Altitude as environmental filtering influencing phylogenetic diversity and species richness of plants in tropical mountains

Elucidating how multiple factors affect biodiversity and plant community assembly is a central issue in ecology,especially in vulnerable ecosystems such as tropical mountains.These studies are more relevant in global warming scenarios that induce the upward displacement of plant species towards reduced habitats and hostile environments in tropical mountains.This study aimed to analyze how altitude affects taxonomic and phylogenetic diversity in plant communities of tropical mountains.Thus,we tested if(i)increased altitude works as an environmental filtering promoting decreased species richness,decreased phylogenetic diversity,and increased phylogenetic clustering in these tropical mountains;and if(ii)plant communities of high altitude in tropical mountains are also result of recent diversification with plant species recently split shortening phylogenetic distances between closest related species.We tested effects of altitude on species richness and phylogenetic metrics using linear mixed-effects models.Mount Haleakala presented 114 species,Mount Kilimanjaro presented 231 species and Mount Purace presented 280 species.We found an environmental filtering effect with increasing altitude causing phylogenetic clustering,decreased phylogenetic diversity and decreased species richness.The decreasing phylogenetic distances between closest relatives are congruent with neo-endemics,suggesting recent plant diversification in high altitudes of tropical mountains,possibly driven by geographic isolation and environmental heterogeneity.Consequences of global warming should be monitored in tropical mountains focusing on distribution shifts.

Grazing exclusion-induced shifts,the relative importance of environmental filtering,biotic interactions and dispersal limitation in shaping desert steppe communities,northern China

Grazing exclusion is one of the most efficient approaches to restore degraded grassland but may negatively affects the recovery of species diversity. Changes in plant species diversity should be a consequence of the ecological assembly process. Local community assembly is influenced by environmental filtering, biotic interactions, and dispersal. However, how these factors potentially contribute to changes to species diversity is poorly understood, especially in harsh environments. In this study, two management sites within a Stipa breviflora desert steppe community（typical natural steppe） were selected in northern China. In one of the two management sites, grazing has been excluded since 2010 and in the other with open grazing by sheep. In August 2016, three plots were established and 100 sampling units were created within each plot in a 5 m×5 m area at the two management sites. To assess the effects of grazing exclusion on S. breviflora steppe, we analyzed the vegetation biomass, species diversity,soil organic carbon, and soil particle size distribution using paired T-tests. In addition, variation partitioning was applied to determine the relative importance of environmental filtering and dispersal limitation. Null mode analysis was used to quantify the influence of biotic interactions in conjunction with Eco Sim niche overlap and co-occurrence values. Our results demonstrated that（1） species diversity significantly decreased and the main improvements in soil quality occurred in the topsoil 0–10 cm after the grazing exclusion;（2） environmental filtering was important for community assembly between grazed and fenced grassland and this appears particularly true for soil particle size distribution, which may be well correlated with soil hydrological processes; and（3） however, competitive exclusion may play a significant role within the exclusion. The multiple pathways of assembly may collectively determine negative effects on the restoration of species diversity. Therefore, designers should be aware of the risk of reducing grazing exclusion-induced species diversity and account for manipulating processes. This in turn will reduce dominant species and promote environmental heterogeneity to maximize species diversity in semi-arid regions.

Environmental filtering and spatial processes equally contributed to macroinvertebrate metacommunity dynamics in the highly urbanized river networks in Shenzhen, South China

Background:Disentangling the relative roles of environmental filtering and spatial processes in structuring ecological communities is a central topic in metacommunity ecology.Metacommunity ecology in the temperate river ecosystems has been well developed,while less attention has been paid to subtropical urban river networks.Here,we examined the ecological factors and seasonal difference in structuring macroinvertebrates metacommunity assembly in the subtropical urban river networks in Shenzhen,South China.Results:Our results revealed that there was no significant distinction of macroinvertebrate community composition among seasons,with only the relative abundance of Mollusca and Odonata significantly differed in both wet and dry seasons.One possible explanation was that most macroinvertebrates are generally pollution-tolerant taxa characterized with nonseasonal life cycle.In addition,distance-based redundancy analysis and variation partitioning approach revealed that metacommunity was determined equally by the environmental and dispersal-related factors.Further,our results showed that,although a slight temporal variation of relative contribution,the identity and explanation power of ecological factors were different among seasons.Specifically,stronger environmental filtering structuring community dynamics was observed in the dry than wet seasons,which might be owing to higher environmental heterogeneity under a low water-flow condition.Moreover,we detected that the influence of spatial processes was stronger in the wet than dry seasons,indicating an obvious dispersal processes due to high connectivity among sites.Conclusion:Overall,our results revealed that environmental and spatial factors equally explained variations of macroinvertebrate metacommunity,implying the necessity of considering dispersal-related processes structuring ecological communities in river bioassessment programs.Moreover,degraded habitat conditions and water quality were the predominant factors that affected macroinvertebrate communities,indicating the significance and feasibility of improving local abiotic conditions to sustain local biodiversity.Further,our findings revealed the importance of seasonal dynamics of these urban river networks in structuring macroinvertebrate metacommunity.Thereby,our study improves the understanding of ecological processes governing macroinvertebrate metacommunity and underlines the idea that community ecology studies should go beyond the single snapshot survey in river networks.

Patterns and drivers of avian taxonomic and phylogenetic beta diversity in China vary across geographical backgrounds and dispersal abilities

Geographical background and dispersal ability may strongly influence assemblage dissimilarity;however,these aspects have generally been overlooked in previous large-scale beta diversity studies.Here,we examined whether the patterns and drivers of taxonomic beta diversity(TBD)and phylogenetic beta diversity(PBD)of breeding birds in China vary across(1)regions on both sides of the Hu Line,which demarcates China’s topographical,climatic,economic,and social patterns,and(2)species with different dispersal ability.TBD and PBD were calculated and partitioned into turnover and nestedness components using a moving window approach.Variables representing climate,habitat heterogeneity,and habitat quality were employed to evaluate the effects of environmental filtering.Spatial distance was considered to assess the impact of dispersal limitation.Variance partitioning analysis was applied to assess the relative roles of these variables.In general,the values of TBD and PBD were high in mountainous areas and were largely determined by environmental filtering.However,different dominant environmental filters on either side of the Hu Line led to divergent beta diversity patterns.Specifically,climate-driven species turnover and habitat heterogeneity-related species nestedness dominated the regions east and west of the line,respectively.Additionally,bird species with stronger dispersal ability were more susceptible to environmental filtering,resulting in more homogeneous assemblages.Our results indicated that regions with distinctive geographical backgrounds may present different ecological factors that lead to divergent assemblage dissimilarity patterns,and dispersal ability determines the response of assemblages to these ecological factors.Identifying a single universal explanation for the observed pattern without considering these aspects may lead to simplistic or incomplete conclusions.Consequently,a comprehensive understanding of large-scale beta diversity patterns and effective planning of conservation strategies necessitate the consideration of both geographical background and species dispersal ability.

Relative Contributions of Spatial and Environmental Processes and Biotic Interactions in a Soil Collembolan Community

Understanding the underlying processes of how communities are structured remains a central question in community ecology. However, the mechanisms of the soil animal community are still unclear, especially for communities on a small scale. To evaluate the relative roles of biotic interactions and environmental and spatial processes in a soil collembolan community, a field experiment was carried out on a small scale(50 m) in the farmland ecosystem of the Sanjiang Plain, Northeast China. In August and October, 2011, we took 100 samples each month in a 50 m × 50 m plot using a spatially delimited sampling design. Variation partitioning was used to quantify the relative contributions of the spatial and environmental variables. A null model was selected to test for the non-randomness pattern of species co-occurrence and body size in assemblages of collembolans and to test whether the pattern observed was the result of environmental or biotic processes that structured the community on a small scale. The results showed that large variance was accounted for by spatial variables(18.99% in August and 21.83% in October, both were significant). There were relatively lower effects of environmental variation(3.56% in August and 1.45% in October, neither was significant), while the soil water content, soil p H and soybean height explained a significant portion of the variance that was observed in the spatial pattern of the collembolan community. Furthermore, the null model revealed more co-occurrence than expected by chance, suggesting that collembolan communities had a non-random co-occurrence pattern in both August and October. Additionally, environmental niche overlap and the body size ratio of co-occurrence showed that interspecific competition was not influential in collembolan community structuring. Considering all of the results together, the contributions of spatial and environmental processes were stronger than biotic interactions in the small-scale structuring of a soil collembolan community.

Inference of Fish Community Assembly in Intermittent Rivers Using Joint Species Distribution Models and Trophic Guilds

Mechanisms that drive species co-occurrence are poorly documented for intermittent rivers of semiarid regions. Here, we investigated fish community assembly in response to habitat types and physicochemical conditions in intermittent rivers of the lower Okavango Delta, Botswana. Using Joint Species Distribution Models, we inferred relative influences of environmental filtering and species interactions on patterns of species co-occurrence. Fishes were surveyed from multiple locations during drought and flood phases of the annual hydrological cycle. Species were classified into trophic guilds to facilitate inference about the types of species interactions that influence community structure. Water physicochemistry (depth, temperature, and dissolved oxygen concentration) was significantly associated with species distributions, whereas habitat type (ephemeral vs. permanent) was not significantly associated with species distribution. Controlling for the influence of environmental covariates resulted in three negative residual correlations, of which two involved non-predatory fishes from different trophic guilds, suggesting a behavioral selection of, or enhanced survival within, habitats with different environmental conditions. There was a negative residual correlation between a predator and a potential prey species, suggesting a role for predation mortality or threat in species segregation. Our results demonstrate that using trophic guilds in conjunction with JSDMs can enhance inferences about mechanisms of community assembly.

Effect of climate and altitude on plant community composition and richness in Brazilian inselbergs

Plant communities are shaped by multiple factors along environmental gradients;however,studies are limited on how environmental filtering drives community composition and species richness on tropical inselbergs.We evaluate the influence of altitude and climatic variables related to temperature and precipitation on plant community composition and species richness on Brazilian inselbergs.We assume as a premise that both climate and altitude would induce changes on plant community composition and species richness at the local level.We used plant inventory data from 370 sampling units across four inselberg sites in the Atlantic Forest of Espírito Santo State,south-eastern Brazil.We tested the univariate and multivariate effects of altitude and climate variables on community composition and species richness with multiple models.Differences in species richness between inselbergs were evaluated using sample-based data to estimate rarefaction and extrapolation curves.In addition,differences in species composition and taxonomic beta diversity were examined via novel frequency-based metrics.A contrasting climate pattern was observed between the inselberg sites,with south sites being wet compared to the dry conditions found in northern sites.Species richness by rarefaction showed a similar pattern within regional sites;however,there were marked differences between regions.Species richness and beta diversity showed significant differences among sites,with higher values in southern sites than in northern sites.In a multi-model comparison between inselberg sites,altitude significantly influenced community composition and species richness and explained more variance than climate models.This finding suggested that climate could act to some extent on these tropical inselbergs;however,altitude was a better predictor of plant community composition and species richness at the local level.

Multidimensional amphibian diversity and community structure along a 2600 m elevational gradient on the eastern margin of the Qinghai-Tibetan Plateau

Mountain systems harbor an evolutionarily unique and exceptionally rich biodiversity,especially for amphibians.However,the associated elevational gradients and underlying mechanisms of amphibian diversity in most mountain systems remain poorly understood.Here,we explored amphibian phylogenetic and functional diversity along a 2600 m elevational gradient on Mount Emei on the eastern margin of the Qinghai-Tibetan Plateau in southwestern China.We also assessed the relative importance of spatial(area)and environmental factors(temperature,precipitation,solar radiation,normalized difference vegetation index,and potential evapotranspiration)in shaping amphibian distribution and community structure.Results showed that the phylogenetic and functional diversities were unimodal with elevation,while the standardized effect size of phylogenetic and functional diversity increased linearly with elevation.Phylogenetic net relatedness,nearest taxon index,and functional net relatedness index all showed a positive to negative trend with elevation,indicating a shift from clustering to overdispersion and suggesting a potential change in key processes from environmental filtering to competitive exclusion.Overall,our results illustrate the importance of deterministic processes in structuring amphibian communities in subtropical mountains,with the dominant role potentially switching with elevation.This study provides insights into the underlying assembly mechanisms of mountain amphibians,integrating multidimensional diversity.

Functional and phylogenetic structures of pheasants in China

Biodiversity has been subjected to increasing anthropogenic pressures.It is critical to understand the different processes that govern community assembly and species coexistence under biogeographic processes and anthropogenic events.Pheasants(Aves:Phasianidae)are highly threatened birds and China supports the richest pheasant species worldwide.Unravelling the spatial patterns and underlying factors associated with multidimensional biodiversity of species richness(SR),functional diversity(FD),and phylogenetic diversity(PD)of pheasants in China is helpful to understand not only the processes that govern pheasant community assembly and species coexistence,but also pheasant biodiversity conservation.We used a total of 45 pheasant species in China and analyzed the SR,FD,PD,and functional and phylogenetic structures by integrating species distribution maps,functional traits and phylogenies based on 50 km×50 km grid cells.We further used simultaneous autoregressive(SAR)models to explore the factors that determined these patterns.The southern Qinghai-Tibetan Plateau(QTP),Hengduan Mountains,southwestern Mountains,the east of the Qilian Mountains,the Qinling,southern China displayed higher SR,FD,and PD,which were determined by elevation,habitat heterogeneity,temperature seasonality,and vegetation cover.Elevation primarily determined the functional and phylogenetic structures of the pheasant communities.Assemblages in the highlands were marked by functional and phylogenetic clustering,particularly in the QTP,whereas the lowlands in eastern China comprised community overdispersion.Clustered pheasant assemblages were composed of young lineages.Patterns of functional and phylogenetic structures and richness-controlled functional and phylogenetic diversity differed between regions,suggesting that phylogenetic structures are not a good proxy for identifying functional structures.We revealed the significant role of elevation in pheasant community assemblages in China.Highlands interacted with community clustering,whereas lowlands interacted with overdispersion,supporting the environmental filtering hypothesis.Biogeographical drivers other than anthropogenic factor determined biodiversity of pheasants at the present scale of China.This study provides complementary background resources for multi-dimensional pheasant biodiversity and provides insights into avian biodiversity patterns in China.

Phylogenetic pattern of alpine plants along latitude and longitude in Hengduan Mountains Region

To detect the horizontal pattern of phylogenetic structure shown by alpine plants, we measured phylogenetic structure using net related index(NRI) and net nearest taxon index(NTI), and analyzed the phylogenetic structure patterns of alpine plants along longitude, latitude and environmental gradients in the Hengduan Mountains Region(HDMR). Our results show that: 1) the phylogenetic structure tended to cluster with increasing latitude and longitude; 2) for NRI, latitude was closer related than longitude,while for NTI, longitude was closer related than latitude, though they both not significantly relate to NTI.The phylogenetic structure tended towards overdispersion in the southern HDMR, with good climate conditions of higher mean annual temperature and more mean annual precipitation. In contrast, with harsh climate conditions of lower mean annual temperature and less mean annual precipitation, the increasing environmental stress led to phylogenetic clustering in the northern HDMR. The results highlighted that in the alpine region of HDMR, environmental filters and geographical isolation had a great effect on the latitudinal and longitudinal alpine species distribution, respectively.

Old climatically-buffered infertile landscapes(OCBILs):more than harsh habitats,Atlantic Forest inselbergs can be drivers of evolutionary diversity

Granite-gneiss rock outcrop inselbergs are ancient stable ecosystems with old,climaticallybuffered infertile landscapes(OCBILs).Although inselbergs provide key ecosystem services,little is done for their conservation and,so far,a lot of their unknown evolutionary history has already been lost by human activities.Using a fine-scale approach,here we tested if habitat and environmental filtering(the inselberg’s harshness)affect the evolutionary diversity of an Atlantic Forest inselberg in Brazil.We recorded all trees with a diameter at breast height≥5cm in 20 plots in four habitat types(total sampled area of 0.8 hectares),from highest to lowest:island,hillside,foothill,and semideciduous forest(matrix).We also collected soil samples for chemical,textural and physical soil characterization.We fitted linear models to test the effects of soil and habitat on plotlevel metrics of phylogenetic diversity and structure,lineage diversity,phylogeneticβ-diversity,and evolutionary distinctiveness.We found that the upper inselberg habitats contain a distinct set of ancient,closely related,harsh-tolerant lineages,as well as a subset of lineages that persist under harsh conditions with a certain degree of water availability.The inferior inselberg habitats harbor higher lineage diversity than expected by chance.Soil strongly predicted evolutionary diversity.We concluded that soil depth,slope,nutrients and texture(environmental filtering)and habitat types and topography(habitat filtering)shape the evolutionary history contained in fine-scale inselberg habitats,which should encourage the conservation of these ancient ecosystems.

Environmental and spatial contributions to seedling and adult tree assembly across tropical,subtropical and subalpine elevational gradients

Aims Quantifying the relative importance of the mechanisms that drive community assembly in forests is a crucial issue in community ecol-ogy.The present study aims to understand the ways in which niche-based and spatially based processes influence community assembly in areas in different climatic conditions and how these processes change during the transition from seedling to adult.Methods In this study,we investigated how taxonomic and phylogenetic beta diversity in seedling and adult stages of forest trees change across three elevational transects in tropical,subtropical and subalpine for-ests in Southwest China,and the relationships of these changes to the environment and inter-site distances.We quantified the relative contribution of environmental conditions and spatial distribution to taxonomic and phylogenetic beta diversity of both seedling and adult life stages along each elevational transect.We also quantified the taxonomic and phylogenetic similarity between seedlings and adult trees along elevations.Important Findings Taxonomic and phylogenetic beta diversity of both seedlings and adult trees increased with an increase in both environmental distance and spatial distance in all three transects.On both taxonomic and phylo-genetic levels,the effects of environmental filtering and spatial dispos-ition varied between life stages and among forest types.Phylogenetic similarity between seedlings and adult trees increased with elevation,although the taxonomic similarity did not show clear elevational pat-terns.Our results suggest that the relative contribution of niche-based and space-based processes to taxonomic and phylogenetic assem-blages varies across major plant life stages and among forest types.Our findings also highlight the importance of ontogenetic stages for fully understanding community assembly of long-lived tree species.

Disentangling spatial,environmental and historical effects on tropical forest tree species turnover

Aims We aimed at disentangling the effects of spatial distance,current and past environmental dissimilarity,and their combinations on tree community taxonomic and phylogenetic turnover by addressing the following questions:(i)Is tree community taxonomic and phylogenetic turnover related to the indirect effects of spatial distance via environmental dissimilarity?(ii)Does tree community taxonomic and phylogenetic turnover respond to paleoclimate(Last Glacial Maximum and Mid-Holocene)?Methods The study was carried out in 14 Atlantic rainforest sites in Brazil(20.4 ha sampled)containing 615 tree species from 83 plant families.We obtained plot-level geographic coordinates and soil variables and site-level bioclimatic variables in the current,Mid-Holocene and Last Glacial Maximum.We used structural equation models with a distance-based approach to(i)test the direct effects of spatial distance and environmental dissimilarity and(ii)test the indirect effects of spatial distance via environmental dissimilarity on taxonomic(Bray–Curtis distance)and phylogenetic turnover(Comdist and Comdistnt distances).Important Findings Our results suggest a weak indirect effect of spatial distance via environmental dissimilarity on taxonomic and phylogenetic turnover.Tree community turnover was driven by the direct effects of neutral,niche-based and historical processes.Thus,we inferred that the paleoclimate(historical processes)promoted the selection of the clades that gave rise to the current flora,while spatial distances(neutral processes)limited the dispersal range of species from the regional pool and environmental conditions(niche-based processes)locally selected the taxa that are able to persist.

Trait-based filtering from the regional species pool into local grassland communities

Aims For plants to establish in a local community from a pool of possible colonizers from the region,it must pass through a series of filters.Which of the filters is most important in this process has been much debated.In this study,we explored how species are filtered from the regional species pool into local communities.the aim was to determine if differences in species abundance and functional traits could explain which species from the regional species pool estab-lish at the local scale and if the filtering differed between grassland communities.Methods this study took place in a cultivated landscape in southeastern sweden.We estimated plant species abundance in 12 ex-arable field sites and 8 adjacent seminatural grassland sites and in a 100-m radius around the center of each site.We used monte Carlo simula-tions to examine if species abundance and functional traits(height,seed mass,clonal abilities,specific leaf area and dispersal method)controlled the filtering of species from the regional pool into local communities.Important Findingson average,only 28%of species found in the regional pool established in the ex-arable field sites and 45%in the seminatural grassland sites,indicating that the size of the regional species pool was not limiting local richness.For both grassland types,species abundance in the regional pool was positively correlated with species occurrence at the local scale.We found evidence for both species interaction filtering and dispersal limitation influencing the local assembly.both local and regional processes were thus influencing the filtering of species from the regional species pool into local communities.In addition,the age of the communities influenced species filtering,indicating that community assembly and the importance of different filters in that process change over succession.

A principal consideration on general Bayes'filters for a state estimation of environmental sound and vibration systems

This paper describes a fundamental consideration on our works on the design of general Bayes' filters for the state estimation of non-stationary, non-linear, and non-Gaussian environmental sound and vibration systems. We have discussed an essential point of several Bayes' filters proposed by using the orthogonal or non-orthogonal expansion form of Bayes' theorem. They can estimate any kinds of statistics of arbitrary function type of state variables including the lower and the higher order statistics connected with the Lx evaluation index in the environmental sound and vibration systems. Here, we have mainly focussed on giving the fundamental viewpoints of their design policies. Some new estimation methods and new results not yet published are included.

Climatic correlates of phylogenetic relatedness of woody angiosperms in forest communities along a tropical elevational gradient in South America

Aims This study assesses the relationship between phylogenetic relat-edness of angiosperm tree species and climatic variables in local forests distributed along a tropical elevational gradient in South America.In particular,this paper addresses two questions:Is phylo-genetic relatedness of plant species in communities related to tem-perature variables more strongly than to water variables for tropical elevational gradients?Is phylogenetic relatedness of plant species in communities driven by extreme climatic conditions(e.g.minimum temperature(MT)and water deficit)more strongly than by climatic seasonal variability(e.g.temperature seasonality and precipitation seasonality)?Methods I used a set of 34 angiosperm woody plant assemblages along an elevational gradient in the Andes within less than 5 degrees of the equator.Phylogenetic relatedness was quantified as net relatedness index(NRI)and nearest taxon index(NTI)and was related to major climatic variables.Correlation analysis and structure equation modeling approach were used to assess the relationships between phylogenetic relatedness and climatic variables.Important Findings Phylogenetic relatedness of angiosperm woody species in the local forest communities is more strongly associated with temperature-related variables than with water-related variables,is positively cor-related with mean annual temperature(MAT)and MT,and is related with extreme cold temperature more strongly than with seasonal temperature variability.NTI was related with elevation,MAT and MT more strongly than was NRI.Niche convergence,rather than niche conservatism,has played a primary role in driving community assem-bly in local forests along the tropical elevational gradient examined.Negative correlations of phylogenetic relatedness with elevation and higher correlations of phylogenetic relatedness with elevation and temperature for NTI than for NRI indicate that evolution of cold toler-ance at high elevations in tropical regions primarily occurred at recent(terminal)phylogenetic nodes widely distributed among major clades.

Plant-associated fungal communities in the light of meta’omics

Approaches for the cultivation-independent analysis of microbial communities are summarized as meta’omics,which predominantly includes metagenomic,-transcriptomic,-proteomic and-metabolomic studies.These have shown that endophytic,root-associated and soil fungal communities are strongly shaped by associated plant species.The impact of plant identity on the composition of its litterssociated fungal community remains to be disentangled from the impact of litter chemistry.The composition of the plant community also shapes the fungal community.Most strikingly,adjacent plant species may share mycorrhizal symbionts even if the plants usually have different types of mycorrhizal fungi associated with them(ectomycorrhizal,ericoid and arbuscular mycorrhizal fungi).Environmental parameters weakly explain fungal community composition globally,and their effect is inconsistent at local and regional scales.Decrease in similarity among communities with increasing distance(i.e.distance decay)has been reported from local to global scales.This pattern is only exceptionally caused by spatial dispersal limitation of fungal propagules,but mostly due to the inability of the fungi to establish at the particular locality(i.e.environmental filtering or competitive exclusion).Fungal communities usually undergo pronounced seasonal changes and also differ between consecutive years.This indicates that development of the communities is usually not solely cyclic.Meta’omic studies challenge the classical view of plant litter decomposition.They show that mycorrhizal and(previously)endophytic fungi may be involved in plant litter decomposition and only partly support the idea of a succession from an Ascomycota to a Basidiomycota-dominated community.Furthermore,vertical separation of saprotrophic and mycorrhizal species in soil and sequential degradation from easily accessible to‘recalcitrant’plant compounds,such as lignin,can probably not be generalized.The current models of litter decomposition may therefore have to be eventually refined for certain ecosystems and environmental conditions.To gain deeper insights into fungal ecology,a meta’omic study design is outlined which focuses on environmental processes,because fungal communities are usually taxonomically diverse,but functionally redundant.This approach would initially identify dynamics of chemical shifts in the host and/or substrate by metametabolomics.Detected shifts would be subsequently linked to microbial activity by correlation with metatranscriptomic and/or metaproteomic data.A holistic trait-based approach might finally identify factors shaping taxonomic composition in communities against the dynamics of the environmental process(es)they are involved in.

Latitudinal and elevational patterns of phylogenetic structure in forest communities in China’s mountains

The phylogenetic structure incorporates both ecological and evolutionary processes to explain assembly of a local community.The "phylogenetic niche conservatism"(PNC) hypothesis suggests that distributions of species along environmental gradients reflect both ancestral traits and ecological fitness of individual species. The temperature is generally regarded to change in similar ways along both latitudinal and elevational gradients but with different historical contingence. Therefore, comparing the latitudinal and elevational patterns of phylogenetic structure of communities is of help to depict the effects of ecological and evolutionary processes in shaping the community assembly. In this study, we explored the latitudinal, elevational and climatic patterns of phylogenetic structure of 569 angiosperm tree communities from 38 mountains across China. We found a larger mean abundance-weighted net relatedness index(NRI) than the presence/absence-based NRI;and the NRI decreased when the species pool downscaled from the full pool to county-level pool. The mean family age and phylogenetic species evenness decreased with latitude, and increased with temperature of the coldest month and precipitation;whilst NRI increased with latitude, and decreased with mean temperature of the coldest month. In most mountains, NRI, mean family age and phylogenetic species evenness showed non-significant trends along the elevational gradient. Our results support the main predictions of PNC for the latitudinal gradient, i.e., species tend to be more phylogenetically related to each other and clades are younger in temperate environments,compared to those in tropical environments. We suggested that independent species pools and abundance should be incorporated in analysis to fully represent the phylogenetic structure of communities.

Relationship between clade age and temperature for angiosperm tree species in forest communities along an elevational gradient in tropical Asia

Aims The tropical conservatism hypothesis(TCH)links environmental tolerance,diversification,dispersal and evolutionary history in explaining why warm,wet tropical regions harbor more species than colder,drier regions.The TCH is considered as a dominant explanation for broad-scale patterns of species richness across the globe,such as the latitudinal diversity gradient.At its core,the TCH predicts a positive relationship between clade age and tempera-ture.Here,I test this prediction using a data set of angiosperm tree assemblages from Malesia.Methods I assembled an altitudinal gradient of 15 communities of angio-sperm trees.I calculated the mean family age(MFA)of tree species for each community.I used ordinary regression analysis and spatial autoregression analysis to determine the relationships of species richness and MFA with elevation,temperature and precipitation.I used correlation analysis to assess relationships between paired variables.Important Findings MFA is negatively correlated with tree species richness,and increases with elevation and decreases with temperature for the alti-tudinal gradient.MFA remains significantly increasing with decreas-ing temperature along the altitudinal gradient after accounting for spatial autocorrelation in a species-ordination space.The negative relationship between clade age and temperature along the altitudi-nal gradient in Malesia is contrary to the TCH.

Using functional trait diversity to infer community assembly mechanisms:an exclosure experiment as an example

Aims The Qinghai-Tibetan Plateau has a mean altitude exceeding 4000 m and covers about 2.5 million km2.More than 60%of this area is alpine grassland.Exclosures have been widely used in this region to study the sustainable use of grassland resources.We used patterns of functional trait diversity to infer the effects of exclosures on com-munity assembly in alpine meadows.Methods We studied functional diversity using five traits under grazing and three enclosed(exclosure)plots(3,8,and 18 years old)in an alpine meadow on the Qinghai-Tibetan Plateau.We quantified the strength of the community assembly processes by comparing the observed functional trait diversity with a null model that assumes random community assembly.Important findings We found evidence for deterministic assembly processes for plant communities in exclosures.The changes in CWM of the five traits from grazing land to 18-year exclosure indicated that environmen-tal filtering occurred due to the exclosures.Multivariate functional diversity(MFDis and MPDses),and functional diversity of individual traits,including that of leaf area,leaf weight and aboveground bio-mass(FDis of leaf area,leaf weight,and aboveground biomass),increased gradually from grazing land to the 18-year exclosure,and the values of the 18-year exclosure were significantly greater than null expectation.This can be interpreted to indicate that exclosures resulted in greater competitive interaction between species.These results suggest that the effect of exclosures on community assembly is more deterministic than stochastic in this meadow.