A novel method for clustering cellular data to improve classification

Many fields,such as neuroscience,are experiencing the vast prolife ration of cellular data,underscoring the need fo r organizing and interpreting large datasets.A popular approach partitions data into manageable subsets via hierarchical clustering,but objective methods to determine the appropriate classification granularity are missing.We recently introduced a technique to systematically identify when to stop subdividing clusters based on the fundamental principle that cells must differ more between than within clusters.Here we present the corresponding protocol to classify cellular datasets by combining datadriven unsupervised hierarchical clustering with statistical testing.These general-purpose functions are applicable to any cellular dataset that can be organized as two-dimensional matrices of numerical values,including molecula r,physiological,and anatomical datasets.We demonstrate the protocol using cellular data from the Janelia MouseLight project to chara cterize morphological aspects of neurons.

Subspace Clustering in High-Dimensional Data Streams:A Systematic Literature Review

Clustering high dimensional data is challenging as data dimensionality increases the distance between data points,resulting in sparse regions that degrade clustering performance.Subspace clustering is a common approach for processing high-dimensional data by finding relevant features for each cluster in the data space.Subspace clustering methods extend traditional clustering to account for the constraints imposed by data streams.Data streams are not only high-dimensional,but also unbounded and evolving.This necessitates the development of subspace clustering algorithms that can handle high dimensionality and adapt to the unique characteristics of data streams.Although many articles have contributed to the literature review on data stream clustering,there is currently no specific review on subspace clustering algorithms in high-dimensional data streams.Therefore,this article aims to systematically review the existing literature on subspace clustering of data streams in high-dimensional streaming environments.The review follows a systematic methodological approach and includes 18 articles for the final analysis.The analysis focused on two research questions related to the general clustering process and dealing with the unbounded and evolving characteristics of data streams.The main findings relate to six elements:clustering process,cluster search,subspace search,synopsis structure,cluster maintenance,and evaluation measures.Most algorithms use a two-phase clustering approach consisting of an initialization stage,a refinement stage,a cluster maintenance stage,and a final clustering stage.The density-based top-down subspace clustering approach is more widely used than the others because it is able to distinguish true clusters and outliers using projected microclusters.Most algorithms implicitly adapt to the evolving nature of the data stream by using a time fading function that is sensitive to outliers.Future work can focus on the clustering framework,parameter optimization,subspace search techniques,memory-efficient synopsis structures,explicit cluster change detection,and intrinsic performance metrics.This article can serve as a guide for researchers interested in high-dimensional subspace clustering methods for data streams.

Multi-Step Clustering of Smart Meters Time Series:Application to Demand Flexibility Characterization of SME Customers

Customer segmentation according to load-shape profiles using smart meter data is an increasingly important application to vital the planning and operation of energy systems and to enable citizens’participation in the energy transition.This study proposes an innovative multi-step clustering procedure to segment customers based on load-shape patterns at the daily and intra-daily time horizons.Smart meter data is split between daily and hourly normalized time series to assess monthly,weekly,daily,and hourly seasonality patterns separately.The dimensionality reduction implicit in the splitting allows a direct approach to clustering raw daily energy time series data.The intraday clustering procedure sequentially identifies representative hourly day-unit profiles for each customer and the entire population.For the first time,a step function approach is applied to reduce time series dimensionality.Customer attributes embedded in surveys are employed to build external clustering validation metrics using Cramer’s V correlation factors and to identify statistically significant determinants of load-shape in energy usage.In addition,a time series features engineering approach is used to extract 16 relevant demand flexibility indicators that characterize customers and corresponding clusters along four different axes:available Energy(E),Temporal patterns(T),Consistency(C),and Variability(V).The methodology is implemented on a real-world electricity consumption dataset of 325 Small and Medium-sized Enterprise(SME)customers,identifying 4 daily and 6 hourly easy-to-interpret,well-defined clusters.The application of the methodology includes selecting key parameters via grid search and a thorough comparison of clustering distances and methods to ensure the robustness of the results.Further research can test the scalability of the methodology to larger datasets from various customer segments(households and large commercial)and locations with different weather and socioeconomic conditions.

Improved Data Stream Clustering Method: Incorporating KD-Tree for Typicality and Eccentricity-Based Approach

Data stream clustering is integral to contemporary big data applications.However,addressing the ongoing influx of data streams efficiently and accurately remains a primary challenge in current research.This paper aims to elevate the efficiency and precision of data stream clustering,leveraging the TEDA(Typicality and Eccentricity Data Analysis)algorithm as a foundation,we introduce improvements by integrating a nearest neighbor search algorithm to enhance both the efficiency and accuracy of the algorithm.The original TEDA algorithm,grounded in the concept of“Typicality and Eccentricity Data Analytics”,represents an evolving and recursive method that requires no prior knowledge.While the algorithm autonomously creates and merges clusters as new data arrives,its efficiency is significantly hindered by the need to traverse all existing clusters upon the arrival of further data.This work presents the NS-TEDA(Neighbor Search Based Typicality and Eccentricity Data Analysis)algorithm by incorporating a KD-Tree(K-Dimensional Tree)algorithm integrated with the Scapegoat Tree.Upon arrival,this ensures that new data points interact solely with clusters in very close proximity.This significantly enhances algorithm efficiency while preventing a single data point from joining too many clusters and mitigating the merging of clusters with high overlap to some extent.We apply the NS-TEDA algorithm to several well-known datasets,comparing its performance with other data stream clustering algorithms and the original TEDA algorithm.The results demonstrate that the proposed algorithm achieves higher accuracy,and its runtime exhibits almost linear dependence on the volume of data,making it more suitable for large-scale data stream analysis research.

Research on Tensor Multi-Clustering Distributed Incremental Updating Method for Big Data

The scale and complexity of big data are growing continuously,posing severe challenges to traditional data processing methods,especially in the field of clustering analysis.To address this issue,this paper introduces a new method named Big Data Tensor Multi-Cluster Distributed Incremental Update(BDTMCDIncreUpdate),which combines distributed computing,storage technology,and incremental update techniques to provide an efficient and effective means for clustering analysis.Firstly,the original dataset is divided into multiple subblocks,and distributed computing resources are utilized to process the sub-blocks in parallel,enhancing efficiency.Then,initial clustering is performed on each sub-block using tensor-based multi-clustering techniques to obtain preliminary results.When new data arrives,incremental update technology is employed to update the core tensor and factor matrix,ensuring that the clustering model can adapt to changes in data.Finally,by combining the updated core tensor and factor matrix with historical computational results,refined clustering results are obtained,achieving real-time adaptation to dynamic data.Through experimental simulation on the Aminer dataset,the BDTMCDIncreUpdate method has demonstrated outstanding performance in terms of accuracy(ACC)and normalized mutual information(NMI)metrics,achieving an accuracy rate of 90%and an NMI score of 0.85,which outperforms existing methods such as TClusInitUpdate and TKLClusUpdate in most scenarios.Therefore,the BDTMCDIncreUpdate method offers an innovative solution to the field of big data analysis,integrating distributed computing,incremental updates,and tensor-based multi-clustering techniques.It not only improves the efficiency and scalability in processing large-scale high-dimensional datasets but also has been validated for its effectiveness and accuracy through experiments.This method shows great potential in real-world applications where dynamic data growth is common,and it is of significant importance for advancing the development of data analysis technology.

A State-Migration Particle Swarm Optimizer for Adaptive Latent Factor Analysis of High-Dimensional and Incomplete Data

High-dimensional and incomplete(HDI) matrices are primarily generated in all kinds of big-data-related practical applications. A latent factor analysis(LFA) model is capable of conducting efficient representation learning to an HDI matrix,whose hyper-parameter adaptation can be implemented through a particle swarm optimizer(PSO) to meet scalable requirements.However, conventional PSO is limited by its premature issues,which leads to the accuracy loss of a resultant LFA model. To address this thorny issue, this study merges the information of each particle's state migration into its evolution process following the principle of a generalized momentum method for improving its search ability, thereby building a state-migration particle swarm optimizer(SPSO), whose theoretical convergence is rigorously proved in this study. It is then incorporated into an LFA model for implementing efficient hyper-parameter adaptation without accuracy loss. Experiments on six HDI matrices indicate that an SPSO-incorporated LFA model outperforms state-of-the-art LFA models in terms of prediction accuracy for missing data of an HDI matrix with competitive computational efficiency.Hence, SPSO's use ensures efficient and reliable hyper-parameter adaptation in an LFA model, thus ensuring practicality and accurate representation learning for HDI matrices.

Censored Composite Conditional Quantile Screening for High-Dimensional Survival Data

In this paper,we introduce the censored composite conditional quantile coefficient(cC-CQC)to rank the relative importance of each predictor in high-dimensional censored regression.The cCCQC takes advantage of all useful information across quantiles and can detect nonlinear effects including interactions and heterogeneity,effectively.Furthermore,the proposed screening method based on cCCQC is robust to the existence of outliers and enjoys the sure screening property.Simulation results demonstrate that the proposed method performs competitively on survival datasets of high-dimensional predictors,particularly when the variables are highly correlated.

Optimal Estimation of High-Dimensional Covariance Matrices with Missing and Noisy Data

The estimation of covariance matrices is very important in many fields, such as statistics. In real applications, data are frequently influenced by high dimensions and noise. However, most relevant studies are based on complete data. This paper studies the optimal estimation of high-dimensional covariance matrices based on missing and noisy sample under the norm. First, the model with sub-Gaussian additive noise is presented. The generalized sample covariance is then modified to define a hard thresholding estimator , and the minimax upper bound is derived. After that, the minimax lower bound is derived, and it is concluded that the estimator presented in this article is rate-optimal. Finally, numerical simulation analysis is performed. The result shows that for missing samples with sub-Gaussian noise, if the true covariance matrix is sparse, the hard thresholding estimator outperforms the traditional estimate method.

CSFW-SC: Cuckoo Search Fuzzy-Weighting Algorithm for Subspace Clustering Applying to High-Dimensional Clustering

Aimed at the issue that traditional clustering methods are not appropriate to high-dimensional data, a cuckoo search fuzzy-weighting algorithm for subspace clustering is presented on the basis of the exited soft subspace clustering algorithm. In the proposed algorithm, a novel objective function is firstly designed by considering the fuzzy weighting within-cluster compactness and the between-cluster separation, and loosening the constraints of dimension weight matrix. Then gradual membership and improved Cuckoo search, a global search strategy, are introduced to optimize the objective function and search subspace clusters, giving novel learning rules for clustering. At last, the performance of the proposed algorithm on the clustering analysis of various low and high dimensional datasets is experimentally compared with that of several competitive subspace clustering algorithms. Experimental studies demonstrate that the proposed algorithm can obtain better performance than most of the existing soft subspace clustering algorithms.

Clustering algorithm for multiple data streams based on spectral component similarity

A new algorithm for clustering multiple data streams is proposed.The algorithm can effectively cluster data streams which show similar behavior with some unknown time delays.The algorithm uses the autoregressive （AR） modeling technique to measure correlations between data streams.It exploits estimated frequencies spectra to extract the essential features of streams.Each stream is represented as the sum of spectral components and the correlation is measured component-wise.Each spectral component is described by four parameters,namely,amplitude,phase,damping rate and frequency.The ε-lag-correlation between two spectral components is calculated.The algorithm uses such information as similarity measures in clustering data streams.Based on a sliding window model,the algorithm can continuously report the most recent clustering results and adjust the number of clusters.Experiments on real and synthetic streams show that the proposed clustering method has a higher speed and clustering quality than other similar methods.

Scaling up the DBSCAN Algorithm for Clustering Large Spatial Databases Based on Sampling Technique

Clustering, in data mining, is a useful technique for discovering interesting data distributions and patterns in the underlying data, and has many application fields, such as statistical data analysis, pattern recognition, image processing, and etc. We combine sampling technique with DBSCAN algorithm to cluster large spatial databases, and two sampling based DBSCAN (SDBSCAN) algorithms are developed. One algorithm introduces sampling technique inside DBSCAN, and the other uses sampling procedure outside DBSCAN. Experimental results demonstrate that our algorithms are effective and efficient in clustering large scale spatial databases.

Clustering Structure Analysis in Time-Series Data With Density-Based Clusterability Measure

Clustering is used to gain an intuition of the struc tures in the data.Most of the current clustering algorithms pro duce a clustering structure even on data that do not possess such structure.In these cases,the algorithms force a structure in the data instead of discovering one.To avoid false structures in the relations of data,a novel clusterability assessment method called density-based clusterability measure is proposed in this paper.I measures the prominence of clustering structure in the data to evaluate whether a cluster analysis could produce a meaningfu insight to the relationships in the data.This is especially useful in time-series data since visualizing the structure in time-series data is hard.The performance of the clusterability measure is evalu ated against several synthetic data sets and time-series data sets which illustrate that the density-based clusterability measure can successfully indicate clustering structure of time-series data.

Local and global approaches of affinity propagation clustering for large scale data

Recently a new clustering algorithm called 'affinity propagation' (AP) has been proposed, which efficiently clustered sparsely related data by passing messages between data points. However, we want to cluster large scale data where the similarities are not sparse in many cases. This paper presents two variants of AP for grouping large scale data with a dense similarity matrix. The local approach is partition affinity propagation (PAP) and the global method is landmark affinity propagation (LAP). PAP passes messages in the subsets of data first and then merges them as the number of initial step of iterations; it can effectively reduce the number of iterations of clustering. LAP passes messages between the landmark data points first and then clusters non-landmark data points; it is a large global approximation method to speed up clustering. Experiments are conducted on many datasets, such as random data points, manifold subspaces, images of faces and Chinese calligraphy, and the results demonstrate that the two ap-proaches are feasible and practicable.

CABOSFV algorithm for high dimensional sparse data clustering

An algorithm, Clustering Algorithm Based On Sparse Feature Vector (CABOSFV),was proposed for the high dimensional clustering of binary sparse data. This algorithm compressesthe data effectively by using a tool 'Sparse Feature Vector', thus reduces the data scaleenormously, and can get the clustering result with only one data scan. Both theoretical analysis andempirical tests showed that CABOSFV is of low computational complexity. The algorithm findsclusters in high dimensional large datasets efficiently and handles noise effectively.

An Asynchronous Clustering and Mobile Data Gathering Schema Based on Timer Mechanism in Wireless Sensor Networks

Recently,Wireless sensor networks(WSNs)have become very popular research topics which are applied to many applications.They provide pervasive computing services and techniques in various potential applications for the Internet of Things(IoT).An Asynchronous Clustering and Mobile Data Gathering based on Timer Mechanism(ACMDGTM)algorithm is proposed which would mitigate the problem of“hot spots”among sensors to enhance the lifetime of networks.The clustering process takes sensors’location and residual energy into consideration to elect suitable cluster heads.Furthermore,one mobile sink node is employed to access cluster heads in accordance with the data overflow time and moving time from cluster heads to itself.Related experimental results display that the presented method can avoid long distance communicate between sensor nodes.Furthermore,this algorithm reduces energy consumption effectively and improves package delivery rate.

Metaheuristic Clustering Protocol for Healthcare DataCollection in MobileWireless Multimedia Sensor Networks

Nowadays,healthcare applications necessitate maximum volume of medical data to be fed to help the physicians,academicians,pathologists,doctors and other healthcare professionals.Advancements in the domain of Wireless Sensor Networks(WSN)andMultimediaWireless Sensor Networks(MWSN)are tremendous.M-WMSN is an advanced form of conventional Wireless Sensor Networks(WSN)to networks that use multimedia devices.When compared with traditional WSN,the quantity of data transmission in M-WMSN is significantly high due to the presence of multimedia content.Hence,clustering techniques are deployed to achieve low amount of energy utilization.The current research work aims at introducing a new Density Based Clustering(DBC)technique to achieve energy efficiency inWMSN.The DBC technique is mainly employed for data collection in healthcare environment which primarily depends on three input parameters namely remaining energy level,distance,and node centrality.In addition,two static data collector points called Super Cluster Head(SCH)are placed,which collects the data from normal CHs and forwards it to the Base Station(BS)directly.SCH supports multi-hop data transmission that assists in effectively balancing the available energy.Adetailed simulation analysiswas conducted to showcase the superior performance of DBC technique and the results were examined under diverse aspects.The simulation outcomes concluded that the proposed DBC technique improved the network lifetime to a maximum of 16,500 rounds,which is significantly higher compared to existing methods.

Similarity measurement method of high-dimensional data based on normalized net lattice subspace

The performance of conventional similarity measurement methods is affected seriously by the curse of dimensionality of high-dimensional data.The reason is that data difference between sparse and noisy dimensionalities occupies a large proportion of the similarity,leading to the dissimilarities between any results.A similarity measurement method of high-dimensional data based on normalized net lattice subspace is proposed.The data range of each dimension is divided into several intervals,and the components in different dimensions are mapped onto the corresponding interval.Only the component in the same or adjacent interval is used to calculate the similarity.To validate this method,three data types are used,and seven common similarity measurement methods are compared.The experimental result indicates that the relative difference of the method is increasing with the dimensionality and is approximately two or three orders of magnitude higher than the conventional method.In addition,the similarity range of this method in different dimensions is [0,1],which is fit for similarity analysis after dimensionality reduction.

An air combat maneuver pattern extraction based on time series segmentation and clustering analysis

Target maneuver recognition is a prerequisite for air combat situation awareness,trajectory prediction,threat assessment and maneuver decision.To get rid of the dependence of the current target maneuver recognition method on empirical criteria and sample data,and automatically and adaptively complete the task of extracting the target maneuver pattern,in this paper,an air combat maneuver pattern extraction based on time series segmentation and clustering analysis is proposed by combining autoencoder,G-G clustering algorithm and the selective ensemble clustering analysis algorithm.Firstly,the autoencoder is used to extract key features of maneuvering trajectory to remove the impacts of redundant variables and reduce the data dimension;Then,taking the time information into account,the segmentation of Maneuver characteristic time series is realized with the improved FSTS-AEGG algorithm,and a large number of maneuver primitives are extracted;Finally,the maneuver primitives are grouped into some categories by using the selective ensemble multiple time series clustering algorithm,which can prove that each class represents a maneuver action.The maneuver pattern extraction method is applied to small scale air combat trajectory and can recognize and correctly partition at least 71.3%of maneuver actions,indicating that the method is effective and satisfies the requirements for engineering accuracy.In addition,this method can provide data support for various target maneuvering recognition methods proposed in the literature,greatly reduce the workload and improve the recognition accuracy.

Linear manifold clustering for high dimensional data based on line manifold searching and fusing

High dimensional data clustering,with the inherent sparsity of data and the existence of noise,is a serious challenge for clustering algorithms.A new linear manifold clustering method was proposed to address this problem.The basic idea was to search the line manifold clusters hidden in datasets,and then fuse some of the line manifold clusters to construct higher dimensional manifold clusters.The orthogonal distance and the tangent distance were considered together as the linear manifold distance metrics. Spatial neighbor information was fully utilized to construct the original line manifold and optimize line manifolds during the line manifold cluster searching procedure.The results obtained from experiments over real and synthetic data sets demonstrate the superiority of the proposed method over some competing clustering methods in terms of accuracy and computation time.The proposed method is able to obtain high clustering accuracy for various data sets with different sizes,manifold dimensions and noise ratios,which confirms the anti-noise capability and high clustering accuracy of the proposed method for high dimensional data.

A new clustering algorithm for large datasets

The Circle algorithm was proposed for large datasets.The idea of the algorithm is to find a set of vertices that are close to each other and far from other vertices.This algorithm makes use of the connection between clustering aggregation and the problem of correlation clustering.The best deterministic approximation algorithm was provided for the variation of the correlation of clustering problem,and showed how sampling can be used to scale the algorithms for large datasets.An extensive empirical evaluation was given for the usefulness of the problem and the solutions.The results show that this method achieves more than 50% reduction in the running time without sacrificing the quality of the clustering.