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A Study on the Association Between Siglec-1 Gene Polymorphism and Susceptibility in Patients with Chronic Obstructive Pulmonary Disease in Luohe Area
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作者 Juan Cao Chun'e Wang +2 位作者 Bing Zhao Yi Zheng Sensen Li 《Journal of Clinical and Nursing Research》 2024年第6期1-9,共9页
Objective:To analyze the association between Siglec-1 gene polymorphism and susceptibility to chronic obstructive pulmonary disease(COPD)in the population of the Luohe area.Methods:A case-control study(150 COPD patien... Objective:To analyze the association between Siglec-1 gene polymorphism and susceptibility to chronic obstructive pulmonary disease(COPD)in the population of the Luohe area.Methods:A case-control study(150 COPD patients and 150 healthy controls)was conducted to analyze the Siglec-1 allele in two groups of individuals using single nucleotide polymorphism(SNP)high-throughput detection technology,and the frequencies of each allele were compared.Results:The frequency of rs611847 heterozygous A/G genotype in COPD patients was significantly lower in females than in healthy controls(OR=0.282,95%CI=0.085-0.938,P=0.039);among smokers,the frequency of rs3859664 and rs6084444 genotypes in COPD patients was significantly higher than that in the healthy control group(OR=2.028,95%CI=1.111-3.704,P=0.021;OR=1.836,95%CI=1.033-3.262,P=0.038).Conclusion:Among the COPD population in the Luohe area,there is a significant correlation between the genotypes of three SNPs loci,rs3859664,rs6084444,and rs611847 and susceptibility to COPD in different subgroups of the population.The rs3859664 A/G-A/A and rs6084444 A/G-G/G genotypes can increase the risk of COPD in smokers;the rs611847 heterozygous A/G genotype can reduce the risk of COPD in both female and smoking populations. 展开更多
关键词 Chronic obstructive pulmonary disease Siglec-l gene frequency
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The survey of the frequency of gene of ABO blood group in Dali
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《中国输血杂志》 CAS CSCD 2001年第S1期363-,共1页
关键词 ABO The survey of the frequency of gene of ABO blood group in Dali gene
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Changes in plasma calcitonin gene-related peptide and serum neuron specific enolase in rats with acute cerebral ischemia after low-frequency electrical stimulation with different waveforms and intensities 被引量:1
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作者 Qiang Gao Yonghong Yang Shasha Li Jing He Chengqi He 《Neural Regeneration Research》 SCIE CAS CSCD 2011年第28期2217-2221,共5页
Following acute cerebral ischemia in rats, plasma calcitonin gene-related peptide decreased and the level of serum neuron specific enolase and the volume of the infarction increased. Square-wave and triangular-wave el... Following acute cerebral ischemia in rats, plasma calcitonin gene-related peptide decreased and the level of serum neuron specific enolase and the volume of the infarction increased. Square-wave and triangular-wave electrical stimulation with low or high intensities could increase the plasma calcitonin gene-related peptide, decrease the serum neuron specific enolase and reduce the infarction volume in the brain in rats with cerebral ischemia. There was no significant difference between different wave forms and intensities. The experimental findings indicate that low-frequency electrical stimulation with varying waveforms and intensities can treat acute cerebral ischemia in rats. 展开更多
关键词 low-frequency electrical stimulation acute cerebral ischemia calcitonin gene-related peptide neuron specific enolase infarction volume
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Glutamate decarboxylase 1 gene polymorphisms are associated with respiratory symptoms in panic disorder
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作者 Zhi-Li Zou Jian Qiu +4 位作者 Xiao-Bo Zhou Yu-Lan Huang Jin-Yu Wang Bo Zhou Yuan Zhang 《World Journal of Psychiatry》 SCIE 2023年第7期435-443,共9页
BACKGROUND Genetic factors play an important role in the pathogenesis of panic disorder(PD).However,the effect of genetic variants on PD remains controversial.AIM To evaluate the associations between glutamate decarbo... BACKGROUND Genetic factors play an important role in the pathogenesis of panic disorder(PD).However,the effect of genetic variants on PD remains controversial.AIM To evaluate the associations between glutamate decarboxylase 1(GAD1)gene polymorphisms and PD risk and assess the effect of GAD1 gene polymorphisms on the severity of clinical symptoms in PD.METHODS We recruited 230 PD patients and 224 healthy controls in this study.All participants were assessed for anxiety and panic symptom severity using the Hamilton Anxiety Rating Scale(HAM-A)and Panic Disorder Severity Scale(PDSS).GAD1 gene polymorphisms(rs1978340 and rs3749034)were genotyped and assessed for allele frequencies.RESULTS There were no significant differences between cases and controls in the genotype distributions or allele frequencies of GAD1(rs1978340 and rs3749034).In addition,the effect of GAD1(rs1978340 and rs3749034)on PD severity was not significant.However,regarding respiratory symptoms,patients with the GAD1 rs1978340 A/A genotype had significantly higher scores than those with the A/G or G/G genotype.CONCLUSION Here,we showed that the A/A genotype of GAD1 rs1978340 was associated with increased severity of respiratory symptoms in patients with PD. 展开更多
关键词 Panic disorder gene polymorphisms Respiratory symptoms Allele frequencies PATHOgeneSIS Chinese population
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甘肃省小麦品种(系)矮秆基因检测及分布规律
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作者 杨芳萍 郭莹 +8 位作者 田媛媛 曹世勤 刘金栋 张雪婷 鲁清林 张文涛 王世红 虎梦霞 王雅美 《植物遗传资源学报》 CAS CSCD 北大核心 2024年第2期206-217,共12页
地方种是小麦育种的重要种质资源,为了解矮秆基因在地方种中的分布,本研究检测了甘肃省地方种矮秆基因等位变异类型及其在不同麦区的分布频率。结果表明:(1)地方种Rht-B1b和Rht-D1b的频率极低;41.4%的地方种携带Rht8,且春麦区高于冬麦区... 地方种是小麦育种的重要种质资源,为了解矮秆基因在地方种中的分布,本研究检测了甘肃省地方种矮秆基因等位变异类型及其在不同麦区的分布频率。结果表明:(1)地方种Rht-B1b和Rht-D1b的频率极低;41.4%的地方种携带Rht8,且春麦区高于冬麦区;46.7%的地方种含Rht24b,春麦区低于冬麦区。Ppd-D1a的频率仅17.8%,且春麦区低于冬麦区。另外,仅检测到Rht-D1b/Rht8、Rht-D1b/Rht24b和Rht8/Rht24b 3种组合,频率分别为0.2%、0.5%和12.8%。(2)地方种携带的矮秆基因及其组合分布频率低于育成种,且差异较大。不同来源育成品种携带的优势矮秆等位变异和频率不同,清水试验站的品种以Rht-D1b、Rht8和Rht24b为主,黄羊试验站的品种以Rht-B1b、Rht-D1b、Rht8和Rht24b为主,甘谷试验站的品种以Rht8和Rht24b为主。清水和黄羊试验站的品种秆矮、丰产性好,可在河西、沿黄灌区、陇南、陇东的小麦育种中应用;甘谷试验站的品种茎秆高,抗病性突出,可应用于定西、天水、陇南和陇东等旱地小麦的抗病改良。(3)基于分子标记检测结果,筛选出15份地方种和31份育成种,以上材料均携带2个及以上降秆基因(包括矮秆基因或Ppd-D1a),可为甘肃不同麦区小麦矮秆育种提供亲本材料。 展开更多
关键词 甘肃 地方种 矮秆基因 分子标记 分布频率
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2021年广西稻瘟病菌致病性分化及其无毒基因分析
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作者 颜群 岑贞陆 +5 位作者 农倩 李焜华 张月雄 韦丽丽 晏卫红 韦善富 《西南农业学报》 CSCD 北大核心 2024年第6期1281-1287,共7页
【目的】探究广西稻瘟病菌的致病力、优势种群和优势生理小种,分析其无毒基因,了解其生理小种及无毒基因组成与分布情况,为水稻抗性育种和品种推广提供参考。【方法】使用7个我国统一鉴别品种和26份已知抗病基因的近等基因系,采用室内... 【目的】探究广西稻瘟病菌的致病力、优势种群和优势生理小种,分析其无毒基因,了解其生理小种及无毒基因组成与分布情况,为水稻抗性育种和品种推广提供参考。【方法】使用7个我国统一鉴别品种和26份已知抗病基因的近等基因系,采用室内苗期人工喷雾接种方法对2021年从广西南部(桂南)、中部(桂中)、北部(桂北)和高寒山区4个不同生态稻作区分离得到的128株稻瘟病单孢菌株进行致病性测定。【结果】60.16%供试稻瘟病菌菌株表现出强致病力,128株稻瘟病菌株被划分为7个种群26个生理小种,ZB群为优势种群,出现频率为69.53%,优势生理小种为ZB_(13)和ZB_9,出现频率分别为25.00%、14.84%。供试菌株对26个抗病基因的毒力频率为28.12%~100.00%,其中,供试病菌对Pik、Pikm、Pi1、Pi9基因的毒力频率较低,分别为28.12%、28.91%、35.94%、37.50%。供试的广西稻瘟病菌含有与测试抗病基因相对应的无毒基因,其中15个无毒基因在桂南、桂中、桂北和高寒山区4个不同稻作区均有分布,无毒基因Avr-Pia(1)、Avr-Pia(2)、Avr-Pii、Avr-Pik^(s)、Avr-Pib、Avr-Pit、Avr-Pish(2)、Avr-Pi3(t)、Avr-Pi5(t)、Avr-Pi12(t)、Avr-Pi19(t)出现频率均低于20.00%。携带有5、6、7、8、10个无毒基因组合的菌株较多,其在供试菌株中占比分别为19.53%、11.72%、11.72%、15.63%、10.16%。【结论】2021年广西稻瘟病菌致病力强,优势种群为ZB群,优势生理小种为ZB_(13)和ZB_9,无毒基因Avr-Pia(1)、Avr-Pia(2)、Avr-Pii、Avr-Pik^(s)、Avr-Pib、Avr-Pit、Avr-Pish(2)、Avr-Pi3(t)、Avr-Pi5(t)、Avr-Pi12(t)和Avr-Pi19(t)出现频率较低,在水稻抗病育种与品种布局中,与之对应的抗病基因应慎用。 展开更多
关键词 稻瘟病菌 致病性 无毒基因 出现频率 广西
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贵阳地区血小板捐献者HPA-1~6/10/15/21和HLA-A/B基因多态性研究
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作者 王军 侯仕芳 +4 位作者 王娇 雷雨 余娜杰 赵霞 朱思刚 《贵州医科大学学报》 CAS 2024年第5期686-690,共5页
目的研究贵阳地区机采血小板捐献者人类血小板抗原HPA-1~6/10/15/21及人类白细胞抗原HLA-A、B基因分布及多态性。方法采用实时荧光定量PCR法(qPCR)对287名贵阳地区机采血小板捐献者进行HPA-1~6/10/15/21和HLA-A、B基因分型,列举aa\ab\b... 目的研究贵阳地区机采血小板捐献者人类血小板抗原HPA-1~6/10/15/21及人类白细胞抗原HLA-A、B基因分布及多态性。方法采用实时荧光定量PCR法(qPCR)对287名贵阳地区机采血小板捐献者进行HPA-1~6/10/15/21和HLA-A、B基因分型,列举aa\ab\bb基因及HLA-A、B等位基因的分布情况、计算aa\ab\bb基因及HLA-A、B等位基因型频率。结果287名血小板捐献者HPA-1~6/10/15/21系统中,HPA-4和HPA-10的基因型均为aa型,不具有多态性;HPA-1,2,5,6和21主要以aa型为主;仅在HPA-3和HPA-15中检出bb型;杂合度最高的是HPA-15,HPA3杂合度居次;HLA-A位点检出14个等位基因,频率最高的3个是A*02(0.36)、A*11(0.33)和A*24(0.162;HLA-B位点检出23个等位基因,频率最高的4个是B*46(0.19)、B*15(0.149、B*40(0.14)和B*13(0.13)。结论贵阳地区机采血小板捐献者HPA-1~6/10/15/21和HLA-A、B基因存在多态性,需建立该地HPA/HLA基因分型血小板供者库服务于临床。 展开更多
关键词 血小板 人类血小板抗原 人类白细胞抗原 HPA/HLA基因 多态性 基因频率
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抗Ku及其他高频抗原抗体的鉴定思路
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作者 张飞飞 李婧薇 +4 位作者 沈伟 何屹 袁红 田力 叶志君 《中国实验血液学杂志》 CAS CSCD 北大核心 2024年第3期875-882,共8页
目的:通过对一例女性高频抗原抗体(抗-Ku)病例进行血清学鉴定及血型基因测序分析,为高频抗原抗体的鉴定提供一定思路。方法:运用血型鉴定、患者红细胞抗原鉴定、抗体筛选、抗体鉴定等方式检测该患者的血型及抗体。以巯基试剂处理后的血... 目的:通过对一例女性高频抗原抗体(抗-Ku)病例进行血清学鉴定及血型基因测序分析,为高频抗原抗体的鉴定提供一定思路。方法:运用血型鉴定、患者红细胞抗原鉴定、抗体筛选、抗体鉴定等方式检测该患者的血型及抗体。以巯基试剂处理后的血清与筛选细胞反应、患者血清与酶或巯基试剂处理的筛选细胞反应的方式来判断该抗体的类型及特点,采用基因测序的方法确定患者血型的基因型。结果:该患者血型为O型RhD^(+),其血清与抗体筛选细胞及抗体鉴定细胞在间接抗人球及盐水介质中的反应呈强反应性,且强度一致,自身阴性,直接抗人球蛋白弱阳性;其他血型为CcEe、Jk(a+b-)、P1-、Le(a-b-)、Lu(a-b+)、K-、k-、Kp(a-b-)。血清经2-ME处理后,在间接抗人球介质中仍与3组筛选细胞反应;血清与经木瓜酶、菠萝酶修饰后的筛选细胞反应强度不变,与巯基试剂DTT、2-ME处理后的筛选细胞反应为阴性。基因测序显示该患者KEL基因型为KEL*02N.24,为罕见的K0表型。结论:血清学试验和分子生物学实验鉴定出该患者为罕见的Kell-null血型(又称K0),该患者体内产生了IgG及IgM性质的高频抗原抗体抗-Ku。血清学方法及分子生物学方法在此类稀有血型及高频抗原抗体的鉴定中具有重要意义。 展开更多
关键词 高频抗原抗体 K0 抗-Ku 血清学实验 基因测序
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血小板HPA-3,HPA-15基因分型微滴式数字PCR检测体系的构建
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作者 孔小娇 王红梅 +1 位作者 段生宝 刘铁梅 《中国输血杂志》 2024年第1期1-8,共8页
目的建立血小板HPA-3,HPA-15基因分型的微滴式数字PCR(ddPCR)高灵敏检测方法,并初步探索应用于孕妇外周血胎儿游离DNA HPA抗原相容性检测的可行性。方法针对HPA-3,HPA-15的SNP突变位点,设计特异性引物及MGB探针,优化ddPCR退火温度及引... 目的建立血小板HPA-3,HPA-15基因分型的微滴式数字PCR(ddPCR)高灵敏检测方法,并初步探索应用于孕妇外周血胎儿游离DNA HPA抗原相容性检测的可行性。方法针对HPA-3,HPA-15的SNP突变位点,设计特异性引物及MGB探针,优化ddPCR退火温度及引物浓度等扩增条件,建立最佳反应体系,明确检验程序。对该检测方法进行方法学性能评估包括特异性、灵敏度、重复性和稳定性。利用ddPCR技术对2022年6月至2023年6月67例临床血液标本进行检测,将等位基因分型结果与基因测序结果比较,并对52例母体外周血胎儿游离DNA HPA抗原进行检测。结果检测血小板HPA-3,HPA-15的ddPCR方法,引物及探针特异性良好,HPA-3,HPA-15的最佳退火温度分别为:61.6℃,60.2℃;体系最佳引物浓度分别为:900 nM,700 nM;探针终浓度均为250 nM。拷贝数定量检测范围为:2~20000 copies,检测下限为0.1 copies/μL且线性良好。在低拷贝数标本中,HPA-3及HPA-15实际检测值的批内及批间变异系数(CV)均<5%。对67份人血液标本DNA的HPA-3,HPA-15基因型检测,结果与基因测序结果完全一致。应用于胎母血小板HPA-3,HPA-15基因型检测结果符合预期。结论本研究构建的HPA-3,HPA-15 ddPCR检测体系准确性高,重复性及稳定性较好,灵敏度高,可应用于临床血小板HPA-3,HPA-15基因型供者库的建立、基因配型及胎母血小板相容性检测等。 展开更多
关键词 HPA 微滴式数字PCR 基因分型 基因频率
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东乡族人群Duffy、Kidd、Diego血型系统等位基因频率多态性研究
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作者 崔军 张伟萍 +3 位作者 惠霞 张晓萍 李国英 杨海燕 《中国输血杂志》 2024年第1期68-72,共5页
目的了解甘肃省东乡族人群Duffy、Kidd、Diego血型系统等位基因频率多态性分布。方法2017年1—12月随机抽取甘肃省东乡族无血缘关系献血者100名,采用荧光PCR法检测献血者红细胞Duffy、Kidd、Diego血型系统等位基因。结果东乡族人群Duffy... 目的了解甘肃省东乡族人群Duffy、Kidd、Diego血型系统等位基因频率多态性分布。方法2017年1—12月随机抽取甘肃省东乡族无血缘关系献血者100名,采用荧光PCR法检测献血者红细胞Duffy、Kidd、Diego血型系统等位基因。结果东乡族人群Duffy、Kidd、Diego血型系统等位基因频率为:Fy^(*)01为0.835、Fy^(*)02为0.165;Jk^(*)01为0.570、Jk^(*)02为0.430;DI^(*)01为0.020、DI^(*)02为0.980。未发现Fy(a-b-)、Jk(a-b-)、Di(a+b-)稀有表型。Duffy、Kidd、Diego血型系统等位基因对偶抗原Fya/Fy^(b)、Jk^(a)/Jk^(b)、Di^(a)/Di^(b)的不配合率分别为:23.76%、37.01%、3.84%。结论甘肃省东乡族人群Duffy、Kidd、Diego血型系统等位基因呈多态性分布,具有独特的民族分布特征。 展开更多
关键词 红细胞血型 等位基因频率 基因多态性 东乡族
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南昌地区血小板供者HLA-A、B和HPA基因多态性分析及分型库的建立
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作者 徐晶 舒轶 +4 位作者 杜忻 余真强 徐晓琴 周斌 魏小文 《现代诊断与治疗》 CAS 2024年第2期159-161,171,共4页
目的通过对血小板捐献者HLA-A、B和HPA 1-6,10,15,21基因位点的检测,分析基因位点分布特点,加强南昌地区血小板供者资料库的建设,保障临床血小板输注的有效性、及时性,提高临床输血疗效。方法对南昌地区800位血小板捐献者血样,采用荧光... 目的通过对血小板捐献者HLA-A、B和HPA 1-6,10,15,21基因位点的检测,分析基因位点分布特点,加强南昌地区血小板供者资料库的建设,保障临床血小板输注的有效性、及时性,提高临床输血疗效。方法对南昌地区800位血小板捐献者血样,采用荧光定量PCR的方法,对HLA-A、B位点、HPA 1-6,10,15,21位点进行基因分型,计算基因频率和基因型频率。结果HLA-A、B位点共检出HLA-A、HLA-B等位基因45个,其中HLA-A等位基因16个,频率较高的有A2、A11、A24;检出HLA-B等位基因29个,频率较高的有B13、15、B40、B46。HPA 1-6,10,15,21位点不配合率较高的是HPA3和HPA15,除此之外不配合率均低于10%。结论南昌地区人群与其它汉族地区HPA-HLA基因多态性类似。考虑其它汉族地区基因资料库计算结果和南昌ABO血型分布频率,资料库总人数需要达到7000人才能比较好的满足患者需求。 展开更多
关键词 血小板 HLA分型 HPA分型 基因频率 基因型频率
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漯河地区人群配对受体Siglec-5/14基因多态性与COPD疾病易感性的关联研究
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作者 曹娟 韩会娜 +1 位作者 杨艳兵 李森森 《延安大学学报(医学科学版)》 2024年第2期20-24,共5页
目的 分析漯河地区慢性阻塞性肺疾病(chronic obstructive pulmonary disease,COPD)人群Siglec-5/14基因多态性与疾病易感性的关联性。方法 采用病例-对照(COPD患者300人,健康对照者300人)研究,应用目标区域重测序结合多重PCR和高通量... 目的 分析漯河地区慢性阻塞性肺疾病(chronic obstructive pulmonary disease,COPD)人群Siglec-5/14基因多态性与疾病易感性的关联性。方法 采用病例-对照(COPD患者300人,健康对照者300人)研究,应用目标区域重测序结合多重PCR和高通量测序技术对两组人群Siglec-5/14等位基因进行分析,并比较各等位基因频率。结果 在男性人群中,rs883552 G/G基因型、rs7359936 C/C基因型在COPD患者中的频率高于健康对照组(OR=1.695,95%CI:1.016~2.827,P<0.05;OR=1.739,95%CI:1.047~2.890,P<0.05),吸烟人群COPD患病人群rs7359936 C/C基因型比例高于健康对照组(OR=1.821,95%CI:1.034~3.207,P<0.05)。结论 在漯河地区男性人群中,rs883552 G/G基因型、rs7359936 C/C基因型与COPD风险的增加具有相关性;在吸烟人群中,rs7359936 C/C基因型同样增加COPD患病的风险。 展开更多
关键词 慢性阻塞性肺疾病 Siglec-5/14 基因频率
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金华地区血小板献血者血小板基因的分型特点和基因库建设
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作者 钱江 杜晓明 吴昕 《浙江医学》 CAS 2024年第8期820-825,共6页
目的研究金华地区血小板献血者人类白细胞抗原(HLA)-A、B位点和人类血小板抗原(HPA)-1~6、10、15、21位点的多态性分布特点并统计基因频率,初步建立起金华地区血小板基因库。方法对2020年1月至2021年2月金华市中心血站109名单采血小板... 目的研究金华地区血小板献血者人类白细胞抗原(HLA)-A、B位点和人类血小板抗原(HPA)-1~6、10、15、21位点的多态性分布特点并统计基因频率,初步建立起金华地区血小板基因库。方法对2020年1月至2021年2月金华市中心血站109名单采血小板献血者标本的HLA-A、B和HPA-1~6、10、15、21位点进行基因分型,计算基因频率,并与不同国家和地区进行比较,分析基因分布的差异性。结果109名金华地区血小板献血者共检出HLA-A位点等位基因14个,基因频率较高的等位基因分别是A*02、A*11、A*24、A*33;检出HLA-B位点等位基因24个,基因频率从高到低分别是B*40、B*15、B*46、B*58、B*55、B*39、B*13。金华地区的A*02、A*11、B*40、B*15、B*46等位基因的分布频率与西安、云南、河南、辽宁、淄博、广东等地相比,差异均有统计学意义(均P<0.05)。HLA-A、B位点基因分型结果均符合Hardy-Weinberg平衡(均P>0.05)。HPA-4a、10a呈单特异性,杂合度最高的基因型是HPA-3和HPA-15,经Hardy-Weinberg遗传平衡检验,发现金华地区HPA-1~3、6、15、21的基因频率符合遗传平衡法则,基因具备恒定性。金华地区与英国、美国相比,HPA-1、HPA-2、HPA-5、HPA-15基因频率差异均有统计学意义(均P<0.05)。结论金华地区血小板基因库的建立有助于为血小板输注无效的患者提供HLA和HPA相对匹配的血小板制品,提高血小板输注效率。 展开更多
关键词 人类白细胞抗原 人类血小板抗原 基因频率 血小板基因库
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瘤胫果实蝇线粒体全基因组分析与系统发育
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作者 黄振 郭琼霞 《福建农业学报》 CAS CSCD 北大核心 2024年第4期482-491,共10页
【目的】明确瘤胫果实蝇[Bactrocera Bactrocera tuberculata(Bezzi)]线粒体全基因组序列特征,探究其系统发育地位,为瘤胫果实蝇分子标记、物种鉴定和进化遗传学研究提供参考依据。【方法】采用高通量测序技术对瘤胫果实蝇的线粒体全基... 【目的】明确瘤胫果实蝇[Bactrocera Bactrocera tuberculata(Bezzi)]线粒体全基因组序列特征,探究其系统发育地位,为瘤胫果实蝇分子标记、物种鉴定和进化遗传学研究提供参考依据。【方法】采用高通量测序技术对瘤胫果实蝇的线粒体全基因组进行测序、组装、拼接和注释,获得基因组全序列,并对基因组基本结构进行分析;选择NCBI公布的果实蝇属近缘种20种实蝇的线粒体全基因组序列,基于最大似然法(Maximum likelihood,ML)进行系统发育分析。【结果】瘤胫果实蝇线粒体基因组序列总长度为15854 bp;具37个基因,其中包含13个蛋白编码基因、22个tRNA基因、2个rRNA基因和1个非编码控制基因。瘤胫果实蝇线粒体基因组全序列A+T含量为73.2%;13个蛋白质编码基因共有密码子3755个,在蛋白质所有22种氨基酸密码子中,UUA(leucine)的使用频率N及相对密码子RSCU使用频率均最高,N(RSCU)为387(3.79);tRNA基因二级结构中,除苯丙氨酸(F)以及苏氨酸(T)缺少假尿嘧啶(T)环和丝氨酸(S1)缺少二氢尿嘧啶DHU环,其余19个tRNA基因均能折叠形成典型的三叶草二级结构,22个tRNA基因中,共存在178处碱基对错配,错配碱基对均为G-U。通过对其近缘种线粒体全基因组的系统发育分析,瘤胫果实蝇与桔小实蝇(Bactrocera dorsalis)和杨桃实蝇(Bactrocera carambolae)聚在一起,表明3种实蝇的亲缘关系较近,与果实蝇亚属的其他种类聚在同个分支上,结果与形态鉴定一致。【结论】首次报道了瘤胫果实蝇线粒体全基因组,GenBank登录号MW 892726,测定和分析的瘤胫果实蝇线粒体基本结构特征,核苷酸组成、系统进化分析,支持瘤胫果实蝇属于果实蝇亚属,为物种诊断、进化生物学和防治研究提供依据。 展开更多
关键词 瘤胫果实蝇 线粒体全基因组 序列分析 相对密码子使用频率 tRNA基因二级结构 系统发育
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Transferring a Gene Expression Cassette Lacking the Vector Backbone Sequences of the 1Ax1 High Molecular Weight Glutenin Subunit into Two Chinese Hexaploid Wheat Genotypes 被引量:6
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作者 SHI Nong-nong HE Guang-yuan LI Ke-xiu WANG Hui-zhong CHEN Guan-ping XU Ying 《Agricultural Sciences in China》 CAS CSCD 2007年第4期381-390,共10页
1Ax1 high molecular weight glutenin subunit (HMW-GS) gene expression cassette (GEC) lacking vector backbone sequences together with selectable marker Bar GEC were co-transformed into Chinese hexaploid cultivars Ee... 1Ax1 high molecular weight glutenin subunit (HMW-GS) gene expression cassette (GEC) lacking vector backbone sequences together with selectable marker Bar GEC were co-transformed into Chinese hexaploid cultivars Een 1 and Emai 12 to test the feasibility and the efficiency of explant regeneration, transformation frequency and transgene expression comparing with whole vector transformation by the approaches of plasmid extraction and excision, immature embryo isolation, particle co-bombardment, tissue culture, DNA extraction, PCR amplification, southern hybridization, leaf-painting test and SDS-PAGE etc. No significant difference was shown in tissue culture response of the proportion of embryogenic calli, somatic embryogenesis and regeneration frequency between GEC and whole plasmid bombarded embryos, but both regenerated less well than non-bombarded control. Total 56 plantlets that survived PPT selection had insertion of at least the Bar gene, 18 were from the GEC treatment and 38 from the whole plasmid treatment, the escape ratio averaged 0.23. Six independent transplants f230 - f235 with GEC transformation from genotype Emai 12 presented clear PCR amplification bands of Bar and 1Ax1 gene. The transformation and co-transformation frequency were 3.51 and 100% respectively. PCR amplification using a primer-pair specific for ampicillin resistant gene indicated the existence of Amp^R gene in whole vectors but the removal in GECs and transplants. Southern blot of total DNA and PCR products from transgenic plants of 1Ax1 GEC confirmed the integration of the transgene 1Ax1 and the absence of the EcoR Ⅰ recognition site at both ends of the 1Ax1 GEC when integrated. SDS-PAGE showed the expression of 1Ax1 GEC and un-expression of whole plasmid. The length of integrated fragment, the proportion of the gene of interest (GOI) and the selectable marker (MG), bombardment pressure and genotypes are vital for the expression of a transformed GEC. 展开更多
关键词 Triticum aestivum L. HMW-GS 1Ax1 gene expression cassette transformation frequency expression
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Polymorphism of HIV-1 Resistance Genes in Dai and Jingpo Minorities of Yunnan Province 被引量:1
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作者 YaQIU LinPENG +1 位作者 HaoHUANG Fu-shengWANG 《Journal of Reproduction and Contraception》 CAS 2004年第1期39-46,共8页
Objective To investigate the mutant frequency and polymorphism of HIV-1 resistanceCCR5-Δ32, CCR2-64I, SDF1-3’A alleles in Jingpo and Dai nationalities of YunnanMethods The study population included 101 Dai and 113 J... Objective To investigate the mutant frequency and polymorphism of HIV-1 resistanceCCR5-Δ32, CCR2-64I, SDF1-3’A alleles in Jingpo and Dai nationalities of YunnanMethods The study population included 101 Dai and 113 Jingpo ethnical subjects.The genotypes were respectively detected by polymerase chain reaction (PCR) or byPCR/RFLP (restriction fragment length polymorphism) assay. Mutant frequencies werecalculated and allelic polymorphism of the three genes in population was analyzed byU test.Results We didn’t find CCR5-Δ32 mutant in either Dai or Jingpo nationality. In Daiminority, the allele frequency of CCR2-64I was 21.00% and that of SDF1-3’Awas 20.30%. In Jingpo minority, the allele frequency of CCR2-64I was 16.37% and thatof SDF1-3’A was 17.70%.Conclusion Dai and Jingpo nationality of Yunnan might have a high genetic suscep-tibility to HIV-1 (including R5 and X4 HIV strains) since we didn’t find CCR5-Δ32 andthe frequency of SDF1-3’A was much lower than that of Han nationality as wasreported in other research papers. 展开更多
关键词 HIV-1 co-receptor gene mutation POLYMORPHISM allele frequency
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Association of Graves’ disease and Graves’ ophthalmopathy with the polymorphisms in promoter and exon 1 of cytotoxic T lymphocyte associated antigen-4 gene 被引量:11
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作者 ZHANG Qin YANG Yun-mei LV Xue-ying 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 SCIE CAS CSCD 2006年第11期887-891,共5页
Objective: To investigate the association of Graves’ disease and Graves’ ophthalmopathy with the C/T transition polymorphism at position –318 of promoter and the A/G transition polymorphism at position 49 of exon 1... Objective: To investigate the association of Graves’ disease and Graves’ ophthalmopathy with the C/T transition polymorphism at position –318 of promoter and the A/G transition polymorphism at position 49 of exon 1 within cytotoxic T lymphocyte associated antigen-4 (CTLA-4) gene. Methods: Thirty-three patients with ophthalmopathy of Graves’ disease, fifty-six Graves’ patients without ophthalmopathy and sixty normal subjects as control were involved in the present case-control study. The polymorphisms were evaluated by polymerase chain reaction fragment length polymorphism (PCR-RFLP). Com-parisons were made of gene frequencies and allele frequencies between the groups. Results: The gene frequencies of CT and allele frequencies of T were much higher in Graves’ patients with ophthalmopathy than that in the group without ophthalmopathy (P=0.020, P=0.019). The gene frequencies of GG and allele frequencies of G in patients with Graves’ disease were significantly increased as compared with control group (P=0.008, P=0.007). The data suggest that smokers with Graves’ disease seemed to be more predisposed to ophthalmopathy than non-smokers (P=0.018). Conclusion: Our results suggest that an allele of T at position –318 of promoter is associated with genetic susceptibility to Graves’ ophthalmopathy while an allele of G at position 49 of exon 1 is associated with genetic susceptibility to Graves’ disease instead. Smoking is believed to be a major risk factor for ophthalmo-pathy. 展开更多
关键词 眼病 甲状腺机能亢进 基因频率 易患基因
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APC and K-ras gene mutation in aberrant crypt foci of human colon 被引量:20
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作者 Ping Yuan~1 Meng Hong Sun~2 Jin Sheng Zhang~1 Xiong Zeng Zhu~2 Da Ren Shi~2 ~1Department of Pathology,Medical College of Fudan University,~2Department of Pathology,Cancer Hospital/Cancer Institute,Fudan University,Shanghai 200032,ChinaDr.Ping Yuan Studying Province.studying in Medical College of Fudan University,worked in Department of Pathology,Wannan Medical College,having eighteen papers published. 《World Journal of Gastroenterology》 SCIE CAS CSCD 2001年第3期352-356,共5页
AIM To study the genetic alteration in ACF andto define the possibility that ACF may be a veryearly morphological lesion with molecularchanges, and to explore the relationshipbetween ACF and colorectal adenoma evencar... AIM To study the genetic alteration in ACF andto define the possibility that ACF may be a veryearly morphological lesion with molecularchanges, and to explore the relationshipbetween ACF and colorectal adenoma evencarcinoma.METHODS DNA from 35 CRC, 15 adenomas, 34ACF and 10 normal mucus was isolated by meansof microdissection. Direct gene sequencing of K-ras gene including codon 12, 13 and 61 as well asthe mutation cluster region (MCR) of APC genewas performed.RESULTS K-ras gene mutation frequency inACF, adenoma and carcinoma was 17.6% (6/34), 13.3% (2/ 15), and 14.3% (5/ 35)respectively, showing no difference ( P > 0.05)in K-fas gene mutation among three pathologicprocedures. The K-ras gene mutation inadenoma, carcinoma and 4 ACF restricted incodon 12 (GGT→GAT), but the other 2 mutationsfrom ACF located in codon 13 (GGC→GAC). K-res gene mutation was found more frequently inolder patients and patients with polypoidcancer. No mutation in codon 61 was found in thethree tissue types. Mutation rate of APO gene inadenoma and carcinoma was 22.9% (8/35) and26.7% (4/ 15), which was higher than ACF(2.9%) (P < 0.05). APC gene mutation incarcinoma was not correlated with age ofpatients, location, size and differentiation oftumor.CONCLUSION ACF might be a very earlymorphological lesion in the tumorogenesis ofcolorectal tumor. The morphological feature andgene mutation status was different in ACF andadenoma. ACF is possibly putative'microadenoma' that might be the precursor ofadenoma. In addition, the development of asubgroup of colorectal carcinomas mightundergo a way of 'normal epithelium→ ACF→carcinomas'. 展开更多
关键词 colorectal carcinoma ABERRANT CRYPT FOCI (ACF) ADENOMA K-RAS APC DNA sequencing
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Rapid gene expression change in a novel synthesized allopolyploid population of cultivated peanut×Arachis doigoi cross by cDNA-SCoT and HFO-TAG technique 被引量:3
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作者 HE Liang-qiong TANG Rong-hua +7 位作者 JIANG Jing XIONG Fa-qian HUANG Zhi-peng WU Hai-ning GAO Zhong-kui ZHONG Rui-chun HE Xin-hua HAN Zhu-qiang 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2017年第5期1093-1102,共10页
AIIopolyploidy has played an important role in plant evolution and heterosis. Recent studies indicate that the process of wide hybridization and (or) polyploidization may induce rapid and extensive genetic and epige... AIIopolyploidy has played an important role in plant evolution and heterosis. Recent studies indicate that the process of wide hybridization and (or) polyploidization may induce rapid and extensive genetic and epigenetic changes in some plant species. To better understand the allopolyploidy evolutionism and the genetic mechanism of Arachis interspecific hybridization, this study was conducted to monitor the gene expression variation by cDNA start codon targeted polymorphism (cDNA-SCoT) and cDNA high-frequency oligonucleotide-targeting active gene (cDNA-HFO-TAG) techniques, from the hybrids (F1) and newly synthesized allopolyploid generations (S0-$3) between tetraploid cultivated peanut Zhongkaihua 4 with diploid wild one Arachis doigoi. Rapid and considerable gene expression variations began as early as in the FI hybrid or immediately after chromosome doubling. Three types of gene expression changes were observed, including complete silence (gene from progenitors was not expressed in all progenies), incomplete silence (gene expressed only in some progenies) and new genes activation. Those silent genes mainly involved in RNA transcription, metabolism, disease resistance, signal transduction and unknown functions. The activated genes with known function were almost retroelements by cDNA-SCoT technique and all metabolisms by cDNA-HFO-TAG. These findings indicated that interspecific hybridization and ploidy change affected gene expression via genetic and epigenetic alterations immediately upon allopolyploid formation, and some obtained transcripts derived fragments (TDFs) probably could be used in the research of molecular mechanism of Arachis allopolyploidization which contribute to thwe genetic diploidization of newly formed allopolyploids. Our research is valuable for understanding of peanut evolution and improving the utilization of putative and beneficial genes from the wild peanut. 展开更多
关键词 PEANUT ALLOPOLYPLOIDY gene expression start codon-targeted polymorphism high-frequency oligonucleotide-targeting active gene
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Genetic screening of 5 blood group systems of Li ethnic group in Hainan province and establishment of rare blood group bank
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作者 FU Xiao-ling CAI Xing-quan XIA Lan 《Journal of Hainan Medical University》 2022年第20期6-12,共7页
Objective:To screen the blood group system genes of Duffy,Lutheran,Kidd,Diego,Dombrock blood group systems of Li ethnic group in Hainan Province and provide laboratory data for the rare blood group database in this ar... Objective:To screen the blood group system genes of Duffy,Lutheran,Kidd,Diego,Dombrock blood group systems of Li ethnic group in Hainan Province and provide laboratory data for the rare blood group database in this area.Methods:The alleles of Duffy,Lutheran,Kidd,Diego,Dombrock blood group systems of 300 voluntary participants of Li ethnic group in Hainan were detected by sequence-specific primer polymerase chain reaction,and the polymorphism was analyzed.Results:The allele frequencies of Duffy,Lutheran,Kidd,Diego,Dombrock blood group systems of Li ethnic groups in Hainan Province are 0.9583 for Fy^(a),0.0417 for Fy^(b),0.8350 for Au^(a),0.1650 for Au^(b),0.4500 for Jk^(a),0.5500 for Jk^(b),0.0667 for Di^(a),0.9333 for Di^(b),0.1017 for Doa and 0.8983 for Dob,respectively.The antigen incompatibility rates of Fy^(a)/Fy^(b),Au^(a)/Au^(b),Jk^(a)/Jk^(b),Di^(a)/Di^(b),Doa/Dob of Duffy,Lutheran,Kidd,Diego,Dombrock blood group systems were 7.67%,23.76%,37.25%,11.67%and 16.60%,respectively.Conclusion:The gene frequencies of Duffy,Lutheran,Kidd,Diego,Dombrock blood group systems of Li ethnic group in Hainan Province are polymorphic,and the antigen incompatibility rates of alleles are higher,which is quite different from that of other nationalities in China and with unique ethnic distribution characteristics.It is of great significance to establish the rare blood group database in this region. 展开更多
关键词 Blood group gene gene frequency Rare blood group bank Li ethnic
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