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Genotype × environmental interactions for analyzing adaptability and stability in different clones of Dalbergia sissoo Roxb.
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作者 A.Kumar A.Bhatt +2 位作者 S.Ravichandran V.Kumar S.Dobhal 《Journal of Forestry Research》 CAS CSCD 2012年第1期65-74,共10页
In total 36 superior clones of Dalbergia sissoo Roxb., screened from 300 selections conducted in natural and growing range of India and Nepal, were multiplied using single nodal cuttings and estab- lished to evaluate ... In total 36 superior clones of Dalbergia sissoo Roxb., screened from 300 selections conducted in natural and growing range of India and Nepal, were multiplied using single nodal cuttings and estab- lished to evaluate genotypexenvironmental interactions for adaptability and stability at the age of 30 months in three geographical locations in the state of Punjab, India. Clone 124 had maximum adaptability and stability (bi = 1.04) to perform exceedingly well over the locations. Clones 36 and 1 were stable with mean regression coefficient of 0.84 and 1.22, respectively. Nonetheless, clone 4 1 performed exceedingly well for all the characters to attain maximum population mean, and the perform- ance varied substantially across the locations. Therefore, clone 41 was considered as productive but non-adaptive clone. Though some of the clones were sensitive to sites, 14 clones for height, 16 for collar diameter, 12 for DBH and 7 for volume were relatively un-sensitive with higher regression coefficient. Nonetheless, clone 124 was the most Stable with average bi value of 1.04 and productive, which could play an important role in future breeding and commercial deployment of stable and produc- tive planting stock of Dalbergia sissoo. 展开更多
关键词 Dalbergia sissoo Roxb. gxe interactions stability parame-ters ADAPTABILITY superior genotypes
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Influence of DAP1 Genotype and Psychosocial Factors on Posttraumatic Stress Disorder in Thai Tsunami Survivors: A GxE Approach
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作者 Nuntika Thavichachart Prathan Rutchatajumroon +13 位作者 Taisei Mushiroda Anchalee Prasansuklab Sookjaroen Tangwongchai Puangsoi Worakul Buranee Kanchanatawan Siriluck Suppapitiporn Atapol Sughondhabirom Chutima Roomruangwong Ongart Charoensook Wasun Chantratita Atsushi Takahashi Michiaki Kubo Naoyuki Kamatani Yusuke Nakamura 《Open Journal of Genetics》 2019年第3期65-75,共11页
Background: Posttraumatic Stress Disorder (PTSD) is a psychiatric disorder found in individuals afflicted by a traumatic event including the natural disaster. “Tsunami” occurred in Andaman coast of Thailand on Decem... Background: Posttraumatic Stress Disorder (PTSD) is a psychiatric disorder found in individuals afflicted by a traumatic event including the natural disaster. “Tsunami” occurred in Andaman coast of Thailand on December 26, 2004, in which 33.6% of survivors were diagnosed as PTSD. This study aimed to explore the single nucleotide polymorphism (SNP). rs267943 genotype is located on chromosome 5 in the intron of the death-associated protein 1 (DAP1) gene and psychosocial factors for PTSD. Methods: Participants (N = 1970) were recruited from volunteers who have complete data both of DAP1 gene and psychosocial factor. Results: Using a binary logistic regression model, significant gene-environment interactions were found for the single nucleotide polymorphism (SNP) rs267943 and psychosocial factors including depression (adj. OR = 6.0, 95% CI = 4.29 - 8.39), neurotic personality (adj. OR = 2.73, 95% CI = 2.18 - 3.42), planning (adj. OR = 1.52, 95% CI = 1.20 - 1.93), use of emotional support (adj. OR = 1.32, 95% CI = 1.21 - 1.94) with statistical significant p Conclusion: This study demonstrated that GxE studies can be utilized to shed light on the origins of PTSD. 展开更多
关键词 Death-Associated Protein 1 GENE (DAP1) gene-by-environment interaction (gxe) Genetype POSTTRAUMATIC Stress Disorder (PTSD) PSYCHOSOCIAL Factors TSUNAMI
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水稻柱头外露率QTLs定位及其互作分析 被引量:13
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作者 沈圣泉 庄杰云 +2 位作者 包劲松 舒庆尧 夏英武 《生物数学学报》 CSCD 北大核心 2006年第4期610-614,共5页
以协青早B/密阳46所构建的RIL群体及其相应分子遗传图谱,设置海南和杭州两地遗传试验,应用基于混合线性模型检测QTL主效应、上位性效应和G×E互作效应的遗传分析方法,对水稻柱头外露率(%)进行QTL联合分析.结果表明,该性状明显表现... 以协青早B/密阳46所构建的RIL群体及其相应分子遗传图谱,设置海南和杭州两地遗传试验,应用基于混合线性模型检测QTL主效应、上位性效应和G×E互作效应的遗传分析方法,对水稻柱头外露率(%)进行QTL联合分析.结果表明,该性状明显表现出海南较高(21.83%)而杭州较低(8.35%)的趋势.试验检测到1个主效应QTL(qSE6-1),其LOD值高达28.16,对性状表型的贡献率为14.14%,增效等位基因来自于母本,加性效应为5.10%,不存在显著的GE互作.试验还检测到3对显著的加性×加性双基因互作,上位性互作性效应和贡献率相对较小,且与环境不存在显著的互作. 展开更多
关键词 水稻 RIL群体 QTL定位 上位性效应 G×E互作效应 柱头外露率
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水稻幼苗对多浓度Fe^(2+)胁迫的QTL联合检测 被引量:5
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作者 叶红霞 李梅 +1 位作者 庄杰云 沈圣泉 《分子植物育种》 CAS CSCD 2007年第1期105-109,共5页
用珍汕97B/密阳46的RIL作图群体,以基本营养液培养为对照(CK),设2种Fe2+(160mg/L和240mg/L)作为胁迫处理,以处理20d的幼苗相对苗高(%)(处理苗高/对照苗高×100%)作为幼苗耐Fe2+胁迫程度的评价指标,进行2个环境的QTL联合检测分析。... 用珍汕97B/密阳46的RIL作图群体,以基本营养液培养为对照(CK),设2种Fe2+(160mg/L和240mg/L)作为胁迫处理,以处理20d的幼苗相对苗高(%)(处理苗高/对照苗高×100%)作为幼苗耐Fe2+胁迫程度的评价指标,进行2个环境的QTL联合检测分析。结果表明,RIL群体株系间对Fe2+胁迫反应差异较大,明显出现超亲分离。共检测到4个耐Fe2+胁迫的主效QTL,即qTFS-1-1、qTFS-3、qTFS-6和qTFS-9,分别位于第1、3、6和9染色体上,可解释14.96%的表型变异,它们与Fe2+胁迫浓度并无显著的G×E互作,表明这4个耐性基因在不同浓度Fe2+胁迫处理下,均可稳定表达。试验还检测到3对耐Fe2+胁迫的加性×加性上位性互作,共可解释7.16%的表型变异,涉及第1、2、7、9、12等5条染色体,该3对上位性互作与Fe2+不同浓度胁迫处理也无显著G×E互作。 展开更多
关键词 水稻 RIL群体 QTL 基因定位 上位性效应 耐Fe^2+ 胁迫
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Grain Yield and Protein Content of Brazilian Cowpea Genotypes under Diverse Ugandan Environments
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作者 Gabriel Ddamulira Carlos Antonio Fernandes Santos +2 位作者 Peter Obuo Mildred Alanyo Charles Kasozi Lwanga 《American Journal of Plant Sciences》 2015年第13期2074-2084,共11页
Twenty nine cowpea genotypes, including four Ugandan genotypes, were evaluated for grain yield, protein stability and adaptability under diverse environments in a randomized complete block design with three replicatio... Twenty nine cowpea genotypes, including four Ugandan genotypes, were evaluated for grain yield, protein stability and adaptability under diverse environments in a randomized complete block design with three replications. The analysis showed that cowpea grain yield and protein content were significantly (P < 0.01) affected by genotypes (G), environments (E), and interaction (G x E). Genotypes C2T and C2I had the highest grain yield and protein content respectively, but both were only adapted to specific environments. Genotypes C1J, C1V, C2A, C2O, and C2R were adapted to three environments with high yield which was stable. Similarly, genotypes BRS Pujante, C1J, C2Q and CIT also expressed high protein levels with high stability and wide adaptability. The study further revealed that Namulonge 2014B, Serere 2014A, Serere 2014B and Serere were the most favorable environments for obtaining high yield and protein respectively, because at these four environments, mean yield and protein were higher than the overall mean. All Brazilian genotypes had high protein levels compared to Ugandan genotypes indicating the potential of Brazilian genotypes in improving cowpea seed protein content in Uganda. 展开更多
关键词 Stability ADAPTABILITY AMMI gxe interaction
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Comparative study of QTLs for agronomic traits of rice (Oriza sativa L.) between salt stress and nonstress environment 被引量:1
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作者 龚继明 郑先武 +4 位作者 杜保兴 钱前 陈受宜 朱立煌 何平 《Science China(Life Sciences)》 SCIE CAS 2001年第1期73-82,共10页
Genotype-by-environment interactions (G′E) are commonly observedfor quantitative traits. In the present study, a doubled haploid (DH) population and its genetic linkage map were used to comparatively study QTLs in sa... Genotype-by-environment interactions (G′E) are commonly observedfor quantitative traits. In the present study, a doubled haploid (DH) population and its genetic linkage map were used to comparatively study QTLs in salt stress and nonstress environments. A total of 24 QTLs were detected for five agronomic traits, which were distributed on all the chromosomes except 9 and 11. Under the salt stress, nine (37.5%) QTLs were detected, including one for 1 000-grain weight (GW), two for heading date (HD), one for plant height (PH), two for grains per panicle (GPP), and three for effective tillers (ET), while in the nonstress environment, 17 QTLs (70.8%) were detected, including five for GW, six for HD, three for PH, two for GPP, and one for ET. Two QTLs (8.3%) were consistently detected in both environments. One was identified on chromosome 4 for HD and the other on Chr.6 for GPP. Furthermore, three regions carrying multiple QTLs were identified on chromosomes 1, 4 and 8 respectively. For example, on chromosome 8, three QTLs for HD, GW and PH, respectively were identified between RG885-GA408 in nonstress environment, but not in the stress environment. The comparative study of QTLs detected in extremely different (salt stress and nonstress) environments revealed that there existed several QTLs for important agronomic traits on chromosome 8 which were affected significantly by salt stress. 展开更多
关键词 rice (Oriza saliva L.) QTLS salt stress doubled haploid population gxe interaction.
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