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辽宁沿海日本海马线粒体控制区序列变异及其在海龙科鱼类系统分析中的应用 被引量:2
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作者 李玉龙 王彬 +5 位作者 王爱勇 于旭光 李轶平 韩振华 付杰 董婧 《水产学报》 CAS CSCD 北大核心 2017年第7期1073-1082,共10页
为研究日本海马野生群体的种质资源及遗传多样性状况,实验采用PCR扩增法获得日本海马线粒体DNA的控制区序列片段,同时利用GenBank数据库中已有的14种海龙科鱼类控制区同源序列对其进行序列比较及系统进化分析。结果显示,日本海马控制区... 为研究日本海马野生群体的种质资源及遗传多样性状况,实验采用PCR扩增法获得日本海马线粒体DNA的控制区序列片段,同时利用GenBank数据库中已有的14种海龙科鱼类控制区同源序列对其进行序列比较及系统进化分析。结果显示,日本海马控制区序列片段长度为557~558 bp,其A、T、G、C 4种碱基的平均含量分别为34.3%,29.7%,14.1%,21.9%。在控制区序列片段中,共检测到16个多态性核苷酸位点,定义了16种单倍型,其核苷酸多态度和单倍型多态度都较低(π=0.0032±0.0021,h=0.70±0.02)。利用GenBank数据库中已有的海马控制区同源序列,采用邻接法、最大似然法和贝叶斯法构建了分子系统树。结果显示,采用最大似然法和贝叶斯法构建的分子系统树拓扑结构与邻接法构建的分子系统树拓扑结构不完全相同但基本一致,系统进化分析结果与形态分类学的观点一致。研究表明,线粒体DNA控制区序列在海龙科不同阶元间变异较大,适合于海龙科鱼类种间、群体水平的研究以及作为系统进化分析的分子标记。 展开更多
关键词 日本海马 海龙科 线粒体dna 控制区序列 序列变异 系统分析
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The complete mitochondrial genome of Oreta fuscopurpurea(Lepidoptera: Drepanidae) and its phylogenetic implications
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作者 Xiaoyue Zhu Zihui Wang +1 位作者 Shun Yao Jiasheng Hao 《Zoological Systematics》 CSCD 2018年第2期139-155,共17页
In this study, the first complete mitochondrial genome(mitogenome) of lepidopteran family Drepanidae(superfamily Drepanoidea) was reported with the notes about its phylogenetic implications. The Oreta fuscopurpure... In this study, the first complete mitochondrial genome(mitogenome) of lepidopteran family Drepanidae(superfamily Drepanoidea) was reported with the notes about its phylogenetic implications. The Oreta fuscopurpurea mitogenome is 15,564 bp in length, including 13 protein-coding genes, two ribosomal RNAs(lrRNA and srRNA), 22 transfer RNAs and a non-coding control region(AT-rich region), with a 79.6% A+T content. The gene orientation and arrangement of the mitogenome are the same as other sequenced lepidopterans. All protein-coding genes usually start with the common ATN codon except for COI gene, which used CGA as the initial codon; eight PCGs use a typical stop codon of TAA, whereas the remaining PCGs use incomplete stop codon of T or TA. All tRNAs have the typical clover-leaf structure with the exception of t RNA^(Ser)(AGN). The lrRNA and sr RNA genes are 1,409 bp and 778 bp in size respectively, with the former harboring one(TA)_(13) microsatellite-like repeat and an 17 bp insertion. The 20 intergenic spacers totaling of 184 bp and 8 overlapping sequences totaling of 25 bp are scattered throughout the whole mitogenome. The 526 bp AT-rich region contains some structures characteristic of lepidopterans, such as the motif ATAGA preceded by an 19 bp poly-T stretch, a tRNA-like and a sterm-loop structures. Phylogenetic analysis of the Oreta fuscopurpurea with other 47 insect species covering 20 lepidopteran families were conducted based on the sequence data of the 13 mitogenomic protein coding genes with maximum likelihood(ML) and Bayesian inference(BI) methods, and the results showed distinctly that the superfamily Drepanoidea was sister to the clade of(Bombycoidea, Lasiocampoidea) +(Noctuoidea, Geometroidea). 展开更多
关键词 drepanoidea mt dna trna-like sequence phylogenetic analysis
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