Identification of an Aux/IAA regulator for flesh firmness using combined GWAS and bulked segregant RNA-Seq analysis in watermelon

Watermelon is a highly cultivated fruit crop renowned for its quality properties of fruit flesh.Among various quality factors,fruit flesh firmness is a crucial quality parameter influencing the fruit texture,shelf life and its commercial value.The auxin/indole-3-acetic acid(Aux/IAA)plays a significant role in fruit development and ripening of non-climacteric fruits.However,the regulatory mechanism of Aux/IAA in controlling fruit flesh firmness and ripening in watermelon remains unknown.In this study,we employed an integrative approach combining genome-wide association study(GWAS)and bulked segregant RNA-Seq analysis(BSR-Seq)to identify an overlapping candidate region between 12776310 and 12968331 bp on chromosome 6,underlying an auxin-responsive gene(Aux/IAA)associated with flesh firmness in watermelon.Transcriptome analysis,followed by real-time quantitative reverse transcription PCR(qRT-PCR),confirmed that the expression of Aux/IAA was consistently higher in fruits with high flesh firmness.The sequence alignment revealed a single base mutation in the coding region of Aux/IAA.Furthermore,the concomitant Kompetitive/Competitive allele-specific PCR(KASP)genotyping data sets for F2 population and germplasm accessions identified Aux/IAA as a strong candidate gene associated with flesh firmness.Aux/IAA was enriched in the plant hormone signal transduction pathway,involving cell enlargement and leading to low flesh firmness.We determined the higher accumulation of abscisic acid(ABA)in fruits with low flesh firmness than hard flesh.Moreover,overexpression of Aux/IAA induced higher flesh firmness with an increased number of fruit flesh cells while reducing ABA content and flesh cell sizes.Additionally,the allelic variation in Aux/IAA for soft flesh firmness was found to exist in Citrullus mucosospermus and gradually fixed into Citrullus lanatus during domestication,indicating that soft flesh firmness was a domesticated trait.These findings significantly enhanced our understanding of watermelon fruit flesh firmness and consequently the watermelon fruit quality.

Enhancer of Shoot Regeneration 2(ESR2)regulates pollen maturation and vitality in watermelon(Citrullus lanatus)

Watermelon(Citrullus lanatus)holds global significance as a fruit with high economic and nutritional value.Exploring the regulatory network of watermelon male reproductive development is crucial for developing male sterile materials and facilitating cross-breeding.Despite its importance,there is a lack of research on the regulation mechanism of male reproductive development in watermelon.In this study,we identified that ClESR2,a VIIIb subclass member in the APETALA2/Ethylene Responsive Factor(AP2/ERF)superfamily,was a key factor in pollen development.RNA insitu hybridization confirmed significantClESR2 expression in the tapetum and pollen during the later stage of anther development.The pollens of transgenic plants showed major defects in morphology and vitality at the late development stage.The RNA-seq and protein interaction assay confirmed that ClESR2 regulates pollen morphology and fertility by interacting with key genes involved in pollen development at both transcriptional and protein levels.These suggest that Enhancer of Shoot Regeneration 2(ESR2)plays an important role in pollen maturation and vitality.This study helps understand the male reproductive development of watermelon,providing a theoretical foundation for developing male sterile materials.

Quantitative trait loci identification reveals zinc finger protein CONSTANS-LIKE 4 as the key candidate gene of stigma color in watermelon(Citrullus lanatus)

Stigma color is a critical agronomic trait in watermelon that plays an important role in pollination.However,there are few reports on the regulation of stigma color in watermelon.In this study,a genetic analysis of the F2 population derived from ZXG1553(P1,with orange stigma)and W1-17(P2,with yellow stigma)indicated that stigma color is a quantitative trait and the orange stigma is recessive compared with the yellow stigma.Bulk segregant analysis sequencing(BSA-seq)revealed a 3.75 Mb segment on chromosome 6 that is related to stigma color.Also,a major stable effective QTL Clqsc6.1(QTL stigma color)was detected in two years between cleaved amplified polymorphic sequencing(CAPS)markers Chr06_8338913 and Chr06_9344593 spanning a~1.01 Mb interval that harbors 51 annotated genes.Cla97C06G117020(annotated as zinc finger protein CONSTANS-LIKE 4)was identified as the best candidate gene for the stigma color trait through RNA-seq,quantitative real-time PCR(qRT-PCR),and gene structure alignment analysis among the natural watermelon panel.The expression level of Cla97C06G117020 in the orange stigma accession was lower than in the yellow stigma accessions with a significant difference.A nonsynonymous SNP site of the Cla97C06G117020 coding region that causes amino acid variation was related to the stigma color variation among nine watermelon accessions according to their re-sequencing data.Stigma color formation is often related to carotenoids,and we also found that the expression trend of ClCHYB(annotated asβ-carotene hydroxylase)in the carotenoid metabolic pathway was consistent with Cla97C06G117020,and it was expressed in low amounts in the orange stigma accession.These data indicated that Cla97C06G117020 and ClCHYB may interact to form the stigma color.This study provides a theoretical basis for gene fine mapping and mechanisms for the regulation of stigma color in watermelon.

Effects of Functional Organic Materials on Morphological Indexes,Quality and Yield of Watermelon

[Objectives]This study was conducted to explore suitable organic compound application models for watermelon growth.[Methods]With watermelon hybrid material"M22×P18"as the test material,the effects of four functional organic materials,namely garlic straw treatment(T_(1)),onion straw treatment(T_(2)),garlic straw+sheep manure treatment(T_(3))and onion straw+chicken manure treatment(T_(4)),on the morphological indexes,yield and quality of watermelon were investigated.[Results]Different functional organic materials had different effects on morphological indexes,yield and quality of watermelon.The morphological indexes,nutritional quality indexes and yield of watermelon treated with garlic straw and sheep manure compound(T_(3))and onion straw and chicken manure compound(T_(4))were significantly higher than those treated simply with garlic straw(T_(1))and onion straw(T_(2)),and T_(3)performed relatively better.Compared with treatment T_(2),T_(3)showed a stem diameter,vine length and leaf number increasing by 43.05%,46.69%and 40.77%respectively,central sugar and side sugar contents increasing by 11.72%and 21.90%respectively,and a yield increasing by 42.91%,with significant differences from T_(2).[Conclusions]This study provides technical support for high-quality and high-yielding cultivation of watermelon.

Effects of Functional Organic Materials on Fresh Weight,Quality,Single-melon Weight and SPAD Value of Watermelon

[Objectives]This study was conducted to explore a functional organic material formula suitable for watermelon cultivation with high quality,high yield and high efficiency.[Methods]Four treatments were set in the experiment,namely four functional organic materials,garlic straw treatment(T_(1)),onion straw treatment(T_(2)),garlic straw+sheep manure treatment(T_(3))and onion straw+chicken manure treatment(T_(4)),to investigate the effects of different functional organic materials on fresh weight,quality,single-melon weight and SPAD value of watermelon.[Results]The effects of different functional organic materials on fresh weight,quality,single-melon weight and SPAD value of watermelon were quite different.The fresh weight,quality,single-melon weight and SPAD value of watermelon were higher in treatment T_(3)applying garlic straw and sheep manure and treatment T_(4)applying onion straw and chicken manure than in treatment T_(1)applying garlic straw and treatment T_(2)applying onion straw.Specifically,the fresh weight of whole plant was the highest in treatment T_(3),followed by treatment T_(4),and the values of the two treatments increased by 12.83%and 5.94%respectively compared with treatment T_(1);the weight of single melon was the highest in treatment T_(3),followed by treatment T_(4),and the values of the two treatments increased by 42.45%and 31.77%respectively compared with treatment T_(2);and the SPAD values of treatments T_(3)and T_(4)were significantly higher than those of treatments T_(1)and T_(2),and the value of treatment T_(3)was the largest.[Conclusions]This study provides theoretical support for the popularization and application of fertilization techniques combining organic fertilizers and reduced chemical fertilizers for watermelon.

Research on Stoichiometry of Early-spring Herbs Functional Group in the Subtropical Artificial Wetland

[Objective]The aim was to carry out stoichiometry on the early-spring herbs functional group in subtropical artificial wetland.[Method]UV-Vis spectrophotometer was used for the determination of nitrate-nitrogen,ammonium nitrogen and phosphorus concentrations.Potassium persulfate absorptiometry was used for the measurement of total N content,while the flame photometer was used to detect the potassium and sodium concentration in plants.All the nutrient determination of plant samples were repeated for four times.[Result]The four nutrient concentrations in almost all samples were in the normal range of natural plant nutrition concentrations;in early-spring herbs functional groups,different species showed diversity on the nutrient concentrations;plant height had no significant effect on the nutrient concentrations in plants;the nutrient concentrations of non-grass group plants were higher than that of grass group plants;the nutrient concentrations of the annual herb were higher than that of perennial herbs.[Conclusion]The study had provided basis for the understanding of the effects of changes in nutritional conditions on species diversity,community structure and succession of the system.

HD-Zip Transcription Factor is Responsible for No-Lobed Leaf in Watermelon(Citrullus lanatus L.)

Leaf is a vital organ of plants that plays an essential role in photosynthesis and respiration.As an important agronomic trait in leaf development,leaf shape is classified into lobed,entire(no-lobed),and serrated in most crops.In this study,two-lobed leaf watermelon inbred lines WT2 and WCZ,and a no-lobed leaf watermelon inbred line WT20 were used to create two F_(2)populations.Segregation analysis suggested that lobed leaves were dominant over the no-lobed leaves,and it was controlled by a signal gene.A locus on watermelon chromosome 4 controlling watermelon lobed/no-lobed leaves was identified through BSA-seq strategy combined with linkage analysis.The candidate gene was fine-mapped to a 61.5 kb region between 21,224,481 and 21,285,957 bp on watermelon chromosome 4 using two F_(2)populations.Four functional genes were annotated in the candidate region,while sequences blast showed that there was a single-base deletion(A/-)only in the exon of Cla018360,which resulted in premature termination of translation in the no-lobed leaf lines.Function prediction showed that Cla018360 encodes an HD-Zip protein that has been reported to regulate the development of leaf shape.The single-base deletion also occurred in the HD-Zip domain.We inferred that the Cla018360 gene is the candidate gene for regulating the development of lobed/no-lobed leaves in watermelon.Gene expression analysis showed that Cla018360 was highly expressed in young leaves.Phylogenetic analysis showed that Cla018360 had a close genetic relationship with AtHB51,which had been reported to regulate the formation of leaf shape in Arabidopsis.Furthermore,transcriptome analysis showed that a total of 333 differentially expressed genes were identified between WT2 and WT20,of which 115 and 218 genes were upregulated and downregulated in no-lobed leaved watermelon WT20.This study not only provides a good entry point for studying leaf development but also provides foundational insights into breeding for special plant architecture in watermelon.

Genome-wide analysis of nuclear factor Y genes and functional investigation of watermelon ClNF-YB9 during seed development

The nuclear factor Y(NF-Y) gene family is a class of transcription factors that are widely distributed in eukaryotes and are involved in various biological processes. However, the NF-Y gene family members in watermelon, a valued and nutritious fruit, remain largely unknown and their functions have not been characterized. In the present study, 22 ClNF-Y genes in watermelon, 29 CsNF-Y genes in cucumber, and 24CmNF-Y genes in melon were identified based on the whole-genome investigation and their protein properties, gene location, gene structure, motif composition, conserved domain, and evolutionary relationship were investigated. ClNF-YB9 from watermelon and its homologs in cucumber and melon were expressed specifically in seeds. Its expression remained low in the early stages of watermelon seed development,increased at 20 days after pollination(DAP), and peaked at 45–50 DAP. Moreover, the knockout mutant Clnf-yb9 exhibited abnormal leafy cotyledon phenotype, implying its critical role during seed formation.Finally, protein interaction assays showed that ClNF-YB9 interacts with all ClNF-YCs and the ClNF-YB9-YC4 heterodimer was able to recruit a ClNF-YA7 subunit to assemble a complete NF-Y complex, which may function in seed development. This study revealed the structure and evolutionary relationships of the NF-Y gene family in Cucurbitaceae and the novel function of ClNF-YB9 in regulating seed development in watermelon.

Effects of Flooding Stress on Growth and Root Physiology and Biochemistry of Grafted Red-seed Watermelon Seedlings

[Objectives]This study was conducted to explore how to improve the waterlogging tolerance of red-seed watermelon through grafting,to provide a theoretical basis for its cultivation in rainy season.[Methods]The effects of flooding stress on the growth and root physiological and biochemical characteristics of grafted and own-rooted red-seed watermelon seedlings were studied using Luffa as rootstocks and"Zhongxin 1"red-seed watermelon as scions.[Results]After flooding stress,the biomass and root activity of grafted seedlings of red-seed watermelon were significantly higher than those of own-rooted seedlings.With the prolongation of flooding stress time,the soluble sugar and proline content showed a trend of first increasing and then decreasing,and the grafted seedlings had a larger increase and a smaller decrease,and were always significantly higher than own-rooted seedlings in the same period.The content of malondialdehyde in the root system of grafted seedlings increased first and then decreased,while it continued to increase in own-rooted seedlings,and the increase in own-rooted seedlings was significantly greater than that in grafted seedlings during the same period.[Conclusions]Grafting on Luffa rootstocks could improve waterlogging tolerance of red-seed watermelon.

Summary of Short-vine Watermelon Breeding Practice

This paper expounded the current situation and genetic mechanisms of short-vine watermelon breeding from the aspects of material sources,breeding process and genetic characteristics of F_1,hoping to provide a theoretical basis for short-vine watermelon breeding,and breeding materials for watermelon planting innovation,as well as new opportunities for high-quality and high-yield watermelon.

Heritability of Main Yield Traits in Red-seed Watermelon and Their Correlation Analysis

[Objectives]This study was conducted to provide a reliable theoretical basis for the correct formulation of breeding programs for red-seed watermelon and the effective breeding of hybrid offspring.[Methods]With local varieties and inbred lines of red-seed watermelon as test materials,the generalized heritability of fruit number per plant,single-fruit weight,single-fruit seed number,single-fruit seed weight,seed kernel weight,1000-seed weight,kernel-producing ratio,seed production ratio and seed volume were estimated by variance analysis;and the heritability,genetic variation coefficients,and correlation of the nine yield traits in 43 red-seed watermelon varieties were studied.[Results]The generalized heritability of fruit number per plant,single-fruit weight,single-fruit seed number,single-fruit seed weight,seed kernel weight,1000-seed weight,kernel-producing ratio,seed production ratio and seed volume were 12.86%,80.14%,75.96%,74.39%,48.01%,17.12%,24.97%,18.60%,and 37.07%,respectively.The heritability of single-fruit weight,single-fruit seed number and single-fruit seed weight was higher,and early-generation individual selection could achieve a better effect on them;and 1000-seed weight and kernel-producing ratio had a higher coefficient of genetic variation,indicating a high selection potential.[Conclusions]Indirect selection could be achieved for traits such as the single-fruit seed number,single-fruit seed weight,seed kernel weight,and seed volume by selecting the single-fruit weight.In the process of red-seed watermelon breeding,traits with high heritability can be selected in early generations of hybrids,thus playing the role of early-generation orientation.

Effects of Different Concentrations of Paclobutrazol on Seedling Quality of Small Seedless Watermelon in Autumn

[Objectives]The paper was to explore the effects of different concentrations of paclobutrazol on seedling quality of small seedless watermelon in autumn.[Methods]The leaves of watermelon seedlings were sprayed with 30,50,80 and 120 mg/L paclobutrazol at cotyledon expansion stage,and those sprayed with tap water were used as control.[Results]All the treatments of paclobutrazol effectively inhibited the excessive growth of watermelon at seedling stage,significantly enhanced the leaf quality of watermelon seedlings and promoted root growth.The seedlings treated by 50 mg/L paclobutrazol had the best performance compared with the control:a decrease of hypocotyl by 37.9%,an increase of plant dry weight by 46.55%,significantly increased seedling strength index,deep green leaf color,thick leaves,an increase of specific leaf weight by 28.13%,and significantly heavier root weight and longer length.[Conclusions]The results will provide a reference for strong seedling cultivation of small seedless watermelon.

44份西瓜种质资源苗期耐盐性综合评价

以44份西瓜种质为试验材料,设置0(CK)和150 mmol·L^(-1)NaCl 2个处理水平,测定不同西瓜种质幼苗的15项指标。以15项指标的耐盐系数作为耐盐性评价依据,运用相关性分析、主成分分析、隶属函数值法、聚类分析等多元分析方法进行综合评价。通过主成分分析将15个单项指标转换为4个相互独立的综合指标,累计贡献率为71.10%;以耐盐系数为基础进行聚类分析,筛选出10个高度耐盐、21个中度耐盐、13个弱耐盐西瓜种质资源。采用隶属函数法进行综合评价,排名前5的种质分别是HY-91、DQ-308、W19-15、HY-73、W19-10,归为聚类分析中的第一类,属于强耐盐性品种。

Comparative Test on Spring Medium-sized Watermelon Varieties in Beijing

[Objectives]This study was conducted to select suitable medium-sized watermelon varieties for early spring cultivation in Beijing.[Methods]Seven watermelon varieties were collected,including Beinong Tianjiao 2,Beinong Tianjiao,Hongfuji,Yongfeng 1,Beinong Futian,Beinong Shijia,and Beinong Jinxiu,and Jingxin 2 was used as the control check(CK).The growth period,morphological traits,yield traits and fruit quality of the tested varieties were investigated.[Results]Beinong Tianjiao 2 had an earlier maturation stage,a fruit development period of 38 d and a total growth period of 118 d.It showed stable growth,with a single fruit weight of 7.56 kg,a fruit setting rate of 0.99 per plant,and a yield of 83076.9 kg/hm~2,which ranked,respectively,second,first,and second among all tested varieties,and were significantly superior to the CK.Furthermore,this variety had thin and tough peel,a bright red flesh color,high central sugar content,loose and crisp flesh,and a good taste.[Conclusions]It is preliminarily believed that it is suitable for early spring watermelon production in Beijing area.

Screening Test of Small Seedless Watermelon Varieties in Beijing Area

[Objectives]This study was conducted to select small seedless watermelon varieties with excellent quality and high yield suitable for planting in Beijing.[Methods]Under the conditions of facility cultivation in Beijing,a screening test was conducted on seven small seedless watermelon varieties for growth process,field traits,yield traits,fruit quality,and disease resistance.[Results]Varieties Mitong,Motong and Tianbao Xiaowuzi had a short growth period and relatively stable growth,and bore fruit easily,and their female flowers were closely spaced.Their yields exceeded 60000 kg/hm~2,ranking in the top three among all varieties.The fruit had a thin skin,a bright red flesh color,and a high mass fraction of soluble solids in the center.The flesh was tight or crispy,and tasted good.They also showed good disease resistance.Overall,they showed excellent comprehensive agronomic traits,and are thus suitable for facility cultivation in Beijing and its surrounding areas.[Conclusions]This study provides a theoretical basis for the upgrading of varieties and the increase in production and farmers'income in the suburbs of Beijing.

The Influence of Climate Variability on the Watermelon Production in Zanzibar

Climate change and variability, has embarked societies in Zanzibar to rely on horticulture (i.e. watermelon production) as an adaptive measure due to an unpromising situation of commonly used agricultural yields. Currently, there is either no or scant information that describes the influence of climate changes and variability to watermelon production in Zanzibar. Thus, this study aimed to determine the influence of climate variability on the quantity of watermelon production in Zanzibar. The study used both primary and secondary datasets, which include the anecdotal information collected from interviewers’ responses from four districts of Unguja and Pemba, and climate parameters (rainfall, maximum and minimum temperature (Tmax and Tmin) acquired from Tanzania Meteorological Authority (TMA) at Zanzibar offices. Pearson correlation was used for analyzing the association between watermelon production and climate parameters, while paired t-test was applied to show the significance of the mean differences of watermelon and climate parameters for two periods of 2014-2017 and 2018-2021, respectively. Percentage changes were used to feature the extent to which the two investigated parameters affect each other. The anecdotal responses were sorted, calculated in monthly and seasonal averages, plotted and then analyzed. Results have shown a strong correlation (r = 0.8 at p ≤ 0.02, and r = 0.7) between watermelon production, Tmax and rainfall during OND, especially in Unguja, as well as Tmin during JJA (i.e. r = - 0.8 at p ≤ 0.02) in Pemba. Besides, results have shown the existence of significant differences between the means of watermelon production and climate parameter for the two stated periods, indicating that the climate parameters highly affects the watermelon production by either enhancing or declining the yields by 69% - 162% and 17% - 77%, respectively. Moreover, results have shown that respondents were aware that excess temperature intensity during dry periods can lead to high production costs due number of soil and other environmental factors. Besides the results have shown that OND seasonal rainfall and MAM Tmax had good association with watermelon production in Unguja while JJA Tmin declined the production in Pemba. Thus, the study concludes that seasonal variability of climate parameter has a significant influence on the watermelon production. The study calls for more studies on factors affecting watermelon production (e.g. soil characteristics, pest sides and manure), and recommends for climate based decision making on rain fed agricultural yields and routine monitoring of weather information.

BSA联合转录组分析发掘西瓜叶片黄化候选基因

叶片是植物重要的功能器官之一,不仅是植株进行光合作用的主要场所,也可作为重要的形态标记,应用于育种中。叶片颜色作为形态标记,不仅可用于苗期杂种的清除,亦可用于种子纯度的测定。以西瓜全生育期叶片黄化突变体纯合自交系ly104为母本(P_(1))、绿叶自交系w3为父本(P_(2)),通过杂交创制F_(1)代、F_(2)代、BC_(1)代群体。遗传分析结果表明,该突变体的叶片黄化由单隐性基因控制。采用混合分组分析(BSA)进行初定位,通过简化基因组测序(RAD)开发全基因组单核苷酸多态性(SNP)标记构建西瓜高密度遗传图谱,将西瓜叶片黄化基因定位于2号染色体13950306~15517591 bp(大小约为1.57 Mb)。以西瓜97103v2为参考基因组,该区间包含24个注释基因。对P_(1)(P1Y)、P_(2)(P2G)和F 2代群体中黄叶(F2Y)、绿叶(F2G)株系进行转录组水平分析,结果表明,目标区间内基因Cla97C02G035950、Cla97C02G036010、Cla97C02G036020、Cla97C02G036060在黄化叶片与正常绿叶材料中的表达量差异显著,可能是西瓜叶片的黄化候选基因。研究结果可为进一步解析西瓜叶片黄化基因功能和生物学特性奠定重要基础。

设施西瓜连作土壤生化性质及微生物群落变化

为探索设施连作西瓜土壤微生态环境变化,通过高通量测序对连作组(连作10年设施西瓜土壤)和对照组(连作10年设施西瓜棚外相同土质的露天西瓜土壤)样品进行测序分析,比较2组土壤细菌和真菌的群落结构差异,测定土壤理化性质及酶活性。结果表明,连作组土壤pH、铵态氮、速效钾、微生物量碳、土壤酶活性极显著低于对照,而硝态氮和有效磷极显著高于对照组。连作组土壤中细菌ACE指数和Chaol指数均极显著高于对照组,土壤中真菌ACE指数、Chaol指数、Simpson指数和Shannon指数均低于对照组。土壤微生物优势物种组成改变,连作组土壤细菌变形菌门、芽单胞菌门、绿弯菌门及硝化螺旋菌门相对丰度较对照组分别增加了9.80%、20.83%、21.76%和27.12%(P<0.05),而酸杆菌门和疣微菌门较对照组分别减少了21.7%和26.27%(P<0.05);连作组土壤真菌子囊菌门相对丰度较对照组增加了10.96%(P<0.05),担子菌门和罗兹菌门的相对丰度分别较对照组减少了13.42%和93.77%(P<0.05)。相关性分析显示,优势菌门除Latescibacteria和己科河菌门丰度与所有土壤环境因子相关性均不显著外,其他优势菌群都与所测土壤环境因子(有机质除外)存在密切相关关系,土壤pH、铵态氮、有效磷、速效钾是影响土壤中微生物群落的主要因素,担子菌门和绿弯菌门能够指示土壤微生物量,微生物群落结构的变化对土壤酶活性有较大的影响。综上,设施西瓜连作10年土壤理化性质、酶活性及微生物群落结构皆显著变化,西瓜连作障碍是多种因素综合作用的结果。

西瓜蔗糖转运蛋白SUT家族的鉴定及其在果实发育和逆境响应中的表达分析

蔗糖转运蛋白(SUTs)作为蔗糖主动转运的主要载体,在分配同化物从源到库组织的转运中起着关键作用。尽管SUTs的特性及其生物学功能已在高等植物中得到了深入研究,但该基因家族尚未在西瓜中进行鉴定。本研究在西瓜基因组中共鉴定了4个ClSUT基因,并对其基因和蛋白结构、保守基序、亚细胞定位、染色体分布、进化关系、启动子元件等进行了全面分析。基因结构分析表明,亚族Ⅰ的ClSUT3和ClSUT4基因均只含有一个内含子。所有ClSUT均被预测定位在质膜中,它们均含有一个保守的MFS-2结构域,并且含有与之对应的5个保守基序。系统发育分析发现拟南芥、水稻和西瓜中的SUT分为5个亚族,西瓜ClSUT与拟南芥SUT的亲缘关系更近,被聚类在亚族Ⅰ、亚族Ⅱ和亚族Ⅴ。还在西瓜ClSUT基因的启动子中鉴定到一些与激素和逆境响应相关的作用元件。此外,转录组数据表明,西瓜ClSUT基因的表达对渗透和盐胁迫呈现多样性,很可能参与西瓜对这些逆境的响应。

西瓜果实网条突变体的转录组分析

以条纹自交系西瓜(TD)和网条突变体西瓜(WT)为材料,通过分离群体的条纹性状比例探索西瓜的条性状遗传基础;以转录组测序及表达差异分析为基础,探索网条突变体西瓜在不同发育阶段的表达谱变化,筛选出条纹自交系与网条突变体西瓜之间表达差异显著的基因57个,主要富集于光合作用天线蛋白通路、生物碱生物合成通路、氨基酸代谢通路等7种代谢途径;通过加权基因共表达网络对核心基因的进一步分析,初步挖掘出部分网条突变体西瓜中有关生物胁迫抗性的基因变化情况,进一步筛选确定西瓜深绿条纹基因(ClGS,watermelon dark-green stripe)、类半胱氨酸蛋白酶抑制剂5编码基因、UDP-葡萄糖基转移酶编码基因、类长春碱合成酶编码基因、叶绿素a-b结合蛋白编码基因可能是决定西瓜网条果皮性状的核心基因;qRT-PCR验证结果表明,条纹自交系西瓜与网条突变体西瓜在基因表达上存在明显差异。本研究为西瓜不同果皮条纹育种提供了新的种质资源,也为阐明西瓜不同果皮条纹性状形成的分子调控机制提供了一定的理论依据。