Inverse Halogen Bonds Interactions Involving Br Atom in the Electronic Deficiency Systems of CH3＋… Br-Y （Y--H, CCH, CN, NC）

Inverse halogen bonds interactions involving Br in the electronic deficiency systems of CH3＋...Br-Y （Y=H, CCH, CN, NC） have been investigated by B3LYP/6- 311＋＋G（d, p） and MP2/6-311＋＋G（d, p） methods. The calculated interaction energies with basis set super-position error correction of the four IXBs complexes are 218.87, 219.48, 159.18, and 143.05kJ/mol （MP2/6-311＋＋G（d, p））, respectively. The relative stabilities of the four complexes increased in the order： CH3＋ … BrCN〈CH3＋…- BrNC〈CH3＋… BrH≈CH3＋ …BrCCH. Natural bond orbital theory analysis and the chemical shifts calculation of the related atoms revealed that the charges flow from Br-Y to CH3e. Here, the Br of Br-Y acts as both a halogen bond donor and an electron donor. Therefore, compared with conventional halogen bonds, the IXBs complexes formed between Br-Y and CH3＋. Atoms-in-molecules theory has been used to investigate the topological properties of the critical points of the four IXBs structures which have more covalent content.

Halogen Bonding or Hydrogen Bonding between 2,2,6,6-Tetramethyl- piperidine-noxyl Radical and Trihalomethanes CHX3 （X=CI, Br, I）

The halogen and hydrogen bonding complexes and trihalomethanes （CHX3, X=C1, Br, I） are between 2,2,6,6-tetramethylpiperidine-noxyl simulated by computational quantum chem- istry. The molecular electrostatic potentials, geometrical parameters and interaction energy of halogen and hydrogen bonding complexes combined with natural bond orbital analysis are obtained. The results indicate that both halogen and hydrogen bonding interactions obey the order CI〈Br〈I, and hydrogen bonding is stronger than the corresponding halogen bond- ing. So, hydrogen bonding complexes should be dominant in trihalomethanes. However, it is possible that halogen bonding complex is competitive, even preponderant, in triiodomethane due to the similar interaction energy. This work might provide useful information on specific solvent effects as well as for understanding the mechanism of nitroxide radicals as a bioprobe to interact with the halogenated compounds in biological and biochemical fields.

Ab Initio Calculations on Halogen Bond Between N—Br and Electron-donating Groups

Ab initio calculations of complexes formed between N-bromosuccinimide and a series of electron-donating groups were performed at the level of MP2/Lanl2DZ^＊ to gain a deeper insight into the nature of the N--Br halogen bonding. For the small complexes, H3 C--Br… NH3 and H2 N--Br…NH3 , the primary calculation has demonstrated that the N--Br in H2 N--Br… NH3 can form a much stronger halogen-bonding complex than the C--Br. A comparison of neutral hydrogen bond complex series reveals that the electron-donating capacities of the atoms decrease in the order, N 〉 O 〉 S; 0 （ sp^3 ） 〉 0 （ sp^2 ）, which is adequate for the C--Br halogen bonding. Interaction energies, in conjunction with the geometrical parameters show that the affinitive capacity of trihalide anions X^-3 with N-bromosuccinimide are markedly lower than that of the corresponding X^- with N-bromosuccinimide, even lower than those of neutral molecules with N-bromosueeinimide. AIM analyses further eorffirmed the above results.

Theoretical Study of the Iodine-catalyzed Nucleophilic Addition by Halogen Bond

The iodine-catalyzed nucleophilic addition of pyrrole to acetone has been studied by density functional theory at the level of Lanl2DZ＊. It has been shown that the first iodine molecule appears to have a remarkable catalytic effect on this reaction by halogen bond between carbonyl oxygen and iodine molecule, but the second one does not improve the reaction largely. In general, the nucleophilic addition at the C（2） site of pyrrole is more favorable than that at the C（3） site; however, this trend is not prominent or even changed in acetronitrile solvent for the indole system, which is consistent with the experimental result by Bandgar.

Triangular Halogen Bond and Hydrogen Bond Supramolecular Complex Consisting of Carbon Tetrabromide, Halide, and Solvent Molecule： A Theoretical and Spectroscopic Study

The theoretical calculation and spectroscopic experiments indicate a kind of triangular three bonding supramolecular complexes CBr4…X^-…-H-C, which consist of carbon tetrabromide, halide, and protic solvent molecule （referring to dichloromethane, chloroform and acetonitrile）, can be formed in solution. The strength of halogen and hydrogen bonds in the triangular complexes using halide as common acceptor obeys the order of iodide〉bromide〉chloride. The halogen and hydrogen bonds work weak-cooperatively. Charge transfer bands of halogen bonding complexes between CBra and halide are observed in UV-Vis absorption spectroscopy in three solvents, and then the stoichiometry of 1：1, formation constants K and molar extinction coefficients ε of the halogen bonding complexes are obtained by Benesi-Hildebrand method. The K and ε show a dependence on the solvent dielectric constant and, on the whole, obey an order of iodide〉bromide〉chloride in the same solvents. Furthermore, the C-H vibrational frequencies of solvent molecules vary obviously with the addition of halide, which indicates the C-H…X- interaction. The experimental data indicate that the halogen bond and hydrogen bond coexist by sharing a common halide acceptor as predicted by calculation.

Molecular Dynamics Simulation Study of CIF in Water： Halogen Bonding Interaction in Liquid

Does the halogen bonding interaction co-exist in liquid when it competes with the hydrogen bonding interaction？ The classical molecular dynamics simulations for the solvation properties of CLF molecule in water are performed with the Lennard-Jones plus Coulomb electrostatic potential parameters that are optimized with ab initio interaction energy calculations for the pre-reactive H2O-CLF complex. We find that the halogen bonding interactions occur between O and CL atoms and have the comparable strength and population with respect to the hydrogen bonding interactions of C1...H.

E2/S_(N)2 Selectivity Driven by Reaction Dynamics. Insight into Halogen Bonding

Ubiquitous competition of stereospecific E2 elimination versus SN2 substitution is of central importance in chemical synthesis.Herein,we uncover how the nature of the leaving group affects the intrinsic competing dynamics that remains largely unknown as opposed to its role in reactivity.Results are presented for a prototype case of fluoride anion reacting with ethyl chloride,compared to reacting with ethyl iodide.Chemical dynamics simulations reproduce scattering signatures observed in experiments and reveal that the direct stripping/rebound mechanisms characterize the E2/S_(N)2 reactions,in line with their dynamic fingerprints identified.Quite similar structures and energetics are found for the Cl^(−)and I^(−)leaving halides,whereas the competing dynamics show markedly distinct features.A halogen-bonding attraction is found to be crucial that modifies the interaction potential in the entrance channel and essentially tunes the underlying atomistic behaviors causing a mechanistic shift.This work highlights the dynamical effects induced by a leaving group on the proceedings of baseinduced elimination and nucleophilic substitution,providing a unique insight into the reaction selectivity for complex chemical networks and environments.

Halogen Bonding： An AIM Analysis of the Weak Interactions

A series of complexes formed between halogen-containing molecules and ammonia have been investigated by means of the atoms in molecules （AIM） approach to gain a deeper insight into halogen bonding. The existence of the halogen bond critical points （XBCP） and the values of the electron density （Pb） and Laplacian of electron density （V2pb） at the XBCP reveal the closed-shell interactions in these complexes. Integrated atomic properties such as charge, energy, polarization moment, volume of the halogen bond donor atoms, and the corresponding changes （△） upon complexation have been calculated. The present calculations have demonstrated that the halogen bond represents different AIM properties as compared to the well-documented hydrogen bond. Both the electron density and the Laplacian of electron density at the XBCP have been shown to correlate well with the interaction energy, which indicates that the topological parameters at the XBCP can be treated as a good measure of the halogen bond strength In addition, an excellent linear relationship between the interatomic distance d（X…N） and the logarithm of Pb has been established.

AIM and ELF Analyses of Halogen Bonding in NCS ： BrCl Complexes

The nature of halogen bonding in five complexes formed between the thiocyanate （NCS） radical and a BrC1 molecule was analyzed by quantum theory of atoms in molecules （QTAIM） and electron-localization function （ELF） in this paper. The calculated results show that the geometry of the halogen atom bonded at the N-atom is stable than those bonded at S- or C-atom. The molecular electrostatic potentials determine the geometries and stabilities of the complexes. The valence basin of the S- or N-atom in the electron-donating NCS radical is compressed and its population decreases during the process of formation of the halogen-bonded complexes.

Co-existing Intermolecular Halogen Bonding and Hydrogen Bonding in the Compound Trans-5,10-bis(1-bromodifluoro- acetyl-1-ethoxycarbonyl-methylidene)thianthrene

Trans-5,10-bis(1-bromodifluoroacetyl-1-ethoxycarbonyl-methylidene)thianthrene (1b) was prepared from the reaction of BrCF2COC(N2)CO2Et with thianthrene. X-ray single crystal diffraction analysis showed that the inter-molecular halogen bonding and hydrogen bonding coexisted in this compound. The bromine atom acted as an elec-tron acceptor in the halogen bond and an electron donor in the hydrogen bond. It is the first example that the bro-mine atom acted as such a dual role in the hydrogen and halogen bond.

Cocrystal Assembled by 1,2-Diiodotetrafluorobenzene and Acridine via C-I…N Halogen Bond and π-hole…F Bonds

The concepts on o-hole and ^-hole bonds are suggested. A cocrystal with repeated 8-F-atom unit as basic struc- tural motif is assembled based on bifurcated C-I…N…I-C halogen/σ-hole bond and antiparallel double π-hole… F bonds by 1,2-diiodotetrafluorobenzene and acridine and characterized well by XRD, powder XRD and solid 19F NMR, etc. Also the calculated interaction energies are -26.8 and -31.5 kJ/mol for bifurcated C-I…N sp……2 halogen bonds, and -14.3 kJ/mol for a pair of n-hole…F bonds. In this system C-I…N halogen bond has stronger competitive ability to C-I…π halogen bond due to stronger basicity of N than π-system in acridine. The combination of the halogen/σ-hole and π-hole bonds or together with other weak interactions could play a key role in assembling function materials, molecular recognition and design of drugs and so on.

Halogen Bond Catalysis on Carbonyl-Olefin Ring-Closing Metathesis Reaction:Comparison with Lewis Acid Catalysis

The carbonyl-olefin ring-closing metathesis reactions have become a powerful tool for carbon-carbon bond formation.In this work,the halogen bond catalysis and classical Lewis acid catalysis on the carbonyl-olefin ring-closing metathesis reaction were investigated by density function theory.For both the halogen bond catalysis and classical Lewis acid catalysis,the carbonyl-olefin ring-closing me-tathesis reaction occurs by[2+2]-cycloaddition process and[2+2]-cycloreversion process,the reaction energy barriers are low,there-fore,it can be performed easily at room temperature.The essential difference of the two kinds of catalysts is that the catalytic mecha-nism of halogen bond catalysis is mainly contribution of electrostatic interaction,while that of classical Lewis acid catalysis is mainly catalyzed by orbital interaction.The halogen bond donor catalysts(ICI_(3),IF_(3))are expected to be efficient catalysts for the reaction and further promote the chemical synthesis of carbonyl-olefin ring-closing metathesis reaction.

CO_2 capture through halogen bonding: A theoretical perspective

Halogen bonding interactions between several halogenated ion pairs and CO2 molecules have been investigated by means of density functional theory calculations. To account for the influence of solvent environment, the implicit polarized continuum model was also employed. The bromide and iodide cations of ionic liquids (ILs) under study can interact with CO2 molecules via X O interactions, which become much stronger in strength than those in the complexes of iodo-perfluorobenzenes, very effective halogen bond donors, with CO2 molecules. Such interactions, albeit somewhat weaker in strength, are also observed between halogenated ion pairs and CO2 molecules. Thus, the solubility of CO2 may be improved when using halogenated ILs, as a result of the formation of X O halogen bonds. Under solvent effects, the strength of the interactions tends to be weakened to some degree, with a concomitant elongation of intermolecular distances. The results presented here would be very useful in the design and synthesis of novel and potent ILs for CO2 physical absorption.

The role of halogen bonding in improving OFET performance of a naphthalenediimide derivative

Controlling microstructure and thin film morphology of organic semiconductors by supramolecular arrangement is critical to improving their device performance. To realize well-controlling supramolecular assembly, a core-expanded naphthalene diimides derivative （1） was designed and synthesized as an n-type organic semiconductor and also as a halogen bonding （XB） donor that could form complementary XBs with 2,2-dipyridine or 2,2-bipyrimidine acceptor. The XB interactions in the solid state of 1/2,2- dipyridine and 1/2,2-bipyrimidine were confirmed by a series of characterization methods, such as thermal gravimetric analysis （TGA）, X-ray photoelectron spectroscopy （XPS）, nuclear magnetic resonance （NMR） involving 13F NMR and solid-state 13C NMR. Organic field-effect transistors （OFETs） based on XB complexes 1/2,2-dipyridine or 1/2,2-bipyrimidine showed better device performance than that of devices based on pure 1, with the average electron mobility increased more than doubled （from 0.027cm2V-1 s-1 to 0.070cm2V-1 s-1）.

Theoretical study of the interaction mechanism of single-electron halogen bond complexes H_3C…Br-Y(Y=H,CN,NC,CCH,C_2H_3)

The characteristics and structures of single-electron halogen bond complexes H3C…Br-Y(Y = H,CCH,CN,NC,C2H3) have been investigated by theoretical calculation methods.The geometries were optimized and frequencies calculated at the B3LYP/6-311++G level.The interaction energies were corrected for basis set superposition error(BSSE) and the wavefunctions obtained by the natural bond orbital(NBO) and atom in molecule(AIM) analyses at the MP2/6-311++G level.For each H3C…Br-Y complex,a single-electron Br bond is formed between the unpaired electron of the CH3(electron donor) radical and the Br atom of Br-Y(electron acceptor);this kind of single-electron bromine bond also possesses the character of a"three-electron bond".Due to the formation of the single-electron Br bond,the C-H bonds of the CH3 radical bend away from the Br-Y moiety and the Br-Y bond elongates,giving red-shifted single-electron Br bond complexes.The effects of substituents,hybridization of the carbon atom,and solvent on the properties of the complexes have been investigated.The strengths of single-electron hydrogen bonds,single-electron halogen bonds and single-electron lithium bonds have been compared.In addition,the single-electron halogen bond system is discussed in the light of the first three criteria for hydrogen bonding proposed by Popelier.

Halogen bonding-driven formation of supramolecular macrocycles and double helix

The crystal structures of three intramolecularly hydrogen bonded rigid aromatic amide derivatives,which all bear one iodine atom at one end as the donor and one pyridine unit at the other end as the acceptor,have been described to reveal the utility of halogen bonding in inducing the formation of supramolecular macrocycles.All the three compounds formed intermolecular I···N halogen bonding.For short compound 1,halogen bonding induced the formation of an extended supramolecular array.For longer folded compounds 2 and 3,halogen bonding could hold two molecules to form supramolecular macrocycles even by adopting a highly distorted,energetically less favorable conformation(for 3).Depending on the solvent for the growth of crystals,compound 3 could also gave rise to a halogen bonded supramolecular double helix.

Halogen bonded two-dimensional supramolecular assemblies studied by high resolution scanning tunneling microscopy

We described the formation of self-organized two-dimensional (2D) assemblies of N-(2,3,5,6-tetrafluoro- 4-iodophenyl)hexadecylamine and 1-dodecyl-imidazole at the liquid/HOPG interface. The two-dimen- sional assemblies showed a fishbone-like pattern structure as revealed by high-resolution scanning tunneling microscopy. Although different interactions can drive the formation of 2D assemblies, as far as we know, this is the first report on halogen bond-driven 2D assemblies.

Investigation of Intermolecular C-H···Halogen Hydrogen Bonded Supramolecular Assemblies in Three Copper(Ⅰ) Complexes Formed by 3,3'-Dimethoxy-6,6'-dimethyl-2,2'-bipyridine Ligand

Three new crystalline compounds 1-3 were successfully obtained by the reactions of 3,3＇-dimethoxy-6,6＇-dimethyl-2,2＇-bipyridine ligand（dmbp） with the corresponding Cu（Ⅰ） salts.Crystal data for 1：orthorhombic Pbca,a = 18.5858（12）,b = 8.1821（5）,c = 20.6066（13） ,V = 3133.7（3） 3,Z = 8,Dc = 1.843 g/cm3,F（000） = 1696,μ = 3.366 mm-1,the final R = 0.0223 and wR = 0.0542.Crystal data for 2：Orthorhombic Pbca,a = 18.7883（16）,b = 8.3249（7）,c = 19.0294（17） ,V = 2976.4（4） 3,Z = 8,Dc = 1.731 g/cm3,F（000） = 1552,μ = 4.154 mm-1,the final R = 0.0279 and wR = 0.0680.Crystal data for 3：monoclinic P21/c,a = 13.812（10）,b = 9.910（7）,c = 23.444（17） ,β = 104.3350（10）°,V = 3090（4） 3,Z = 4,Dc = 1.476 g/cm3,F（000） = 1408,μ = 1.588 mm-1,the final R = 0.0479 and wR = 0.1081.The results of X-ray crystallographic analysis revealed that C14H16ICuN2O2（1） and C14H16BrCuN2O2（2） are isostructural compounds with the dimers connected by C-H···halogen hydrogen bonds to generate a three-dimensional（3D） supramolecular network in 1 and a two-dimensional（2D） sheet structure in 2,respectively,while the mononuclear complex C28H32Cl2Cu2N4O4（3） is ionic.In 3,the [Cu（dmbp）2]＋ cations and [ClCuCl]-anions are connected by C-H···Cl hydrogen bonds to form a one-dimensional（1D） chain along the a axis.Therefore,in the three complexes,the C-H···halogen hydrogen bonds dominate their crystal structures.Additionally,The UV luminescent properties of complexes 1-3 were investigated.

大学有机化学教材引入卤键的必要性研究

卤键是存在于分子间或分子内的一种非共价吸引相互作用,近年来逐渐成为化学、生物、材料等学科研究的热门领域之一。2013年,IUPAC已给出了卤键的明确定义。而在大学有机化学教材中,很多重要的有机化学反应都有卤素分子的参与。通过采用量子化学计算,本文证明了卤素分子参与的相关有机化学反应中都有卤键的存在,并指出在教材中引入卤键概念对于学生准确理解和熟练掌握这些重要反应的必要性。

奇特氟效应:一个有效构筑不敏感含能材料的重要因素

研究设计、合成并表征了化合物5,7-二(三氟甲基)-2-(二硝甲基)-[1,2,4]三唑[1,5-a]嘧啶(1)。采用差示扫描量热仪、高斯03及EXPLO5 v6.05软件分别测试或计算了其热性能、生成焓和爆轰性能,并通过Hirschfeld表面分析、2D指纹图谱、静电势(ESP)对化合物1和已报道的偕二硝甲基含能化合物进行了对比研究。结果表明,化合物1具有较低的机械感度,其撞击感度>40 J,摩擦感度>360 N,这与已报道的CHON型偕二硝甲基含能化合物的敏感性有很大不同。单晶堆积及分子间作用力的计算结果表明化合物1中的卤键(C—F…X)能够有效打断分子之间O…O相互作用的生成。此外,由于三氟甲基的存在,化合物1展示出较为优越的静电势值和静电势偏移值,从而使其比其它偕二硝甲基含能化合物更加稳定。