Decapterus maruadsi is a commercially important species in China, but has been heavily exploited in some areas. There is a growing need to develop microsatellites promoting its genetic research for the adequate manage...Decapterus maruadsi is a commercially important species in China, but has been heavily exploited in some areas. There is a growing need to develop microsatellites promoting its genetic research for the adequate management of this ?shery resources. The recently developed speci?c-locus ampli?ed fragment sequencing(SLAF-seq) is an effcient and high-resolution method for genome-wide microsatellite markers discovery. In this study, 28 905 microsatellites(mono-to hexa-nucleotide repeats) were identi?ed using SLAF-seq technology, of which di-nucleotide was the most frequent(13 590, 47.02%), followed by mono-nucleotide(8 138, 28.15%), tri-nucleotide(5 727, 19.81%), tetra-nucleotide(1 104, 3.82%), pentanucleotide(234, 0.81%), and hexa-nucleotide(112, 0.39%). One hundred and thirty-two microsatellite loci(di-and tri-nucleotide) were randomly selected for ampli?cation and polymorphism, of which 49 were highly polymorphic and well-resolved. The average number of alleles per locus was 13.63, ranging from 4 to 25, and allele sizes varied between 110 bp and 309 bp. The observed heterozygosity( Ho) and expected heterozygosity( He) ranged from 0.233 to 1.000 and from 0.374 to 0.959, with mean values of 0.738 and0.836, respectively. The polymorphism information content(PIC) ranged from 0.341 to 0.941(mean=0.806).However, 12 loci deviated from Hardy-Weinberg equilibrium. Furthermore, transferability tests were also successful in validating the utility of the developed markers in ?ve phylogenetically related species of family Carangidae. A total of 48 microsatellite markers were successfully cross-ampli?ed in Decapterus macarellus, Decapterus macrosoma, Decapterus kurroides, Trachurus japonicus, and Selaroides leptolepis.The present microsatellites provided the ?rst known set of microsatellite DNA markers for D. maruadsi,D. macarellus, D. kurroides, and D. macrosoma, and would be useful for further population genetic and molecular phylogeny studies as well as help with the ?sheries management formulation and implementation of the understudied species.展开更多
Fishes of the family Carangidae, Decapterus macarellus, Decapterus macrosoma, and Decapterus russelli, were collected from the Jordanian Aqaba coast during 2008-2009 for the determination of their metal concentrations...Fishes of the family Carangidae, Decapterus macarellus, Decapterus macrosoma, and Decapterus russelli, were collected from the Jordanian Aqaba coast during 2008-2009 for the determination of their metal concentrations in various organs (muscle, liver, kidney, gonads, gills, and stomach food contents) using flame atomic absorption spectrometry (AAS). The results showed significant differences in metal concentration between species. The present study indicated significant differences of heavy metal elements among different organs of the same species. The results did not reveal any significant differences between male and female organs, and the only significant difference were found for Pb in Decapterus macorsoma and for Cu in Decapterus russelli. The low metal concentrations found in muscle tissue (in all studied species) has implications for human health.展开更多
基金Supported by the PhD Start-up Fund of Guangdong Provincial Natural Science Foundation(No.2016A030310329)the Special Program for Outstanding Young Teachers of Guangdong Ocean University(No.HDYQ2017002)+1 种基金the National Natural Science Foundation of China(No.31372532)the Program for Scientific Research Start-up Funds of Guangdong Ocean University(No.R17040)
文摘Decapterus maruadsi is a commercially important species in China, but has been heavily exploited in some areas. There is a growing need to develop microsatellites promoting its genetic research for the adequate management of this ?shery resources. The recently developed speci?c-locus ampli?ed fragment sequencing(SLAF-seq) is an effcient and high-resolution method for genome-wide microsatellite markers discovery. In this study, 28 905 microsatellites(mono-to hexa-nucleotide repeats) were identi?ed using SLAF-seq technology, of which di-nucleotide was the most frequent(13 590, 47.02%), followed by mono-nucleotide(8 138, 28.15%), tri-nucleotide(5 727, 19.81%), tetra-nucleotide(1 104, 3.82%), pentanucleotide(234, 0.81%), and hexa-nucleotide(112, 0.39%). One hundred and thirty-two microsatellite loci(di-and tri-nucleotide) were randomly selected for ampli?cation and polymorphism, of which 49 were highly polymorphic and well-resolved. The average number of alleles per locus was 13.63, ranging from 4 to 25, and allele sizes varied between 110 bp and 309 bp. The observed heterozygosity( Ho) and expected heterozygosity( He) ranged from 0.233 to 1.000 and from 0.374 to 0.959, with mean values of 0.738 and0.836, respectively. The polymorphism information content(PIC) ranged from 0.341 to 0.941(mean=0.806).However, 12 loci deviated from Hardy-Weinberg equilibrium. Furthermore, transferability tests were also successful in validating the utility of the developed markers in ?ve phylogenetically related species of family Carangidae. A total of 48 microsatellite markers were successfully cross-ampli?ed in Decapterus macarellus, Decapterus macrosoma, Decapterus kurroides, Trachurus japonicus, and Selaroides leptolepis.The present microsatellites provided the ?rst known set of microsatellite DNA markers for D. maruadsi,D. macarellus, D. kurroides, and D. macrosoma, and would be useful for further population genetic and molecular phylogeny studies as well as help with the ?sheries management formulation and implementation of the understudied species.
文摘Fishes of the family Carangidae, Decapterus macarellus, Decapterus macrosoma, and Decapterus russelli, were collected from the Jordanian Aqaba coast during 2008-2009 for the determination of their metal concentrations in various organs (muscle, liver, kidney, gonads, gills, and stomach food contents) using flame atomic absorption spectrometry (AAS). The results showed significant differences in metal concentration between species. The present study indicated significant differences of heavy metal elements among different organs of the same species. The results did not reveal any significant differences between male and female organs, and the only significant difference were found for Pb in Decapterus macorsoma and for Cu in Decapterus russelli. The low metal concentrations found in muscle tissue (in all studied species) has implications for human health.
