With introduction of a diisopropyloxy phosphoryl group into the N terminal of amino acids, it was found that proton affinity (PA) of amino acid was enhanced in mass spectrometry. Density functional theory calculation...With introduction of a diisopropyloxy phosphoryl group into the N terminal of amino acids, it was found that proton affinity (PA) of amino acid was enhanced in mass spectrometry. Density functional theory calculations showed that the energy for protonation of DIPP-amino acid is lower than that of amino acid, which means PA of DIPP-AA is higher than that of corresponding amino acid. These results, coincident with our empirical results, offer a useful interpretation of experimental observations.展开更多
Relying upon the basic tenets of scientific modeling, an ansatz for the evaluation of proton affinity of mole-cules are evolved in terms of a four component model. The components of the model chosen are global de-scri...Relying upon the basic tenets of scientific modeling, an ansatz for the evaluation of proton affinity of mole-cules are evolved in terms of a four component model. The components of the model chosen are global de-scriptors like ionization energies, global softness, electronegativity and electrophilicity index. These akin quantum mechanical descriptors of atoms and molecules are linked with the charge rearrangement and polarization that occur during the physico-chemical process of protonation of molecules. The suggested ansatz is invoked to compute the protonation energy of as many as 43 compounds of diverse physico-chemical nature viz, hydrocarbons, alcohols, carbonyls, carboxylic acids, esters, aliphatic amines and aromatic amines. A detailed comparative study of theoretically evaluated protonation energies of the above mentioned molecules vis-à-vis their corresponding experimental counterparts reveals that there is a close agreement between the theory and experiment. Thus the results strongly suggest that the proposed modeling and the ansatz for computing PA, the proton affinity, of molecules for studying the physico-chemical process of protonation may be valid proposition.展开更多
In this work, we have focused our investigations on the protonation sites predilection in the benzimidazolyl- chalcones (BZC) derivatives. Particularly, we are interested in the study of geometrical and energetical pa...In this work, we have focused our investigations on the protonation sites predilection in the benzimidazolyl- chalcones (BZC) derivatives. Particularly, we are interested in the study of geometrical and energetical parameters. BZC are well known for their particularly nematicidal activity. Ten (10) BZC derivatives coded BZC-1 to BZC-10, with various larvicidal concentrations, have been selected for this work. They all are different one from another by the phenyl ring which is substituted by electron modulators such as alkyl, hydroxyl, alkoxy, aminoalkyl, halogen and nitro or replaced by the furan. Quantum chemical methods, namely HF/6-311 + G(d,p) and MPW1PW91/6- 311 + G(d,p) theory levels have been used to determine the geometrical and energetical parameters by the protonation on each heteroatom of the BZC derivative. An accuracy results with relatively less time consuming has been obtained using Hartree-Fock (HF) and Density Functional Theory methods (DFT/MPW1PW91). The calculations results allow identifying the sp<sup>2</sup> nitrogen as the preferential site of protonation in BZC derivative compounds.展开更多
To investigate whether the proton-accepting ability of imidazole in Cu,Zn-superoxide dismutase （SOD） was possibly modulated by Zn（Ⅱ） or not, the proton affinity （Ap） of N^3 in imidazole group was calculated by ...To investigate whether the proton-accepting ability of imidazole in Cu,Zn-superoxide dismutase （SOD） was possibly modulated by Zn（Ⅱ） or not, the proton affinity （Ap） of N^3 in imidazole group was calculated by density functional theory （DFT） with B3LYP functional. It was found that Zn（Ⅱ） attenuates the Ap, because of its electron-withdrawing effect, while the three ligands connected with Zn（Ⅱ） （residues of two His and one Asp） exert an opposite effect, owing to their electron-donating ability. This finding suggested that the three ligands should play a role in the normal function of Cu,Zn-SOD and should be taken into consideration in the future study.展开更多
In this work, the change of gas-phase proton affinity of alkyl-alanine through the phosphorylation reaction was studied by the electrospray ionization mass spectrometry with kinetic method. It was proved that the phos...In this work, the change of gas-phase proton affinity of alkyl-alanine through the phosphorylation reaction was studied by the electrospray ionization mass spectrometry with kinetic method. It was proved that the phosphorylation could increase the proton affinity of small peptide. A proposal that proton affinity increase might be responsible for the sensitivity improvement of small peptide in mass spectrometry has been provided.展开更多
Through the study on relation between the gas phase basicity of aliphatic alcohol,ether and amine and their four kinds of electron effects:inductive effect,conjugative effect,field effect and polarizability effect,the...Through the study on relation between the gas phase basicity of aliphatic alcohol,ether and amine and their four kinds of electron effects:inductive effect,conjugative effect,field effect and polarizability effect,the model of gas phase basicity for aliphatic alcohol,ether and amine was described as following:PA(kJ/mol)=2535.1431+316.4274∑I+523.9595PEI-802.6512X_i-544.5804Q_x-9328.6803∑I/PEI+5048.4806∑I/X_i-1070.5125 PEI/X_i.The result of regression analysis showed that the above equation is a good expression for the varying rule of the gas phase basicity of aliphatic alcohol,ehter,and amine.It can provide a relatively reliable model to calculate and predict accurately gas phase basicity for aliphatic alcohol,ether and amine.展开更多
基金the National Natural Science Foundation of China (No. 20175026) the Ministry of Science and Technology of China the Education Ministry of China and Tsinghua University for financial support.
文摘With introduction of a diisopropyloxy phosphoryl group into the N terminal of amino acids, it was found that proton affinity (PA) of amino acid was enhanced in mass spectrometry. Density functional theory calculations showed that the energy for protonation of DIPP-amino acid is lower than that of amino acid, which means PA of DIPP-AA is higher than that of corresponding amino acid. These results, coincident with our empirical results, offer a useful interpretation of experimental observations.
文摘Relying upon the basic tenets of scientific modeling, an ansatz for the evaluation of proton affinity of mole-cules are evolved in terms of a four component model. The components of the model chosen are global de-scriptors like ionization energies, global softness, electronegativity and electrophilicity index. These akin quantum mechanical descriptors of atoms and molecules are linked with the charge rearrangement and polarization that occur during the physico-chemical process of protonation of molecules. The suggested ansatz is invoked to compute the protonation energy of as many as 43 compounds of diverse physico-chemical nature viz, hydrocarbons, alcohols, carbonyls, carboxylic acids, esters, aliphatic amines and aromatic amines. A detailed comparative study of theoretically evaluated protonation energies of the above mentioned molecules vis-à-vis their corresponding experimental counterparts reveals that there is a close agreement between the theory and experiment. Thus the results strongly suggest that the proposed modeling and the ansatz for computing PA, the proton affinity, of molecules for studying the physico-chemical process of protonation may be valid proposition.
文摘In this work, we have focused our investigations on the protonation sites predilection in the benzimidazolyl- chalcones (BZC) derivatives. Particularly, we are interested in the study of geometrical and energetical parameters. BZC are well known for their particularly nematicidal activity. Ten (10) BZC derivatives coded BZC-1 to BZC-10, with various larvicidal concentrations, have been selected for this work. They all are different one from another by the phenyl ring which is substituted by electron modulators such as alkyl, hydroxyl, alkoxy, aminoalkyl, halogen and nitro or replaced by the furan. Quantum chemical methods, namely HF/6-311 + G(d,p) and MPW1PW91/6- 311 + G(d,p) theory levels have been used to determine the geometrical and energetical parameters by the protonation on each heteroatom of the BZC derivative. An accuracy results with relatively less time consuming has been obtained using Hartree-Fock (HF) and Density Functional Theory methods (DFT/MPW1PW91). The calculations results allow identifying the sp<sup>2</sup> nitrogen as the preferential site of protonation in BZC derivative compounds.
基金Project supported by the National Basic Research Program of China （No.2003CB 114400） and the National Natural Science Foundation of China （Nos. 30100035 and 30570383）.
文摘To investigate whether the proton-accepting ability of imidazole in Cu,Zn-superoxide dismutase （SOD） was possibly modulated by Zn（Ⅱ） or not, the proton affinity （Ap） of N^3 in imidazole group was calculated by density functional theory （DFT） with B3LYP functional. It was found that Zn（Ⅱ） attenuates the Ap, because of its electron-withdrawing effect, while the three ligands connected with Zn（Ⅱ） （residues of two His and one Asp） exert an opposite effect, owing to their electron-donating ability. This finding suggested that the three ligands should play a role in the normal function of Cu,Zn-SOD and should be taken into consideration in the future study.
文摘In this work, the change of gas-phase proton affinity of alkyl-alanine through the phosphorylation reaction was studied by the electrospray ionization mass spectrometry with kinetic method. It was proved that the phosphorylation could increase the proton affinity of small peptide. A proposal that proton affinity increase might be responsible for the sensitivity improvement of small peptide in mass spectrometry has been provided.
文摘Through the study on relation between the gas phase basicity of aliphatic alcohol,ether and amine and their four kinds of electron effects:inductive effect,conjugative effect,field effect and polarizability effect,the model of gas phase basicity for aliphatic alcohol,ether and amine was described as following:PA(kJ/mol)=2535.1431+316.4274∑I+523.9595PEI-802.6512X_i-544.5804Q_x-9328.6803∑I/PEI+5048.4806∑I/X_i-1070.5125 PEI/X_i.The result of regression analysis showed that the above equation is a good expression for the varying rule of the gas phase basicity of aliphatic alcohol,ehter,and amine.It can provide a relatively reliable model to calculate and predict accurately gas phase basicity for aliphatic alcohol,ether and amine.
