【目的】筛选金边也门铁花叶性状相关差异表达基因,为深入探索也门铁叶色形成的分子调控机制打下基础。【方法】基于cDNA扩增片段长度多态性分析技术(cDNA-AFLP),利用64对Eco R I和Mse I选择性扩增引物组合分析金边也门铁叶片绿色与黄...【目的】筛选金边也门铁花叶性状相关差异表达基因,为深入探索也门铁叶色形成的分子调控机制打下基础。【方法】基于cDNA扩增片段长度多态性分析技术(cDNA-AFLP),利用64对Eco R I和Mse I选择性扩增引物组合分析金边也门铁叶片绿色与黄色部分组织cDNA,经筛选、回收、克隆、测序和BLAST比对分析获得差异表达基因。【结果】利用64对引物组合共扩增出1726条可分辨的条带,并获得58条差异表达的转录衍生片段(TDFs),其中12条TDFs为特异性表达。12条特异性TDFs中,5条TDFs具有同源序列,另外7条TDFs无同源序列,为未知功能基因。在叶片黄化部位特异表达同源性为96%的TDFs序列M8E3B-2和M8E3B-3与大丽花花叶病毒Holland包涵体蛋白基因、紫茎泽兰明脉病毒基因、洋丁香黄化卷叶病毒基因等花椰菜花叶病毒科病毒基因具有较高的同源性。【结论】M8E3B-2和M8E3B-3两条TDFs序列或来源于一种花椰菜花叶病毒科病毒基因,且有可能参与了金边也门铁花叶叶色性状的形成过程。展开更多
We examined salt tolerance responsive genes in Pak-choi under salt stress and analyze their potential function. The LRNA differential display was used to screen the transcript derived fragments （TDFs） related to sal...We examined salt tolerance responsive genes in Pak-choi under salt stress and analyze their potential function. The LRNA differential display was used to screen the transcript derived fragments （TDFs） related to salinity tolerance in tolerant and Loderately tolerant Pak-choi germplasm. Seventy-eight primer combinations generated 101 differential eDNA fragments, which ere divided into 10 expression types. Seven cDNA sequences （GenBank accession Nos. DQ006915-DQ006921） obtained and ,~quenced were highly homologous to some known expression genes or the genes related to the signaling pathways in plants under ifferent abiotic stress.展开更多
Gossypium hirsutum L.is an important cash crop native to the subtropics and is widely cultivated around the world.Low temperature is an important stress that seriously affects seed germination and emergence during pla...Gossypium hirsutum L.is an important cash crop native to the subtropics and is widely cultivated around the world.Low temperature is an important stress that seriously affects seed germination and emergence during planting.In this study,transcriptomic profiles of low-temperature-and normal-temperature-germinated seeds of Xinluzao 25,a variety with low-temperature tolerance and high germination rates,were analyzed and compared.The following results were obtained.(1)A total of 81.06 Gb of clean data were obtained after transcriptome sequencing and assembly,and 76,931 non-redundant Unigene sequences were obtained after data consolidation and concatenation;of these,69,883 Unigene sequences were annotated.In addition,55,463 Unigene transcript sequences(72.2%)were annotated for Gene Ontology(GO)classification,and 26,629 genes were involved in 50 metabolic pathways identified by Kyoto Encyclopedia of Genes and Genomes(KEGG)analysis.(2)Three main pathways related to low-temperature tolerance of seed germination were identified:starch and sucrose metabolism,phenylpropanoid biosynthesis,and cysteine and methionine metabolism.Their main molecular functions involve the regulation of abscisic acid and activities of enzymes such as amylase,peroxidase,and oxidoreductase.During germination at low temperature,more genes were down-regulated than up-regulated genes at the protrusion stage(2 mm),and more genes were up-regulated than down-regulated at the germination stage(30 mm)after protrusion.(3)The enzyme activities at the two stages showed that amylase,peroxidase,catalase,and glutathione reductase had higher activities when the seeds germinated at 15℃.In this study,high expression of amylase,peroxidase,catalase,and glutathione reductase genes may be the main cause of increased tolerance to low temperature.展开更多
To understand the molecular mechanism of maize heterosis, differential gene expression patterns in the functional leaves of 35 maize hybrids relative to their parents involving 10 elite inbreds at milk filling stage w...To understand the molecular mechanism of maize heterosis, differential gene expression patterns in the functional leaves of 35 maize hybrids relative to their parents involving 10 elite inbreds at milk filling stage were analyzed by using cDNA-AFLP. The correlation analyses of various differential expression patterns with the performance and heterosis of main maize agronomic traits were evaluated. The main results were as follows: For uniparental specific expression, significant positive correlations were detected with the performance of seed weight per ear and 100-seed weight at 0.01 and 0.05 probability levels respectively. For biparental specific expression, significant negative correla-tions were detected with the performance of ear diameter and seed weight per ear at 0.01 probability level. For uni-parental specific expression, significant positive correlations were detected with the heterosis of ear diameter and seed weight per ear at 0.01 and 0.05 probability levels respectively. For biparental specific expression, significant negative cor-relation was detected with the heterosis of ear diameter at 0.05 probability level. However, for F1-specific expression, for fragments detected only in one parent and F1, and for fragments detected only in two parents or only in F1, no sig-nificant correlation was detected with the performance or heterosis of all agronomic traits surveyed.展开更多
文摘【目的】筛选金边也门铁花叶性状相关差异表达基因,为深入探索也门铁叶色形成的分子调控机制打下基础。【方法】基于cDNA扩增片段长度多态性分析技术(cDNA-AFLP),利用64对Eco R I和Mse I选择性扩增引物组合分析金边也门铁叶片绿色与黄色部分组织cDNA,经筛选、回收、克隆、测序和BLAST比对分析获得差异表达基因。【结果】利用64对引物组合共扩增出1726条可分辨的条带,并获得58条差异表达的转录衍生片段(TDFs),其中12条TDFs为特异性表达。12条特异性TDFs中,5条TDFs具有同源序列,另外7条TDFs无同源序列,为未知功能基因。在叶片黄化部位特异表达同源性为96%的TDFs序列M8E3B-2和M8E3B-3与大丽花花叶病毒Holland包涵体蛋白基因、紫茎泽兰明脉病毒基因、洋丁香黄化卷叶病毒基因等花椰菜花叶病毒科病毒基因具有较高的同源性。【结论】M8E3B-2和M8E3B-3两条TDFs序列或来源于一种花椰菜花叶病毒科病毒基因,且有可能参与了金边也门铁花叶叶色性状的形成过程。
基金Project supported by the National "the Tenth Five-Year-Plan" Key Program (No. 2004BA525B08)China and the Key Laboratory of Vegetable Genetics and Physiology, Ministry of Agriculture, China
文摘We examined salt tolerance responsive genes in Pak-choi under salt stress and analyze their potential function. The LRNA differential display was used to screen the transcript derived fragments （TDFs） related to salinity tolerance in tolerant and Loderately tolerant Pak-choi germplasm. Seventy-eight primer combinations generated 101 differential eDNA fragments, which ere divided into 10 expression types. Seven cDNA sequences （GenBank accession Nos. DQ006915-DQ006921） obtained and ,~quenced were highly homologous to some known expression genes or the genes related to the signaling pathways in plants under ifferent abiotic stress.
基金funded by the Science and Technology Project of Henan Provincial Department of Science and Technology(Item No.222102110282).
文摘Gossypium hirsutum L.is an important cash crop native to the subtropics and is widely cultivated around the world.Low temperature is an important stress that seriously affects seed germination and emergence during planting.In this study,transcriptomic profiles of low-temperature-and normal-temperature-germinated seeds of Xinluzao 25,a variety with low-temperature tolerance and high germination rates,were analyzed and compared.The following results were obtained.(1)A total of 81.06 Gb of clean data were obtained after transcriptome sequencing and assembly,and 76,931 non-redundant Unigene sequences were obtained after data consolidation and concatenation;of these,69,883 Unigene sequences were annotated.In addition,55,463 Unigene transcript sequences(72.2%)were annotated for Gene Ontology(GO)classification,and 26,629 genes were involved in 50 metabolic pathways identified by Kyoto Encyclopedia of Genes and Genomes(KEGG)analysis.(2)Three main pathways related to low-temperature tolerance of seed germination were identified:starch and sucrose metabolism,phenylpropanoid biosynthesis,and cysteine and methionine metabolism.Their main molecular functions involve the regulation of abscisic acid and activities of enzymes such as amylase,peroxidase,and oxidoreductase.During germination at low temperature,more genes were down-regulated than up-regulated genes at the protrusion stage(2 mm),and more genes were up-regulated than down-regulated at the germination stage(30 mm)after protrusion.(3)The enzyme activities at the two stages showed that amylase,peroxidase,catalase,and glutathione reductase had higher activities when the seeds germinated at 15℃.In this study,high expression of amylase,peroxidase,catalase,and glutathione reductase genes may be the main cause of increased tolerance to low temperature.
基金This work was supported by the National Natural Science Foundation of China (Grant No. 39893350) and the National Key Basic Researth and Development Program of China (Grant No. 2001CB108801).
文摘To understand the molecular mechanism of maize heterosis, differential gene expression patterns in the functional leaves of 35 maize hybrids relative to their parents involving 10 elite inbreds at milk filling stage were analyzed by using cDNA-AFLP. The correlation analyses of various differential expression patterns with the performance and heterosis of main maize agronomic traits were evaluated. The main results were as follows: For uniparental specific expression, significant positive correlations were detected with the performance of seed weight per ear and 100-seed weight at 0.01 and 0.05 probability levels respectively. For biparental specific expression, significant negative correla-tions were detected with the performance of ear diameter and seed weight per ear at 0.01 probability level. For uni-parental specific expression, significant positive correlations were detected with the heterosis of ear diameter and seed weight per ear at 0.01 and 0.05 probability levels respectively. For biparental specific expression, significant negative cor-relation was detected with the heterosis of ear diameter at 0.05 probability level. However, for F1-specific expression, for fragments detected only in one parent and F1, and for fragments detected only in two parents or only in F1, no sig-nificant correlation was detected with the performance or heterosis of all agronomic traits surveyed.
