m<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>2<span style="white-space:nowrap;">.</span></sup>s<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>1</sup> with the lowest values in the same year in first growing season was <span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>2.79 ± 4.92 μmolCO<sub>2</sub> m<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>2</sup><span style="font-family:" font-size:13.3333px;white-space:normal;"=""><span style="white-space:nowrap;"><sup>.</sup></span></span>s<sup><span style="color:#4F4F4F;font-family:" font-size:14px;white-space:normal;background-color:#ffffff;"="">-</span>1</sup>. The results indicate the effect of seasonal variations of NEE can be directly reflected in daily and seasonal variations in growth and respiration of peatland ecosystem by environmental parameters over different growing stages.