In the present study, a gross quality control (QC) procedure is proposed for the Global Navigation Satellite System Occultation Sounder (GNOS) Global Positioning System radio occultation (GPS RO) refractivity data to ...In the present study, a gross quality control (QC) procedure is proposed for the Global Navigation Satellite System Occultation Sounder (GNOS) Global Positioning System radio occultation (GPS RO) refractivity data to remove abnormal data before they are assimilated. It consists of a climate extreme check removing data outside the range of the Constellation Observing System for Meteorology, Ionosphere and Climate (COSMIC) climate maxima and minima over approximately five years, and a vertical gradient check that rejects profiles containing super-refractions. These two QC steps were applied sequentially to identify outliers in GNOS GPS RO refractivity data during boreal winter 2013/2014.All of the abnormal refractivity profiles and the outliers at each level of the GNOS GPS RO observations were effectively removed by the proposed QC procedure. The post-QC GNOS GPS RO refractivity observations were then assimilated in the Global/Regional Analysis and PrEdiction System (GRAPES) using the three-dimensional variational(3D-Var) system. The impacts of the GNOS refractivity observation on GRAPES analysis and forecasting were evaluated and analyzed using an observation system experiment run over one whole winter season of 2013/2014. The experiment results demonstrated a positive impact of GNOS GPS RO data on analysis and forecast quality. The root mean squared error of GRAPES analysis temperature was reduced by 1%in the Southern Hemisphere (SH) extratropics and in the tropics, and the anomaly correlation scores of the forecasted 500-hPa geopotential height over the SH increased significantly during days 1 to 5. Overall, the benefits of using GNOS GPS RO data are significant in the SH and tropics.展开更多
The firmness of table grape berries is a crucial quality parameter. Despite extensive research on postharvest fruit softening, its precise molecular mechanisms remain elusive. To enhance our comprehension of the under...The firmness of table grape berries is a crucial quality parameter. Despite extensive research on postharvest fruit softening, its precise molecular mechanisms remain elusive. To enhance our comprehension of the underlying molecular factors, we initially identified differentially expressed genes(DEGs) by comparing the transcriptomes of folic acid(FA)-treated and water-treated(CK) berries at different time points. We then analyzed the sequences to detect alternatively spliced(AS) genes associated with postharvest softening. A total of 2,559 DEGs were identified and categorized into four subclusters based on their expression patterns, with subcluster-4 genes exhibiting higher expression in the CK group compared with the FA treatment group. There were 1,045 AS-associated genes specific to FA-treated berries and 1,042 in the CK-treated berries, respectively. Gene Ontology(GO) annotation indicated that the AS-associated genes in CK-treated berries were predominantly enriched in cell wall metabolic processes,particularly cell wall degradation processes. Through a comparison between treatment-associated AS genes and subcluster-4 DEGs, we identified eight genes, including Pectinesterase 2(VvPE2, Vitvi15g00704), which encodes a cell wall-degrading enzyme and was predicted to undergo an A3SS event. The reverse transcription polymerase chain reaction further confirmed the presence of a truncated transcript variant of VvPE2 in the FA-treated berries.Our study provides a comprehensive analysis of AS events in postharvest grape berries using transcriptome sequencing and underscores the pivotal role of VvPE2 during the postharvest storage of grape berries.展开更多
A Single Column Model(SCM) for Global and Regional Atmospheric Prediction Enhanced System (GRAPES) is constructed for the purpose of evaluating physical process parameterizations.Two observational datasets including W...A Single Column Model(SCM) for Global and Regional Atmospheric Prediction Enhanced System (GRAPES) is constructed for the purpose of evaluating physical process parameterizations.Two observational datasets including Wangara and the third Global Energy and Water Cycle Experiment Atmospheric Boundary Layer Study(GABLS-3) SCM field observations have been applied to evaluate this SCM.By these two numerical experiments,the GRAPESSCM is verified to be correctly constructed.Furthermore, the interaction between the land surface process and atmospheric boundary layer(ABL) is discussed through the second experiment.It is found that CASE3(CoLM land surface scheme coupled with ABL scheme) simulates less sensible heat fluxes and smaller surface temperature which corresponds with its lower potential temperature at the bottom of the ABL.Moreover,CASE3 simulates turbulence that is weaker during the daytime and stronger during nighttime,corresponding with its wind speed at 200 m which is bigger during daytime and smaller during nighttime.However,they are generally opposite in CASE2(SLAB coupled with ABL).The initial profile of the water vapor mixing ratio is artificially increased by the experiment setup which results in the simulated water vapor mixing becoming wetter than actually observed.CASE1 (observed surface temperature taken as lower thermal forcing) and CASE2 have no soil moisture prediction and simulate a similar water vapor mixing ratio,while CASE3 has a soil moisture prediction and simulates wetter.It is also shown that the time step may affect the stabilization of the ABL when the vertical levels of the SCM are fixed.展开更多
The global three-dimensional variational(3D-Var)data assimilation is implemented on a new quasi-uniform overset(Yin-Yang)grid on sphere.As a quasi-uniform spherical grid,it covers the sphere by overlapping two perpend...The global three-dimensional variational(3D-Var)data assimilation is implemented on a new quasi-uniform overset(Yin-Yang)grid on sphere.As a quasi-uniform spherical grid,it covers the sphere by overlapping two perpendicularly oriented grid components which is nothing but low latitude region of the usual latitude-longitude grid.Based on this characteristic of the Yin-Yang grid,it enables us to implement the regional 3D-Var system efficiently and accurately on the Yin or Yang component grid,respectively.The global analysis could update directly from the regional analysis since they have the same configurations like the precondition of eigenvalue decomposition for vertical direction,recursive filtering for horizontal direction,minimization method and observation operator and so on.However,the balance equation and vector wind are needed to be paid more attention on the Yin grid analysis due to its coordinate transformation.How to spread the observation information near the boundary of Yin and Yang grid is a key to the 3D-Var analysis.Extending double the horizontal correlation length distance in the overset boundary of Yin and Yang grid has successfully solved the problem.The results show that the analysis on the Yin-Yang grid is reasonable and similar to the result on the latitude-longitude(LAT-LON)grid.This paper provides a promising strategy for the development of a 3D-Var global system for overset grids.展开更多
This paper proposes a new method for data assimilation of the surface radial current observed by High Frequency ground wave radar and optimization of the bottom friction coefficient.In this method,the shallow water wa...This paper proposes a new method for data assimilation of the surface radial current observed by High Frequency ground wave radar and optimization of the bottom friction coefficient.In this method,the shallow water wave equation is introduced into the cost function of the multigrid three-dimensional variation data assimilation method as the weak constraint term,the surface current and the bottom friction coefficient are defined as the analytical variables,and the high spatiotemporal resolution surface radial flow observed by the high-frequency ground wave radar is used to optimize the surface current and bottom friction coefficient.This method can effectively consider the spatiotemporal correlation of radar data and extract multiscale information from surface radial flow data from long waves to short waves.Introducing the shallow water wave equation into the cost function as a weak constraint condition can adjust both the momentum and mass fields simultaneously to obtain more reasonable analysis information.The optimized bottom friction coefficient is introduced into the regional ocean numerical model to carry out numerical experiments.The test results show that the bottom friction coefficient obtained by this method can effectively improve the accuracy of the numerical simulation of sea surface height in the offshore area and reduce the simulation error.展开更多
基金National Key R&D Program of China(2018YFC1506205,2018YFC1506702)。
文摘In the present study, a gross quality control (QC) procedure is proposed for the Global Navigation Satellite System Occultation Sounder (GNOS) Global Positioning System radio occultation (GPS RO) refractivity data to remove abnormal data before they are assimilated. It consists of a climate extreme check removing data outside the range of the Constellation Observing System for Meteorology, Ionosphere and Climate (COSMIC) climate maxima and minima over approximately five years, and a vertical gradient check that rejects profiles containing super-refractions. These two QC steps were applied sequentially to identify outliers in GNOS GPS RO refractivity data during boreal winter 2013/2014.All of the abnormal refractivity profiles and the outliers at each level of the GNOS GPS RO observations were effectively removed by the proposed QC procedure. The post-QC GNOS GPS RO refractivity observations were then assimilated in the Global/Regional Analysis and PrEdiction System (GRAPES) using the three-dimensional variational(3D-Var) system. The impacts of the GNOS refractivity observation on GRAPES analysis and forecasting were evaluated and analyzed using an observation system experiment run over one whole winter season of 2013/2014. The experiment results demonstrated a positive impact of GNOS GPS RO data on analysis and forecast quality. The root mean squared error of GRAPES analysis temperature was reduced by 1%in the Southern Hemisphere (SH) extratropics and in the tropics, and the anomaly correlation scores of the forecasted 500-hPa geopotential height over the SH increased significantly during days 1 to 5. Overall, the benefits of using GNOS GPS RO data are significant in the SH and tropics.
基金financially supported by the National Natural Science Foundation of China(32202560 and 32302470)the Program for Innovative Research Team(in Science and Technology)in University of Henan Province+6 种基金China(21IRTSTHN021)the Natural Science Foundation of HenanChina(232300421112)the Program for Science&Technology Innovation Talents in Universities of Henan ProvinceChina(21HASTIT035)the PhD Research Startup Foundation of Henan University of Science and TechnologyChina(13480068 and 13480067)。
文摘The firmness of table grape berries is a crucial quality parameter. Despite extensive research on postharvest fruit softening, its precise molecular mechanisms remain elusive. To enhance our comprehension of the underlying molecular factors, we initially identified differentially expressed genes(DEGs) by comparing the transcriptomes of folic acid(FA)-treated and water-treated(CK) berries at different time points. We then analyzed the sequences to detect alternatively spliced(AS) genes associated with postharvest softening. A total of 2,559 DEGs were identified and categorized into four subclusters based on their expression patterns, with subcluster-4 genes exhibiting higher expression in the CK group compared with the FA treatment group. There were 1,045 AS-associated genes specific to FA-treated berries and 1,042 in the CK-treated berries, respectively. Gene Ontology(GO) annotation indicated that the AS-associated genes in CK-treated berries were predominantly enriched in cell wall metabolic processes,particularly cell wall degradation processes. Through a comparison between treatment-associated AS genes and subcluster-4 DEGs, we identified eight genes, including Pectinesterase 2(VvPE2, Vitvi15g00704), which encodes a cell wall-degrading enzyme and was predicted to undergo an A3SS event. The reverse transcription polymerase chain reaction further confirmed the presence of a truncated transcript variant of VvPE2 in the FA-treated berries.Our study provides a comprehensive analysis of AS events in postharvest grape berries using transcriptome sequencing and underscores the pivotal role of VvPE2 during the postharvest storage of grape berries.
基金supported by the National Key Technologies Research and Development Program(Grant No.2006BAC02B02)Key International S&T Cooperation Projects(Grant No. 2008DFA22180)European Commission(Call FP7ENV -2007-1 Grant nr.212921) as part of the CEOPAEGIS project(http://www.ceop-aegis.org) coordinated by the University of Strasbourg.
文摘A Single Column Model(SCM) for Global and Regional Atmospheric Prediction Enhanced System (GRAPES) is constructed for the purpose of evaluating physical process parameterizations.Two observational datasets including Wangara and the third Global Energy and Water Cycle Experiment Atmospheric Boundary Layer Study(GABLS-3) SCM field observations have been applied to evaluate this SCM.By these two numerical experiments,the GRAPESSCM is verified to be correctly constructed.Furthermore, the interaction between the land surface process and atmospheric boundary layer(ABL) is discussed through the second experiment.It is found that CASE3(CoLM land surface scheme coupled with ABL scheme) simulates less sensible heat fluxes and smaller surface temperature which corresponds with its lower potential temperature at the bottom of the ABL.Moreover,CASE3 simulates turbulence that is weaker during the daytime and stronger during nighttime,corresponding with its wind speed at 200 m which is bigger during daytime and smaller during nighttime.However,they are generally opposite in CASE2(SLAB coupled with ABL).The initial profile of the water vapor mixing ratio is artificially increased by the experiment setup which results in the simulated water vapor mixing becoming wetter than actually observed.CASE1 (observed surface temperature taken as lower thermal forcing) and CASE2 have no soil moisture prediction and simulate a similar water vapor mixing ratio,while CASE3 has a soil moisture prediction and simulates wetter.It is also shown that the time step may affect the stabilization of the ABL when the vertical levels of the SCM are fixed.
基金National Key R&D Program of China(2017YFC1501901,2017YFA0603901)。
文摘The global three-dimensional variational(3D-Var)data assimilation is implemented on a new quasi-uniform overset(Yin-Yang)grid on sphere.As a quasi-uniform spherical grid,it covers the sphere by overlapping two perpendicularly oriented grid components which is nothing but low latitude region of the usual latitude-longitude grid.Based on this characteristic of the Yin-Yang grid,it enables us to implement the regional 3D-Var system efficiently and accurately on the Yin or Yang component grid,respectively.The global analysis could update directly from the regional analysis since they have the same configurations like the precondition of eigenvalue decomposition for vertical direction,recursive filtering for horizontal direction,minimization method and observation operator and so on.However,the balance equation and vector wind are needed to be paid more attention on the Yin grid analysis due to its coordinate transformation.How to spread the observation information near the boundary of Yin and Yang grid is a key to the 3D-Var analysis.Extending double the horizontal correlation length distance in the overset boundary of Yin and Yang grid has successfully solved the problem.The results show that the analysis on the Yin-Yang grid is reasonable and similar to the result on the latitude-longitude(LAT-LON)grid.This paper provides a promising strategy for the development of a 3D-Var global system for overset grids.
基金supported by the National Natural Science Foundation of China (Nos. 41506039, 41776004, 41775100 and 41606039)the National Key Research and Development Program of China (No. 2016YFC1401800)+1 种基金the Fundamental Research Funds for the Central Universities (No. 2016B12514)the National Programme on Global Change and Air-Sea Interaction of China (No. GASI-IPO VAI-04)
文摘This paper proposes a new method for data assimilation of the surface radial current observed by High Frequency ground wave radar and optimization of the bottom friction coefficient.In this method,the shallow water wave equation is introduced into the cost function of the multigrid three-dimensional variation data assimilation method as the weak constraint term,the surface current and the bottom friction coefficient are defined as the analytical variables,and the high spatiotemporal resolution surface radial flow observed by the high-frequency ground wave radar is used to optimize the surface current and bottom friction coefficient.This method can effectively consider the spatiotemporal correlation of radar data and extract multiscale information from surface radial flow data from long waves to short waves.Introducing the shallow water wave equation into the cost function as a weak constraint condition can adjust both the momentum and mass fields simultaneously to obtain more reasonable analysis information.The optimized bottom friction coefficient is introduced into the regional ocean numerical model to carry out numerical experiments.The test results show that the bottom friction coefficient obtained by this method can effectively improve the accuracy of the numerical simulation of sea surface height in the offshore area and reduce the simulation error.
