Different extensions, such as Transition State theory of Eyring-Polanyi-Evans model of the original Born-Kramers-Slater Model for the Velocity of Chemical Reactions are discussed based on Smoluchowski and Fokker-Plank...Different extensions, such as Transition State theory of Eyring-Polanyi-Evans model of the original Born-Kramers-Slater Model for the Velocity of Chemical Reactions are discussed based on Smoluchowski and Fokker-Plank equations with various properties of Brownian motion and including 1-, 2-, 3-, and multi- dimensional models with applications in Neuroscience.展开更多
An implicit finite difference method is developed for a one-dimensional frac- tional percolation equation (FPE) with the Dirichlet and fractional boundary conditions. The stability and convergence are discussed for ...An implicit finite difference method is developed for a one-dimensional frac- tional percolation equation (FPE) with the Dirichlet and fractional boundary conditions. The stability and convergence are discussed for two special cases, i.e., a continued seep- age flow with a monotone percolation coefficient and a seepage flow with the fractional Neumann boundary condition. The accuracy and efficiency of the method are checked with two numerical examples.展开更多
The phenomenon of stochastic bifurcation driven by the correlated non-Gaussian colored noise and the Gaussian white noise is investigated by the qualitative changes of steady states with the most probable phase portra...The phenomenon of stochastic bifurcation driven by the correlated non-Gaussian colored noise and the Gaussian white noise is investigated by the qualitative changes of steady states with the most probable phase portraits.To arrive at the Markovian approximation of the original non-Markovian stochastic process and derive the general approximate Fokker-Planck equation(FPE),we deal with the non-Gaussian colored noise and then adopt the unified colored noise approximation(UCNA).Subsequently,the theoretical equation concerning the most probable steady states is obtained by the maximum of the stationary probability density function(SPDF).The parameter of the uncorrelated additive noise intensity does enter the governing equation as a non-Markovian effect,which is in contrast to that of the uncorrelated Gaussian white noise case,where the parameter is absent from the governing equation,i.e.,the most probable steady states are mainly controlled by the uncorrelated multiplicative noise.Additionally,in comparison with the deterministic counterpart,some peculiar bifurcation behaviors with regard to the most probable steady states induced by the correlation time of non-Gaussian colored noise,the noise intensity,and the non-Gaussian noise deviation parameter are discussed.Moreover,the symmetry of the stochastic bifurcation diagrams is destroyed when the correlation between noises is concerned.Furthermore,the feasibility and accuracy of the analytical predictions are verified compared with those of the Monte Carlo(MC)simulations of the original system.展开更多
In this work, we report on a closed-form formulation for the build-up factor and absorbed energy, in one and two di- mensional Cartesian geometry for photons and electrons, in the Compton energy range. For the one-dim...In this work, we report on a closed-form formulation for the build-up factor and absorbed energy, in one and two di- mensional Cartesian geometry for photons and electrons, in the Compton energy range. For the one-dimensional case we use the LTSN method, assuming the Klein-Nishina scattering kernel for the determination of the angular radiation intensity for photons. We apply the two-dimensional LTSN nodal solution for the averaged angular radiation evaluation for the two-dimensional case, using the Klein-Nishina kernel for photons and the Compton kernel for electrons. From the angular radiation intensity we construct a closed-form solution for the build-up factor and evaluate the absorbed energy. We present numerical simulations and comparisons against results from the literature.展开更多
While the signal field + ASE noise pass through a span of transmission fiber, a dispersion compensation grating and a fiber amplifier(with the generation of ASE noise), the nonlinear Fokker-Plank equations, describing...While the signal field + ASE noise pass through a span of transmission fiber, a dispersion compensation grating and a fiber amplifier(with the generation of ASE noise), the nonlinear Fokker-Plank equations, describing the probability transforms of the field, are established and solved. Based on these statistical theories, the probability distributions of the signal + ASE noise field through 50km NZDSF, a dispersion compensation grating and a fiber amplifier link, are obtained. The dispersion and nonlinear effects in transmission fiber induce frequency offsets in the probability distribution of field and they cannot be dissipated by dispersion compensation. The generation of ASE noise in the amplifier will accelerate this frequency offset.展开更多
The polymer translocation through a nanopore from a donor space(or named cis side) to a receiver space(trans side) in the chaperone-induced crowded environment has attracted increasing attention in recent years due to...The polymer translocation through a nanopore from a donor space(or named cis side) to a receiver space(trans side) in the chaperone-induced crowded environment has attracted increasing attention in recent years due to its significance in biological systems and technological applications. In this work, we mainly focus on the effects of chaperone concentration and chaperone-polymer interaction on the polymer translocation. By assuming the polymer translocation to be a quasi-equilibrium process, the free energy F of the polymer can be estimated by Rosenbluth-Rosenbluth method and then the translocation time τ can be calculated by Fokker-Plank equation based on the obtained free energy landscape. Our calculation results show that the translocation time can be controlled by independently tuning the chaperone concentration and chaperone-polymer interaction at the cis side or the trans side. There exists a critical chaperone-polymer attraction ε~*=-0.2 at which the volume exclusion and interaction effects of the chaperone can balance each other. Additionally, we also find that at large chaperone-polymer attraction, the translocation time is mainly governed by the diffusion coefficient of the polymer.展开更多
We present a formula approximating the mean escape time(MST)of a particle from a tilted multi-periodic potential well.The potential function consists of a weighted sum of a finite number of component functions,each of...We present a formula approximating the mean escape time(MST)of a particle from a tilted multi-periodic potential well.The potential function consists of a weighted sum of a finite number of component functions,each of which is periodic.For this particular case,the least period of the potential function is a common period amongst all of its component functions.An approximation of the MST for the potential function is derived,and this approximation takes the form of a product of the MSTs for each of the individual periodic component functions.Our first example illustrates the computational advantages of using the approximation for model validation and parameter tuning in the context of the biological application of DNA transcription.We also use this formula to approximate the MST for an arbitrary tilted periodic potential by the product of MSTs of a finite number of its Fourier modes.Two examples using truncated Fourier series are presented and analyzed.展开更多
文摘Different extensions, such as Transition State theory of Eyring-Polanyi-Evans model of the original Born-Kramers-Slater Model for the Velocity of Chemical Reactions are discussed based on Smoluchowski and Fokker-Plank equations with various properties of Brownian motion and including 1-, 2-, 3-, and multi- dimensional models with applications in Neuroscience.
基金supported by the National Natural Science Foundation of China(Nos.11171193 and11371229)the Natural Science Foundation of Shandong Province(No.ZR2014AM033)the Science and Technology Development Project of Shandong Province(No.2012GGB01198)
文摘An implicit finite difference method is developed for a one-dimensional frac- tional percolation equation (FPE) with the Dirichlet and fractional boundary conditions. The stability and convergence are discussed for two special cases, i.e., a continued seep- age flow with a monotone percolation coefficient and a seepage flow with the fractional Neumann boundary condition. The accuracy and efficiency of the method are checked with two numerical examples.
文摘The phenomenon of stochastic bifurcation driven by the correlated non-Gaussian colored noise and the Gaussian white noise is investigated by the qualitative changes of steady states with the most probable phase portraits.To arrive at the Markovian approximation of the original non-Markovian stochastic process and derive the general approximate Fokker-Planck equation(FPE),we deal with the non-Gaussian colored noise and then adopt the unified colored noise approximation(UCNA).Subsequently,the theoretical equation concerning the most probable steady states is obtained by the maximum of the stationary probability density function(SPDF).The parameter of the uncorrelated additive noise intensity does enter the governing equation as a non-Markovian effect,which is in contrast to that of the uncorrelated Gaussian white noise case,where the parameter is absent from the governing equation,i.e.,the most probable steady states are mainly controlled by the uncorrelated multiplicative noise.Additionally,in comparison with the deterministic counterpart,some peculiar bifurcation behaviors with regard to the most probable steady states induced by the correlation time of non-Gaussian colored noise,the noise intensity,and the non-Gaussian noise deviation parameter are discussed.Moreover,the symmetry of the stochastic bifurcation diagrams is destroyed when the correlation between noises is concerned.Furthermore,the feasibility and accuracy of the analytical predictions are verified compared with those of the Monte Carlo(MC)simulations of the original system.
文摘In this work, we report on a closed-form formulation for the build-up factor and absorbed energy, in one and two di- mensional Cartesian geometry for photons and electrons, in the Compton energy range. For the one-dimensional case we use the LTSN method, assuming the Klein-Nishina scattering kernel for the determination of the angular radiation intensity for photons. We apply the two-dimensional LTSN nodal solution for the averaged angular radiation evaluation for the two-dimensional case, using the Klein-Nishina kernel for photons and the Compton kernel for electrons. From the angular radiation intensity we construct a closed-form solution for the build-up factor and evaluate the absorbed energy. We present numerical simulations and comparisons against results from the literature.
文摘While the signal field + ASE noise pass through a span of transmission fiber, a dispersion compensation grating and a fiber amplifier(with the generation of ASE noise), the nonlinear Fokker-Plank equations, describing the probability transforms of the field, are established and solved. Based on these statistical theories, the probability distributions of the signal + ASE noise field through 50km NZDSF, a dispersion compensation grating and a fiber amplifier link, are obtained. The dispersion and nonlinear effects in transmission fiber induce frequency offsets in the probability distribution of field and they cannot be dissipated by dispersion compensation. The generation of ASE noise in the amplifier will accelerate this frequency offset.
基金financially supported by the National Natural Science Foundation of China (Nos.11704333 and 20904047)the Natural Science Foundation of Zhejiang Province (Nos.LY17A040001 and LY19F030004)。
文摘The polymer translocation through a nanopore from a donor space(or named cis side) to a receiver space(trans side) in the chaperone-induced crowded environment has attracted increasing attention in recent years due to its significance in biological systems and technological applications. In this work, we mainly focus on the effects of chaperone concentration and chaperone-polymer interaction on the polymer translocation. By assuming the polymer translocation to be a quasi-equilibrium process, the free energy F of the polymer can be estimated by Rosenbluth-Rosenbluth method and then the translocation time τ can be calculated by Fokker-Plank equation based on the obtained free energy landscape. Our calculation results show that the translocation time can be controlled by independently tuning the chaperone concentration and chaperone-polymer interaction at the cis side or the trans side. There exists a critical chaperone-polymer attraction ε~*=-0.2 at which the volume exclusion and interaction effects of the chaperone can balance each other. Additionally, we also find that at large chaperone-polymer attraction, the translocation time is mainly governed by the diffusion coefficient of the polymer.
文摘We present a formula approximating the mean escape time(MST)of a particle from a tilted multi-periodic potential well.The potential function consists of a weighted sum of a finite number of component functions,each of which is periodic.For this particular case,the least period of the potential function is a common period amongst all of its component functions.An approximation of the MST for the potential function is derived,and this approximation takes the form of a product of the MSTs for each of the individual periodic component functions.Our first example illustrates the computational advantages of using the approximation for model validation and parameter tuning in the context of the biological application of DNA transcription.We also use this formula to approximate the MST for an arbitrary tilted periodic potential by the product of MSTs of a finite number of its Fourier modes.Two examples using truncated Fourier series are presented and analyzed.