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Screening of Effective Resistance Genes and Resistant Rice Parents against Rice Bacterial Blight(Xanthomonas oryzae pv. Oryzae) in Guangxi Province
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作者 何翎 高利军 +5 位作者 王忠文 邓国富 岑贞陆 颜群 张晋 高汉亮 《Plant Diseases and Pests》 CAS 2011年第4期18-20,共3页
[ Objective ] The paper was to confirm the resistance genes and resistant parents of rice against bacterial blight that could be used in Guangxi Province. [ Method] The dominant pathogenic types Ⅳ of Xanthomonas Oryz... [ Objective ] The paper was to confirm the resistance genes and resistant parents of rice against bacterial blight that could be used in Guangxi Province. [ Method] The dominant pathogenic types Ⅳ of Xanthomonas Oryzae pv. Oryzae in Guangxi were inoculated on a set of monogenic rice lines, the main hybrid rice parents in Guangxi and some important rice germplasm resources, and its resistant and susceptible conditions were investigated. [ Result ] IRBBS, IRBB7 and CBB23 were the resistant rice parents with resistance against pathogenic type IV, which contained resistance genes xa5, Xa7 and Xa23, respectively, and were identified to be the effective resistance genes against pathogenic type Ⅳ of X. Oryzae in Guangxi. [ Conclusion] The results provided basis for resistance breeding against bacterial blight. 展开更多
关键词 Rice parents bacterial blight Resistance genes China
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Breeding of near-isogenic japonica rice lines with three major genes for resistance to bacterial blight
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作者 ZHANG Qi SHI Ainong YANG Wencai WANG Chunlian Inst of Crop Breeding and Cultivation,CAAS,Beijing 100081,China 《Chinese Rice Research Newsletter》 1995年第1期6-8,共3页
From 1986 to 1993, a set of near-isogenic japonicarice Iines with three major genes Xα-3, Xα - 4,and Xα-12 for resistance to bacterial blight(Xan-thomonas oryzae pv.oryzae)were developed anddesignated as CBB3, CBB4... From 1986 to 1993, a set of near-isogenic japonicarice Iines with three major genes Xα-3, Xα - 4,and Xα-12 for resistance to bacterial blight(Xan-thomonas oryzae pv.oryzae)were developed anddesignated as CBB3, CBB4, and CBB12 respective- 展开更多
关键词 CBB Breeding of near-isogenic japonica rice lines with three major genes for resistance to bacterial blight
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Application of Functional Markers to Identify Genes for Bacterial Blight Resistance in Oryza rufipogon 被引量:3
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作者 XIA Zhi-hui HAN Fei +4 位作者 GAO Li-fen YUAN Qian-hua ZHAI Wen-xue LIU Di LUO Yue-hua 《Rice science》 SCIE 2010年第1期73-76,共4页
Field resistances of nine accessions of common wild rice (Oryza rufipogon Griff.) and one rice variety (IR24) were evaluated by using nine strains of bacterial blight pathogen (Xanthomonas oryzae pv. oryzae) fro... Field resistances of nine accessions of common wild rice (Oryza rufipogon Griff.) and one rice variety (IR24) were evaluated by using nine strains of bacterial blight pathogen (Xanthomonas oryzae pv. oryzae) from the Philippines. IR24 was highly susceptible to all the strains, and six common wild rice accessions resisted all the nine strains, with a resistance frequency of 67%. The accessions Yulin and Wanning were only susceptible to PXO280 and PXO71, respectively. The accession Gaozhou was susceptible to the three strains PXO79, PXO99 and PXO339, whereas resistant to the other six strains. It could be concluded that there is at least one resistance gene in each common wild rice accession. The functional markers of the genes xa5, xa13, Xa21 and Xa27 were used to detect the presence of these resistance genes in the nine tested wild rice accessions, and it was found that four wild rice accessions contained heterozygous xa13. Among the nine common wild rice accessions, five were homozygous for Xa27 and three homozygous for xa27, and the accession Laibin contained neither xa27 nor Xa27. In addition, there were no xa5 and Xa21 in all of these accessions. 展开更多
关键词 Oryza rufipogon bacterial blight resistance gene functional marker
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Resistance Analysis on Major Resistant Genes of Rice Bacterial Blight in Different Donors and Genetic Background
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作者 Liexian ZENG Congying WANG +6 位作者 Aqing FENG Chen SHEN Jing SU Wenjiun WANG Shengyuan WU Jianyuan YANG Xiaoyuan ZHU 《Agricultural Biotechnology》 CAS 2017年第5期11-14,65,共5页
The different donors of eight rice bacterial blight( BB) major resistant( MR) genes,Xa3,Xa4,xa5,Xa7,Xa10,Xa11,Xa14 and Xa23,were inoculated with two Chinese Xoo strains,strain IV and strain V,respectively. The strain ... The different donors of eight rice bacterial blight( BB) major resistant( MR) genes,Xa3,Xa4,xa5,Xa7,Xa10,Xa11,Xa14 and Xa23,were inoculated with two Chinese Xoo strains,strain IV and strain V,respectively. The strain IV was a predominant pathotype in south China,while the strain V was a severe virulentstrain. Two susceptible sterile lines and two susceptible inbred rice were employed to study the effect of geneticbackground on expression of resistance to BB for Xa4,xa5,Xa7 and Xa23. The application value of twodominant resistant genes Xa7 and Xa23 on hybrid rice was also evaluated. The results indicated that the resistance inheritance behaviors of most of the MR genes to the Xoo strains were similar and only a few genes show contradictory reaction in different donors,which suggests that the genetic background would produce an effect on the resistant expression of some R genes. Four resistant donors,IRBB4,IRBB5,IRBB7 and CBB23,were crossed with four susceptible cultivars,WufengA,JitianA,Jingang30 and IR24,respectively,using the resistant donors as male parent. The analysis of F1 populations revealed that the recessive resistance gene xa5 and dominant resistance gene Xa23 conformed to recessive and dominant expression model,respectively,while the other two dominant resistance genes,Xa4 and Xa7,conformed to dominant expression model only in some of F1 populations but not for others. In conclusion,expression of resistance for xa5 and Xa23 was independent of genetic background,while Xa4 and Xa7 show specific behaviors of resistance related to the receptor background. This study also suggests that Xa7 is not suitable for application in hybrid rice,for the F1 generation of its cross with two male sterile lines were highly susceptible,and Xa23( CBB23) had important value in improving BB resistance of hybridrice,as the F1 generations from its cross with 4 susceptible parents,including sterile lines and inbred rice,were all show highly resistant. 展开更多
关键词 GENETIC background RICE bacterial blight RESISTANCE genes RICE RESISTANCE
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Preliminary evaluation of resistance genes in rice against bacterial leaf blight in Guilan Province—Iran
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作者 Maryam Khoshkdaman Ali Akbar Ebadi +1 位作者 Farzad Majidi-Shilsar Somaye Dariush 《Agricultural Sciences》 2014年第2期94-98,共5页
The reactions of rice bacterial leaf blight races were identified in Guilan province—Iran on 12 near-isogenic lines and 14 pyramiding lines from International Network for Genetic Evaluation of rice (INGER) and 8 loca... The reactions of rice bacterial leaf blight races were identified in Guilan province—Iran on 12 near-isogenic lines and 14 pyramiding lines from International Network for Genetic Evaluation of rice (INGER) and 8 local and improved Iranian varieties were evaluated under natural photoperiod condition in the field. Inoculation was done at panicle initiation by clipping the sterilized scissors in the bacterial suspension to booting stage. Scoring of inoculated plants was made 21 days after inoculation. Infection levels of pyramiding lines containing two to five resistance genes, expect, IRBB53 and IRBB61 with respectively resistance gene combination, Xa5 + Xa13 and Xa4 + Xa5 + Xa7, were not so clear. Among near-isogenic lines IRBB1, IRBB2, IRBB4 and IRBB10 carrying resistance gene Xa1, Xa2, Xa4 and Xa10 were susceptible;IRBB8, IRBB11, IRBB3, IRBB5 and IRBB13 were moderately susceptible;(having resistance gene Xa8, Xa11, Xa3, Xa5 and Xa13) IRBB14, IRBB21 and IRBB7 with respectively resistance gene Xa14, Xa21 and Xa7 were moderately resistance to bacterial blight. Furthermore, most of the time gene combinations support the strategy of pyramiding appropriate resistance gene. Local varieties were more susceptible than improved varieties to leaf blight disease. Among local varieties, Tarom was the most susceptible. And also, there were no significant differences among improved varieties and all of them were moderately resistance. 展开更多
关键词 bacterial LEAF Blight Iran Isogenic LINES PYRAMIDING LINES Resistance genes RICE
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Molecular Screening of Rice Cultivated in Benin for the Identification of Xanthomonas oryzae Pv. oryzae and Bacterial Leaf Blight Resistance Genes
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作者 Chimène Nadège Mahoussi Nanoukon Koffi David Montcho Hambada +8 位作者 Antoine Abel Missihoun Kéllya Laurinzo Déguénon Bignon Meyrix Pamela Franzel Loumédjinon Bana Wêtè Déré Félicité Bio Emilienne Zinsou Réel Gael Fael Houngbélagnon Amed Sèmèvo Havivi Lamine Baba-Moussa Lambert Gustave Djédatin 《Advances in Bioscience and Biotechnology》 2023年第12期514-533,共20页
One of the most devastating diseases of rice worldwide is bacterial blight (BLB) caused by Xanthomonas oryzae pv. Oryzae (Xoo). In Benin, Xoo was first described in 2013 on wild rice Oryzae longistaminata. So far, no ... One of the most devastating diseases of rice worldwide is bacterial blight (BLB) caused by Xanthomonas oryzae pv. Oryzae (Xoo). In Benin, Xoo was first described in 2013 on wild rice Oryzae longistaminata. So far, no study has been done on Beninese Xoo strains. We do not know whether the pathogen has already passed into the rice varieties grown, or if they are exposed to other bacteria. Whereas the use of resistant varieties, carrying resistance genes, is the only highly effective and environmentally friendly way to control this disease, no information is available on these Xoo resistance genes in rice varieties grown in Benin apart from the one we recently. This study aims to identify Beninese Xoo strains, causing BLB and screen rice varieties grown in Benin for the main resistance genes. Diseased rice leaves showing typical symptoms of fire blight collected from different rice fields in the three phytogeographic areas of Benin were analyzed by PCR for Xoo-specific sequence identification. Furthermore, seventy-five collected rice accessions were screened to identify xa5, Xa7, xa13, and Xa21 resistance genes to Xoo. The results reveal that Xanthomonas oryzae was identified in two fields in Banikouara and one in Malanville. On the other hand, Sphingomonas sp. has been identified in several other rice fields in Benin. Forty-seven of seventy-five rice accessions examined (62.66%) carried Xoo resistance genes with 3 (4%) and 40 (53.33%) of xa5 and Xa21 respectively. None of the accessions had either Xa7 or xa13 resistance genes. Three accessions possess both xa5 and Xa21 genes. Isogenic lines IRBB60 and IRBB21, supposed to be a positive control, presented a Xoo sensitivity allele. These results indicate that Xoo has moved from the wild rice variety to the cultivated variety in northern Benin and varietal improvement programs must be implemented with varieties having several resistance genes for the efficient response against a possible BLB pandemic in Benin. 展开更多
关键词 bacterial Blight Xanthomonas oryzae Pv. oryzae Molecular Characterization Resistance genes
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Evaluatien of Near-lsogenic Rice Lines with 8 Genes for Bacterial Blight Resistance to Strains in China
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作者 T.W.MEW 《Chinese Rice Research Newsletter》 1990年第1期3-5,共3页
A set of near-isogenic rice lines withmonogenic resistance to bacterial blight weredeveloped by IRRI.The Cultivar IR24 wasused as the recurred parent.They wereevaluated with 6 races of Xanthomonascampestris pv.oryzae(... A set of near-isogenic rice lines withmonogenic resistance to bacterial blight weredeveloped by IRRI.The Cultivar IR24 wasused as the recurred parent.They wereevaluated with 6 races of Xanthomonascampestris pv.oryzae(Xco)in the Philip-pines at the maximum tillering and the bootingstages by ZHANG and MEW at IRRI in 1989. 展开更多
关键词 Evaluatien of Near-lsogenic Rice Lines with 8 genes for bacterial Blight Resistance to Strains in China
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Marker-Assisted Pyramiding of Genes Conferring ResistanceAgainst Bacterial Blight and Blast Diseases into Indian RiceVariety MTU1010 被引量:3
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作者 k.arunakumari c.v.durgarani +10 位作者 v.satturu k.r.sarikonda p.d.r.chittoor b.vutukuri g.s.laha a.p.k.nelli s.gattu m.jamal a.prasadbabu s.hajira r.m.sundaram 《Rice science》 SCIE CSCD 2016年第6期306-316,共11页
Two major bacterial blight (BB) resistance genes (Xa21 and xa13) and a major gene for blastresistance (Pi54) were introgressed into an Indian rice variety MTU1010 through marker-assistedbackcross breeding. Impro... Two major bacterial blight (BB) resistance genes (Xa21 and xa13) and a major gene for blastresistance (Pi54) were introgressed into an Indian rice variety MTU1010 through marker-assistedbackcross breeding. Improved Samba Mahsuri (possessing Xa21 and xa13) and NLR145 (possessingPi54) were used as donor parents. Marker-assisted backcrossing was continued till BC2 generationwherein PCR based functional markers specific for the resistance genes were used for foregroundselection and a set of parental polymorphic microsatellite markers were used for background selectionat each stage of backcrossing. Selected BC2F1 plants from both crosses, having the highest recoveriesof MTU1010 genome (90% and 92%, respectively), were intercrossed to obtain intercross F1 (ICF1) plants,which were then selfed to generate 880 ICF2 plants possessing different combinations of the BB andblast resistance genes. Among the ICF2 plants, seven triple homozygous plants (xa13xa13Xa21Xa21Pi54Pi54)with recurrent parent genome recovery ranging from 82% to 92% were identified. All the seven ICF2plants showed high resistance against the bacterial blight disease with a lesion lengths of only 0.53–2.28 cm, 1%–5% disease leaf areas and disease scoring values of ‘1’ or ‘3’. The seven ICF2 plants wereselfed to generate ICF3, which were then screened for blast resistance, and all were observed to behighly resistant to the diseases. Several ICF3 lines possessing high level of resistance against BB andblast, coupled with yield, grain quality and plant type on par with MTU1010 were identified and advanced forfurther selection and evaluation. 展开更多
关键词 gene pyramiding bacterial blight resistance blast resistance RICE marker-assistedbackcross breeding
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Changes in bacterial community and abundance of functional genes in paddy soil with cry1Ab transgenic rice 被引量:1
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作者 SONG Ya-na CHEN Zai-jie +2 位作者 WU Ming-ji LI Gang WANG Feng 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2021年第6期1674-1686,共13页
A field experiment involving cry1Ab transgenic rice(GM) and its parental non-cry1Ab rice(M) has been on-going since 2014. The diversity of the bacterial communities and the abundance of the microbial functional genes ... A field experiment involving cry1Ab transgenic rice(GM) and its parental non-cry1Ab rice(M) has been on-going since 2014. The diversity of the bacterial communities and the abundance of the microbial functional genes which drive the conversion of nitrogen in paddy soil were analyzed during the growth period of rice in the fifth year of the experiment, using 16 S rRNAbased Illumina Mi Seq and real-time PCR on the amoA, nirS and nirK genes. The results showed no differences in the alpha diversity indexes of the bacterial communities, including Chao1, Shannon and Simpson, between the fields cultivated with line GM and cultivar M at any of the growth stages of rice. However, the bacterial communities in the paddy soil with line GM were separated from those of paddy soil with cultivar M at each of the growth stages of rice, based on the unweighted Uni Frac NMDS or PCoA. In addition, the analyses of ADONIS and ANOSIM, based on the unweighted Uni Frac distance, indicated that the above separations between line GM and cultivar M were statistically significant(P<0.05) during the growth season of rice. The increases in the relative abundances of Acidobacteria or Bacteroidetes, in the paddy soils with line GM or cultivar M, respectively, led to the differences in the bacterial communities between them. At the same time, functional gene prediction based on Illumina Mi Seq data suggested that the abundance of many functional genes increased in the paddy soil with line GM at the maturity stage of rice, such as genes related to the metabolism of starch, amino acids and nitrogen. Otherwise, the copies of bacterial amo A gene, archaeal amo A gene and denitrifying bacterial nir K gene significantly increased(P<0.05 or 0.01) in the paddy soil with line GM. In summary, the release of cry1Ab transgenic rice had effects on either the composition of bacterial communities or the abundance of microbial functional genes in the paddy soil. 展开更多
关键词 cry1Ab transgenic rice bacterial community microbial functional gene Illumina MiSeq Platform real-time PCR
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Resistance Evaluation of Indica Rice Varieties with Bacterial Blight Resistance Genes Xa21 and Xa23 under Different Genetic Backgrounds
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作者 Jianghui YU Jinjiang LI +1 位作者 Lihua DENG Lushui WENG 《Plant Diseases and Pests》 CAS 2022年第1期1-8,12,共9页
[Objectives]The paper was to evaluate the resistance of indica rice varieties with bacterial blight resistance genes Xa21 and Xa23 under different genetic backgrounds.[Methods]The rice materials with bacterial blight ... [Objectives]The paper was to evaluate the resistance of indica rice varieties with bacterial blight resistance genes Xa21 and Xa23 under different genetic backgrounds.[Methods]The rice materials with bacterial blight resistance genes Xa21 or Xa23 were used as the donors,and those without the genes were used as the receptors.By back crossing,composite crossing and other methods,combined with molecular marker-assisted selection(MAS),the materials with Xa21 or Xa23 gene,and their sister lines with/without Xa21 or Xa23 gene were inoculated with 7 widely used physiological races of Xanthomonas oryzae,and the resistance of the materials to bacterial blight was analyzed.[Results]The proportions of cumulative resistance(HR,R,MR)of rice materials with resistance gene Xa21 were HNA1-4/PXO86(84.62%)>YN24(82.14%)>GD1358(73.08%)>PXO99(67.86%)>GDA2(63.33%)>FuJ(6.67%),indicating that the materials with Xa21 gene had no resistance to bacterial blight induced by strain FuJ,but for other strains,there were still 36.67%-15.38%of the materials susceptible to the disease.The cumulative resistance(HR,R,MR)of the materials with Xa23 gene was over 76%,but there were still 23.02%-15.52%of the materials that had no resistance to the 7 strains.The analysis of variation coefficient of lesion length showed that the resistance of materials with Xa21 or Xa23 genes varied among strains,or the resistance to the same strain varied among materials.Correlation analysis demonstrated that there was significant or extremely significant positive correlation between strain GDA2 or HNA1-4 and other 6 corresponding strains in the materials with Xa21 gene,and there was extremely significant positive correlation between strain YN24,GD1358 or PXO86 and other 6 corresponding strains in the materials with Xa23 gene.Selection of these strains for resistance identification could improve the efficiency of breeding.Analysis of sister lines showed that bacterial blight resistance of Xa21 or Xa23 genes was related to the donor of the materials.Correlation analysis showed that the resistance of the materials with Xa21 gene had extremely significant positive correlation with parents(R=0.5725**),and the resistance of the materials with Xa23 gene had significant positive correlation with parents(R=0.2212*).[Conclusions]The study provides the reference for molecular resistance breeding of bacterial blight. 展开更多
关键词 RICE bacterial blight Resistance analysis Resistance gene
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Nanoplastics promote the dissemination of antibiotic resistance genes and diversify their bacterial hosts in soil
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作者 Lijuan Liu Yuanze Sun +2 位作者 Shaoting Du Yanming Li Jie Wang 《Eco-Environment & Health》 2024年第1期1-10,共10页
The wide application of plastics has led to the ubiquitous presence of nanoplastics and microplastics in terrestrial environments.However,few studies have focused on the mechanism underlying the effects of plastic par... The wide application of plastics has led to the ubiquitous presence of nanoplastics and microplastics in terrestrial environments.However,few studies have focused on the mechanism underlying the effects of plastic particles on soil microbiomes and resistomes,especially the differences between nanoplastics and microplastics.This study investigated the microbiome and resistome in soil exposed to polystyrene microplastics(mPS)or nanoplastics(nPS)through 16S rRNA and shotgun metagenomic sequencing.Distinct microbial communities were observed between mPS and nPS exposure groups,and nPS exposure significantly changed the bacterial composition even at the lowest amended rate(0.01%,w/w).The abundance of antibiotic resistance genes(ARGs)in nPS exposure(1%)was 0.26 copies per cell,significantly higher than that in control(0.21 copies per cell)and mPS exposure groups(0.21 copies per cell).It was observed that nanoplastics,bacterial community,and mobile genetic elements(MGEs)directly affected the ARG abundance in nPS exposure groups,while in mPS exposure groups,only MGEs directly induced the change of ARGs.Streptomyces was the predominant host for multidrug in the control and mPS exposure,whereas the primary host was changed to Bacillus in nPS exposure.Additionally,exposure to nPS induced several bacterial hosts to exhibit possible multi-antibiotic resistance characteristics.Our results indicated that the effects of plastic particles on the soil microbial community were size-dependent,and nano-sized plastic particles exhibited more substantial impacts.Both microplastics and nanoplastics promoted ARG transfer and diversified their bacterial hosts.These findings bear implications for the regulation of plastic waste and ARGs. 展开更多
关键词 Microplastics Nanoplastics METAGENOMICS bacterial hosts Antibiotic resistance genes
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Potential effect of hepatitis C Virus non-structural protein 4B on liver carcinogenesis
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作者 Xia Chen Changping Li Zhongqiong Wang Guanghong DU 《Journal of Nanjing Medical University》 2006年第6期387-391,共5页
Objective:To investigate the effect of hepatitis C virus non-structural protein 4B(HCV NS4B) on c-Myc, P53, ras gene expression" and apoptosis in hepatic cells and study the possible role that NS4B played in the c... Objective:To investigate the effect of hepatitis C virus non-structural protein 4B(HCV NS4B) on c-Myc, P53, ras gene expression" and apoptosis in hepatic cells and study the possible role that NS4B played in the carcinogenesis of heparoma. Methods: The recombinant plasmid(PCXN2-NS4B, PCXN2-P53) and the empty, vector were transfected or co-transfected into Chang liver cells with liposome. Screening was performed with G418. Plasmid mRNA was detected by RT-PCR. The pro rein expressions of c-Myc and ras genes were analyzed by immunocytochemistry. The expressions of wild-type P53 (wtp53) gene were detected by in situ hybridization. TUNEL(flow cytometry) was used for assessing the rate of apoptosis. Results:No expression of c-Myc gene was found in PCXN2 group. The expression of c-Myc gene in NS4B group was 21.3% + 1.2%. The ex pression of ras gene in PCXN2 group was lower than that in NS4B group. Compared with PCXN2 group, the expression of P53 mRNA was not promoted or inhibited in NS4B group. But the expression of P53 mRNA in NS4B-P53 group was lower than that in P53 group. In PCXN2, NS4B, P53 and NS4B-P53 group, the rates of apoptosis were 17.02% ± 1.24%, 11.94% ± 2.24%, 25.84% ± 3.49% and 18.34% ± 1.55% respectively. Conclusion :HCV NS4B induces the expression of c-Myc and ras gene. HCV NS4B may play a role in the inhibition of cell death through P53-dependent manner. Results from this study suggested that HCV NS4B might contribute to the viral carcinogenesis. 展开更多
关键词 non-structural protein 4B tumor suppressor gene ONCOGENE APOPTOSIS
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Impacts of n-alkane concentration on soil bacterial community structure and alkane monooxygenase genes abundance during bioremediation processes 被引量:1
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作者 Yueqiao Liu Aizhong Ding +2 位作者 Yujiao Sun Xuefeng Xia Dayi Zhang 《Frontiers of Environmental Science & Engineering》 SCIE EI CSCD 2018年第5期155-167,共13页
Petroleum hydrocarbons,mainly consisting of n-alkanes and polycyclic aromatic hydrocarbons(PAHs),are considered as priority pollutants and biohazards in the environment,eventually affecting the ecosystem and human hea... Petroleum hydrocarbons,mainly consisting of n-alkanes and polycyclic aromatic hydrocarbons(PAHs),are considered as priority pollutants and biohazards in the environment,eventually affecting the ecosystem and human health.Though many previous studies have investigated the change of bacterial community and alkane degraders during the degradation of petroleum hydrocarbons,there is still lack of understanding on the impacts of soil alkane contamination level.In the present study,microcosms with different n-alkane contamination(1%,3%and 5%)were set up and our results indicated a complete alkane degradation after 30 and 50 days in 1%-and 3%-alkane treatments,respectively.In all the treatments,alkanes with medium-chain length(C_(11)-C_(14))were preferentially degraded by soil microbes,followed by C27-alkane in 3%and 5%treatments.Alkane contamination level slightly altered soil bacterial community,and the main change was the presence and abundance of dominant alkane degraders.Thermogemmatisporaceae,Gemmataceae and Thermodesulfovibrionaceae were highly related to the degradation of C_(14)-and C_(27)-alkanes in 5%treatment,but linked to alkanes with medium-chain(C11-C18)in 1%treatment and C21-alkane in 3%treatment,respectively.Additionally,we compared the abundance of three alkane-monooxygenase genes,e.g.,alk_A,alk_P and alk_R.The abundance of alk_R gene was highest in soils,and alk_P gene was more correlated with alkane degradation efficiency,especially in 5%treatment.Our results suggested that alkane contamination level showed non-negligible effects on soil bacterial communities to some extents,and particularly shaped alkane degraders and degrading genes significantly.This study provides a better understanding on the response of alkane degraders and bacterial communities to soil alkane concentrations,which affects their biodegradation process. 展开更多
关键词 Petroleum hydrocarbon contaminated site n-alkane contamination level n-alkane biodegradation Soil bacterial community Alkane degraders Alkane-monooxygenase genes
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The Structural Proteins of Bdellovibrio bacteriovorus Bacteriophage MAC-1
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作者 Rajinder S. Ranu Renee Gallegos +1 位作者 Mary Althauser Lisa Wolfe 《World Journal of Engineering and Technology》 2016年第3期7-13,共8页
In the present investigation the structural proteins associated with MAC-1 bacteriophage have been characterized using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE);tandem mass spectrometry of p... In the present investigation the structural proteins associated with MAC-1 bacteriophage have been characterized using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE);tandem mass spectrometry of protein bands from SDS-PAGE gel;from the open reading frames (ORFs) deduced from MAC-1 genome sequence and amino acid sequence homology searches from the Uniprot database (up000002418). Results have led to the identification of at least three structural proteins associated with MAC-1 phage genome. They are: capsid protein (~55,000-daltons);spike protein (~22,000-daltons) and a low molecular weight DNA binding protein (~4000-dal- tons). In addition, two other minor proteins were tentatively identified as replicative and scaffold proteins based on two to three unique peptides from mass spectrometry data. However, other proteins coded (ORFs) by phage genome remain to be identified. 展开更多
关键词 Bdellovibrio bacteriovorus Bacteriophage MAC-1 Phage structural Proteins MAC-1 Genome MAC-1 genes (ORFs)
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Abundance of antibiotic resistance genes and their association with bacterial communities in activated sludge of wastewater treatment plants: Geographical distribution and network analysis 被引量:9
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作者 Haihan Zhang Huiyan He +6 位作者 Shengnan Chen Tinglin Huang Kuanyu Lu Zhonghui Zhang Rong Wang Xueyao Zhang Hailong Li 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2019年第8期24-38,共15页
Wastewater treatment plants(WWTPs) are deemed reservoirs of antibiotic resistance genes(ARGs). Bacterial phylogeny can shape the resistome in activated sludge. However, the co-occurrence and interaction of ARGs abunda... Wastewater treatment plants(WWTPs) are deemed reservoirs of antibiotic resistance genes(ARGs). Bacterial phylogeny can shape the resistome in activated sludge. However, the co-occurrence and interaction of ARGs abundance and bacterial communities in different WWTPs located at continental scales are still not comprehensively understood. Here, we applied quantitative PCR and Miseq sequence approaches to unveil the changing profiles of ARGs(sul1, sul2, tet W, tet Q, tet X), int I1 gene, and bacterial communities in 18 geographically distributed WWTPs. The results showed that the average relative abundance of sul1 and sul2 genes were 2.08 × 10^(-1) and 1.32 × 10^(-1) copies/16 S rRNA copies, respectively. The abundance of tet W gene was positively correlated with the Shannon diversity index(H′), while both studied sul genes had significant positive relationship with the int I1 gene. The highest average relative abundances of sul1, sul2, tet X, and int I1 genes were found in south region and oxidation ditch system. Network analysis found that 16 bacterial genera co-occurred with tet W gene. Co-occurrence patterns were revealed distinct community interactions between aerobic/anoxic/aerobic and oxidation ditch systems. The redundancy analysis model plot of the bacterial community composition clearly demonstrated that the sludge samples were significant differences among those from the different geographical areas,and the shifts in bacterial community composition were correlated with ARGs. Together,these findings from the present study will highlight the potential risks of ARGs and bacterial populations carrying these ARGs, and enable the development of suitable technique to control the dissemination of ARGs from WWTPs into aquatic environments. 展开更多
关键词 Antibiotic resistance genes ACTIVATE SLUDGE bacterial community Network analysis Mobile genetic elements
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Helicobacter pylori virulence genes 被引量:29
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作者 Anja Sterbenc Erika Jarc +1 位作者 Mario Poljak Matjaz Homan 《World Journal of Gastroenterology》 SCIE CAS 2019年第33期4870-4884,共15页
Helicobacter pylori(H.pylori)is one of the most important human pathogens,infecting approximately half of the global population.Despite its high prevalence,only a subset of H.pylori infected individuals develop seriou... Helicobacter pylori(H.pylori)is one of the most important human pathogens,infecting approximately half of the global population.Despite its high prevalence,only a subset of H.pylori infected individuals develop serious gastroduodenal pathology.The pathogenesis of H.pylori infection and disease outcome is thus thought to be mediated by an intricate interplay between host,environmental and bacterial virulence factors.H.pylori has adapted to the harsh milieu of the human stomach through possession of various virulence genes that enable survival of the bacteria in the acidic environment,movement towards the gastric epithelium,and attachment to gastric epithelial cells.These virulence factors enable successful colonization of the gastric mucosa and sustain persistent H.pylori infection,causing chronic inflammation and tissue damage,which may eventually lead to the development of peptic ulcers and gastric cancer.Numerous studies have focused on the prevalence and role of putative H.pylori virulence genes in disease pathogenesis.While several virulence factors with various functions have been identified,disease associations appear to be less evident,especially among different study populations.This review presents key findings on the most important H.pylori virulence genes,including several bacterial adhesins and toxins,in children and adults,and focuses on their prevalence,clinical significance and potential relationships. 展开更多
关键词 Helicobacter pylori Virulence genes Disease association CHILDREN ADULTS Outer membrane proteins bacterial toxins
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Cloning the Structure Genes and Expression the N Gene of Porcine Epidemic Diarrhea Virus DX 被引量:4
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作者 Jian-qiang LI Ji-xing LIU +8 位作者 Xi LAN Jie CHENG Run WU Zhong-Zi LOU Xiang-ping YIN Xue-rui LI Bao-yu LI Bin YANG Zhi-yong LI 《Virologica Sinica》 SCIE CAS CSCD 2009年第3期179-186,共8页
The structure genes spike(S) ,nucleocapsid(N) ,membrane(M) ,small membrane(sM) of a porcine epidemic diarrhea virus(PEDV) strain DX isolated in Gansu province,North-west of China,were cloned,sequenced and compared wit... The structure genes spike(S) ,nucleocapsid(N) ,membrane(M) ,small membrane(sM) of a porcine epidemic diarrhea virus(PEDV) strain DX isolated in Gansu province,North-west of China,were cloned,sequenced and compared with published sequences of PEDV strains. The nucleotide sequences encoding the entire S,sM,M and N genes open reading frame(ORF) of DX were 4 152,231,681 and 1 326 bases long respectively. There were transcription regulatory sequences(TRSs) upstream of the initiator ATG of the S,N and M genes. The amino acids sequences of S,M and N contained 30,3 and 7 potential asparagine(N) -linked glycosylation sites. Homologous analysis and phylogenetic trees showed that DX had the closest relationship with strains LJB/06,JS-2004-2Z and CH/HLJH/06 that were also isolated from China and indicated the prevalence of some PEDV isolates in China were widespread since the JS-2004-2Z strain originated from the south of the China,and LJB/06 and CH/HLJH/06 were isolated from northeast China. The N gene was cloned using two primers which contained Nco I and BamH I restriction enzyme sites and subcloned into expression vector pET30a. The recombinant plasmid was then transformed into E.coli Rossta. SDS-PAGE showed there was a protein of about 55kDa as expected and Western blot indicated the N protein had biological activity. 展开更多
关键词 CLONING Structure genes N gene EXPRESSION PEDV
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Molecular detection of monocyte chemotactic protein-1 polymorphism in spontaneous bacterial peritonitis patients 被引量:7
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作者 Maysa Kamal Salama Dina Sabry +8 位作者 Mohamed AS Al-Ghussein Rasha Ahmed Sayed AbdAllah Fatma Mohamed Taha Wael Fathy Miriam Safwat Wadie Mona Nabih Amr Abul-Fotouh Tarneem Darwish 《World Journal of Gastroenterology》 SCIE CAS 2014年第33期11793-11799,共7页
AIM: To investigate the association of the functional monocyte chemotactic protein-1 (MCP-1) promoter polymorphism (A-2518G) with spontaneous bacterial peritonitis (SBP).
关键词 Monocyte chemotactic protein-1 GENOTYPE Spontaneous bacterial peritonitis Liver cirrhosis As-cites Gene expression INTERLEUKIN-10
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Characterization of root-associated bacterial community structures in soybean and corn using locked nucleic acid(LNA) oligonucleotide-PCR clamping and 454 pyrosequencing 被引量:6
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作者 YU Zhen-hua YU Jiang +3 位作者 Makoto Ikenaga Masao Sakai LIU Xiao-bing WANG Guang-hua 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2016年第8期1883-1891,共9页
supported in part by grants from the Strategic Priority Research Program of Chinese Academy of Sciences (XDB15010103);the National Natural Science Foundation of China (41201247)
关键词 bacterial diversity high-throughput sequencing corn soybean SSU rRNA genes
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Disruption of bacterial balance in the gut of Portunus trituberculatus induced by Vibrio alginolyticus infection 被引量:3
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作者 XIA Mengjie PEI Feng +2 位作者 MU Changkao YE Yangfang WANG Chunlin 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2018年第5期1891-1898,共8页
A bstract Gut microbiota impacts the health of crustaceans. V ibrio alginolyticus is a main causative pathogen that induces the vibriosis in farmed swimming crabs, Portunus trituberculatus. However, it remains unknown... A bstract Gut microbiota impacts the health of crustaceans. V ibrio alginolyticus is a main causative pathogen that induces the vibriosis in farmed swimming crabs, Portunus trituberculatus. However, it remains unknown whether gut bacteria perform functions during the progression of vibriosis. In this study, 16 SrRNA gene amplicon sequencing was used to investigate temporal alteration of gut bacterial community in swimming crabs in response to 72-h V. alginolyticus challenge. Our results show that V. alginolyticus infection resulted in dynamic changes of bacterial community composition in swimming crabs. Such changes were highlighted by the overwhelming overabundance of V ibrio and a significant fluctuation in the gut bacteria including the bacteria with high relative abundance and especially those with low relative abundance. These findings reveal that crab vibriosis gradually develops with the infection time of V. alginolyticus and tightly relates to the dysbiosis of gut bacterial community structure. This work contributes to our appreciation of the importance of the balance of gut bacterial community structure in maintaining the health of crustaceans. 展开更多
关键词 Portunus trituberculatus Vibrio alginolyticus gut bacterial community composition 16S rRNA gene amplicon sequencing
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