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High-throughput microfluidic production of carbon capture microcapsules:fundamentals,applications,and perspectives
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作者 Xiangdong Liu Wei Gao +2 位作者 Yue Lu Liangyu Wu Yongping Chen 《International Journal of Extreme Manufacturing》 SCIE EI CAS CSCD 2024年第3期330-361,共32页
In the last three decades,carbon dioxide(CO_(2)) emissions have shown a significant increase from various sources.To address this pressing issue,the importance of reducing CO_(2) emissions has grown,leading to increas... In the last three decades,carbon dioxide(CO_(2)) emissions have shown a significant increase from various sources.To address this pressing issue,the importance of reducing CO_(2) emissions has grown,leading to increased attention toward carbon capture,utilization,and storage strategies.Among these strategies,monodisperse microcapsules,produced by using droplet microfluidics,have emerged as promising tools for carbon capture,offering a potential solution to mitigate CO_(2) emissions.However,the limited yield of microcapsules due to the inherent low flow rate in droplet microfluidics remains a challenge.In this comprehensive review,the high-throughput production of carbon capture microcapsules using droplet microfluidics is focused on.Specifically,the detailed insights into microfluidic chip fabrication technologies,the microfluidic generation of emulsion droplets,along with the associated hydrodynamic considerations,and the generation of carbon capture microcapsules through droplet microfluidics are provided.This review highlights the substantial potential of droplet microfluidics as a promising technique for large-scale carbon capture microcapsule production,which could play a significant role in achieving carbon neutralization and emission reduction goals. 展开更多
关键词 carbon capture MICROCAPSULES droplet microfluidic high-throughput production carbon neutralization
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High-throughput computational screening and design of nanoporous materials for methane storage and carbon dioxide capture 被引量:2
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作者 Minman Tong Youshi Lan +1 位作者 Qingyuan Yang Chongli Zhong 《Green Energy & Environment》 SCIE 2018年第2期107-119,共13页
The globally increasing concentrations of greenhouse gases in atmosphere after combustion of coal-or petroleum-based fuels give rise to tremendous interest in searching for porous materials to efficiently capture carb... The globally increasing concentrations of greenhouse gases in atmosphere after combustion of coal-or petroleum-based fuels give rise to tremendous interest in searching for porous materials to efficiently capture carbon dioxide(CO_2) and store methane(CH4), where the latter is a kind of clean energy source with abundant reserves and lower CO_2 emission. Hundreds of thousands of porous materials can be enrolled on the candidate list, but how to quickly identify the really promising ones, or even evolve materials(namely, rational design high-performing candidates) based on the large database of present porous materials? In this context, high-throughput computational techniques, which have emerged in the past few years as powerful tools, make the targets of fast evaluation of adsorbents and evolving materials for CO_2 capture and CH_4 storage feasible. This review provides an overview of the recent computational efforts on such related topics and discusses the further development in this field. 展开更多
关键词 high-throughput computation Screening and design Nanoporous materials CO2 capture CH4 storage
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High-throughput screening of mouse gene knockouts identifies established and novel skeletal phenotypes 被引量:7
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作者 Robert Brommage Jeff Liu +6 位作者 Gwenn M Hansen Laura L Kirkpatrick David G Potter Arthur T Ss Brian Zambrowicz David R Powell Peter Vogel 《Bone Research》 SCIE CAS 2014年第3期152-181,共30页
Screening gene function in vivo is a powerful approach to discover novel drug targets. We present high-throughput screening (HTS) data for 3 762 distinct global gene knockout (KO) mouse lines with viable adult hom... Screening gene function in vivo is a powerful approach to discover novel drug targets. We present high-throughput screening (HTS) data for 3 762 distinct global gene knockout (KO) mouse lines with viable adult homozygous mice generated using either gene-trap or homologous recombination technologies. Bone mass was determined from DEXA scans of male and female mice at 14 weeks of age and by microCT analyses of bones from male mice at 16 weeks of age. Wild-type (WT) cagemates/littermates were examined for each gene KO. Lethality was observed in an additional 850 KO lines. Since primary HTS are susceptible to false positive findings, additional cohorts of mice from KO lines with intriguing HTS bone data were examined. Aging, ovariectomy, histomorphometry and bone strength studies were performed and possible non-skeletal phenotypes were explored. Together, these screens identified multiple genes affecting bone mass: 23 previously reported genes (Calcr, Cebpb, Crtap, Dcstamp, Dkkl, Duoxa2, Enppl, Fgf23, Kissl/Kisslr, Kl (Klotho), Lrp5, Mstn, Neol, Npr2, Ostml, Postn, Sfrp4, S1c30a5, Sic39a13, Sost, Sumf1, Src, Wnt10b), five novel genes extensively characterized (Cldn18, Fam20c, Lrrkl, Sgpll, Wnt16), five novel genes with preliminary characterization (Agpat2, RassfS, Slc10a7, Stc26a7, Slc30a10) and three novel undisclosed genes coding for potential osteoporosis drug targets. 展开更多
关键词 KO high-throughput screening of mouse gene knockouts identifies established and novel skeletal phenotypes BMD HTS DEXA gene
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A New High-throughput Real-time PCR Assay for the Screening of Multiple Antimicrobial Resistance Genes in Broiler Fecal Samples from China 被引量:2
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作者 CHE Jie LU Jin Xing +6 位作者 LI Wen Ge ZHANG Yun Fei ZHAO Xiao Fei YUAN Min BAI Xue Mei CHEN Xia LI Juan 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2019年第12期881-892,共12页
Objective Antimicrobial resistance(AMR)has become a global concern and is especially severe in China.To effectively and reliably provide AMR data,we developed a new high-throughput real-time PCR assay based on microfl... Objective Antimicrobial resistance(AMR)has become a global concern and is especially severe in China.To effectively and reliably provide AMR data,we developed a new high-throughput real-time PCR assay based on microfluidic dynamic technology,and screened multiple AMR genes in broiler fecal samples.Methods A high-throughput real-time PCR system with an new designed integrated fluidic circuit assay were performed AMR gene detection.A total of 273 broiler fecal samples collected from two geographically separated farms were screened AMR genes.Results The new assay with limits of detection ranging from 40.9 to 8,000 copies/reaction.The sensitivity rate,specificity rate,positive predictive value,negative predictive value and correct indices were 99.30%,98.08%,95.31%,99.79%,and 0.9755,respectively.Utilizing this assay,we demonstrate that AMR genes are widely spread,with positive detection rates ranging from 0 to 97.07%in 273 broiler fecal samples.bla CTX-M,bla TEM,mcr-1,fex A,cfr,optr A,and int I1 showed over 80%prevalence.The dissemination of AMR genes was distinct between the two farms.Conclusions We successfully established a new high-throughput real-time PCR assay applicable to AMR gene surveillance from fecal samples.The widespread existence of AMR genes detected in broiler farms highlights the current and severe problem of AMR. 展开更多
关键词 Antimicrobial resistance Antimicrobial resistance gene high-throughput real-time PCR array Broiler fecal sample
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Laser capture microdissection enables cellular and molecular studies of tooth root development 被引量:1
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作者 Jian-Xun Sun Orapin V Horst +3 位作者 Roger Bumgarner Bryce Lakely Martha J Somerman Hai Zhang 《International Journal of Oral Science》 SCIE CAS CSCD 2012年第1期7-13,共7页
Epithelial-mesenchymal interactions(EMIs) are critical for tooth development.Molecular mechanisms mediating these interactions in root formation is not well understood.Laser capture microdissection(LCM) and subseq... Epithelial-mesenchymal interactions(EMIs) are critical for tooth development.Molecular mechanisms mediating these interactions in root formation is not well understood.Laser capture microdissection(LCM) and subsequent microarray analyses enable large scale in situ molecular and cellular studies of root formation but to date have been hindered by technical challenges of gaining intact histological sections of non-decalcified mineralized teeth or jaws with well-preserved RNA.Here,we describe a new method to overcome this obstacle that permits LCM of dental epithelia,adjacent mesenchyme,odontoblasts and cementoblasts from mouse incisors and molars during root development.Using this method,we obtained RNA samples of high quality and successfully performed microarray analyses.Robust differences in gene expression,as well as genes not previously associated with root formation,were identified.Comparison of gene expression data from microarray with real-time reverse transcriptase polymerase chain reaction(RT-PCR) supported our findings.These genes include known markers of dental epithelia,mesenchyme,cementoblasts and odontoblasts,as well as novel genes such as those in the fibulin family.In conclusion,our new approach in tissue preparation enables LCM collection of intact cells with well-preserved RNA allowing subsequent gene expression analyses using microarray and RT-PCR to define key regulators of tooth root development. 展开更多
关键词 gene laser capture microdissection microarray PCR root
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Screening differentially expressed genes from cyclin B1 down-regulated by high-throughput gene chip
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作者 Xian-He Xie Wan-Zun Lin +2 位作者 Wei-Li Zheng Ting Chen Jun-Jin Liu 《Journal of Hainan Medical University》 2018年第1期1-4,共4页
Objective: To study differentially expressed genes by silencing cyclin B1, and to sift out autophagy-related genes. Methods: Double thymidine deoxyribonucleoside blocking was used to synchronize nasopharyngeal carcino... Objective: To study differentially expressed genes by silencing cyclin B1, and to sift out autophagy-related genes. Methods: Double thymidine deoxyribonucleoside blocking was used to synchronize nasopharyngeal carcinoma cell (CNE-2) to S phase, then flow cytometry was applied to test transfection efficiency. The mRNA and protein expression level of cyclin B1 was assessed by q-PCR and western blot, respectively. Differentially expressed genes were screened by high-throughput gene chip. Results: Double thymidine deoxyribonucleoside (2.5 mmol/L) blocking was used to synchronize the cell cycle to S phase. The transfection efficiency of CNE-2 cells was 85.6%. Compared with negative group,cyclin B1-siRNA treated group significantly down-regulated mRNA expression of cyclin B1 (80%) and protein level (75.3%). Totally, 2408 differentially expressed genes were found in CNE-2, including 1245 up-regulated genes and 1163 down-regulated genes. Moreover, PTEN, an autophagy-related gene, was preliminarily sifted out. Conclusions: Cyclin B1-siRNA significantly down-regulated the expression of cyclin B1 and yielded a total of 2408 differentially expressed genes, including PETN (an autophagy-related gene). 展开更多
关键词 CYCLIN B1 Cell cycle synchronization high-throughput gene chip Autophagy-related gene
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基于基因富集的鸟类线粒体基因组快速获取方法研究
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作者 邱冰滢 陈雪瑶 +2 位作者 王辉 李晨虹 张东升 《生物技术进展》 2024年第4期618-630,共13页
动物线粒体基因常常被作为系统发育研究、环境DNA、物种鉴定的分子标记,如COX1、12S rRNA等,而不同学者使用的位点各不相同,导致参考数据库难以统一,而使用完整的线粒体基因组序列作为参考,可以很好地解决这个问题。建立本地物种的线粒... 动物线粒体基因常常被作为系统发育研究、环境DNA、物种鉴定的分子标记,如COX1、12S rRNA等,而不同学者使用的位点各不相同,导致参考数据库难以统一,而使用完整的线粒体基因组序列作为参考,可以很好地解决这个问题。建立本地物种的线粒体基因组数据库,对环境DNA研究尤为重要。根据鸟类线粒体基因组内10个保守位点开发了针对鸟类的线粒体基因组基因富集探针,利用该探针富集并组装、注释了17种共19只采集于上海地区的鸟类样本的线粒体基因组,在没有白腹鸫(Turdus pallidus)参考线粒体基因组的条件下组装获得了该物种的完整线粒体基因组。同时,针对白腹鸫样本“不富集,直接建库”和“先富集,后建库”两种方法的测序结果进行了对比,结果表明基因富集可以显著提高全基因组文库中线粒体DNA的占比;随后对两种方法的测序结果进行随机抽样,结果表明在约40000条序列(约0.012 G测序量)的极端情况下,富集后结果可达到约75%的覆盖度,而未富集的样本仅有约25%的覆盖度;在测序量约0.24 GB时,富集后的样本首次达到100%覆盖度。相对于传统使用引物逐段扩增获取线粒体基因组的方法,研究提出的RNA探针为获取鸟类线粒体基因组提供了更加高效、快捷的方法。 展开更多
关键词 线粒体基因组 鸟类 基因富集
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Kartagener综合征合并分泌性中耳炎患者的基因诊断 被引量:13
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作者 张静 白银 +5 位作者 尤少华 籍灵超 贾婧杰 邱昕 徐丛 王洪田 《中华耳科学杂志》 CSCD 北大核心 2014年第1期41-44,共4页
目的应用基因筛查技术进行kartagener综合征合并慢性分泌性中耳炎患者的基因诊断。方法将2010年1月至2013年12月就诊于解放军总医院耳鼻咽喉头颈外科的8例kartagener综合征合并慢性分泌性中耳炎患者作为研究对象。采集病史、绘制家系图... 目的应用基因筛查技术进行kartagener综合征合并慢性分泌性中耳炎患者的基因诊断。方法将2010年1月至2013年12月就诊于解放军总医院耳鼻咽喉头颈外科的8例kartagener综合征合并慢性分泌性中耳炎患者作为研究对象。采集病史、绘制家系图,进行纯音测听、声导纳检查;应用sanger测序进行热点基因筛查,并对1例患者及其父母应用全外显子组测序进行基因筛查,应用Pomol软件对候选基因编码蛋白进行3D-蛋白结构模拟。结果 8例患者均伴有慢性分泌性中耳炎。应用sanger测序进行热点基因筛查的患者,均未发现所筛查位点基因突变;应用全外显子组测序的1例患者发现c.8030G>A(p.R2677Q)突变,位于基因DNAH5。结论慢性分泌性中耳炎患者应考虑kartagener综合征的可能性,以免漏诊误诊,基因筛查为该病提供了分子遗传学诊断证据。 展开更多
关键词 KARTAgeneR综合征 原发性纤毛运动障碍 基因筛查 全外显子组测序 常染色体隐性遗传
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全反式维甲酸调控K562细胞红系分化的表观遗传机制
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作者 刘春亚 贾炳豪 +2 位作者 唐琴 孙元田 任立成 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2024年第10期1441-1452,共12页
全反式维甲酸(ATRA)是早幼粒细胞分化的有效诱导剂,其对红系分化过程的作用尚不完全清楚。为研究ATRA在红系分化进程中的作用及其表观遗传调控机制,本文以诱导白血病细胞K562向红系分化为模型,对ATRA干扰红系分化过程的调控机制进行研... 全反式维甲酸(ATRA)是早幼粒细胞分化的有效诱导剂,其对红系分化过程的作用尚不完全清楚。为研究ATRA在红系分化进程中的作用及其表观遗传调控机制,本文以诱导白血病细胞K562向红系分化为模型,对ATRA干扰红系分化过程的调控机制进行研究。首先利用血红素(he-min)诱导K562细胞向红系分化;流式细胞术结果显示,ATRA影响细胞向红系分化过程中的谱系变化,阻滞细胞分化进程;ATRA处理分化中的细胞后,红系分化相关基因表达水平降低;而通过3C、FAIRE和ChIP技术对其中的表观遗传机制进行探究发现,ATRA处理细胞后,β-珠蛋白家族基因座位内的染色质可及性降低,LCR与其靶基因启动子之间的相互作用频率降低;而基因座位染色质可及性降低导致了红系相关转录因子GATA1、LDB1、LMO2和TAL1在LCR及珠蛋白家族基因座位的启动子区的富集频率降低。上述结果表明,ATRA处理分化中的细胞导致红系分化相关基因的染色质可及性降低,更加封闭的染色质结构阻碍了LCR招募转录因子与基因启动子区的结合,进而抑制β-珠蛋白家族基因表达,这种动态的变化过程阐明了ATRA调控红系分化的表观遗传机制。 展开更多
关键词 全反式维甲酸 红系分化 染色质构象捕获 染色质免疫沉淀 基因表达调控
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Mechanism of Guangdong Shenqu in regulating intestinal flora in mice with food stagnation and internal heat based on 16S rDNA sequencing
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作者 Yani Jiang Zhenhong Zhang +5 位作者 Han Chen Yanmin Wang Yanrui Xu Zijie Chen Yan Xu Jingjuan Wang 《Journal of Traditional Chinese Medical Sciences》 CAS 2024年第2期232-244,共13页
Objective:To investigate the effect of Guangdong Shenqu(GSQ)on intestinal flora structure in mice with food stagnation through 16S rDNA sequencing.Methods: Mice were randomly assigned to control,model,GSQ low-dose(GSQ... Objective:To investigate the effect of Guangdong Shenqu(GSQ)on intestinal flora structure in mice with food stagnation through 16S rDNA sequencing.Methods: Mice were randomly assigned to control,model,GSQ low-dose(GSQL),GSQ medium-dose(GSQM),GSQ high-dose(GSQH),and lacidophilin tablets(LAB)groups,with each group containing 10 mice.A food stagnation and internal heat mouse model was established through intragastric administration of a mixture of beeswax and olive oil(1:15).The control group was administered normal saline,and the model group was administered beeswax and olive oil to maintain a state.The GSQL(2 g/kg),GSQM(4 g/kg),GSQH(8 g/kg),and LAB groups(0.625 g/kg)were administered corresponding drugs for 5 d.After administration,16S rDNA sequencing was performed to assess gut microbiota in mouse fecal samples.Results: The model group exhibited significant intestinal flora changes.Following GSQ administration,the abundance and diversity index of the intestinal flora increased significantly,the number of bacterial species was regulated,andαandβdiversity were improved.GSQ administration increased the abundance of probiotics,including Clostridia,Lachnospirales,and Lactobacillus,whereas the abundance of conditional pathogenic bacteria,such as Allobaculum,Erysipelotrichaceae,and Bacteroides decreased.Functional prediction analysis indicated that the pathogenesis of food stagnation and GSQ intervention were primarily associated with carbohydrate,lipid,and amino acid metabolism,among other metabolic pathways.Conclusion: The digestive mechanism of GSQ may be attributed to its role in restoring diversity and abundance within the intestinal flora,thereby improving the composition and structure of the intestinal flora in mice and subsequently influencing the regulation of metabolic pathways. 展开更多
关键词 Guangdong Shenqu Food stagnation Gut microbiota high-throughput gene sequencing Species annotation Metabolic pathway
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Diversity of bacterial lactase genes in intestinal contents of mice with antibiotics-induced diarrhea 被引量:9
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作者 Cheng-Xing Long Lu He +3 位作者 Yan-Fang Guo Ya-Wei Liu Nen-Qun Xiao Zhou-Jin Tan 《World Journal of Gastroenterology》 SCIE CAS 2017年第42期7584-7593,共10页
AIM To investigate the diversity of bacterial lactase genes in the intestinal contents of mice with antibiotics-induced diarrhea.METHODS Following 2 d of adaptive feeding, 12 specific pathogenfree Kunming mice were ra... AIM To investigate the diversity of bacterial lactase genes in the intestinal contents of mice with antibiotics-induced diarrhea.METHODS Following 2 d of adaptive feeding, 12 specific pathogenfree Kunming mice were randomly divided into the control group and model group. The mouse model of antibiotics-induced diarrhea was established by gastric perfusion with mixed antibiotics(23.33 m L·kg^(-1)·d^(-1)) composed of gentamicin sulfate and cephradine capsules administered for 5 days, and the control group was treated with an equal amount of sterile water. Contents of the jejunum and ileum were then collected and metagenomic DNA was extracted, after which analysis of bacterial lactase genes using operational taxonomic units(OTUs) was carried outafter amplification and sequencing.RESULTS OTUs were 871 and 963 in the model group and control group, respectively, and 690 of these were identical. There were significant differences in Chao1 and ACE indices between the two groups(P < 0.05). Principal component analysis, principal coordination analysis and nonmetric multidimensional scaling analyses showed that OTUs distribution in the control group was relatively intensive, and differences among individuals were small, while in the model group, they were widely dispersed and more diversified. Bacterial lactase genes from the intestinal contents of the control group were related to Proteobacteria, Actinobacteria, Firmicutes and unclassified bacteria. Of these, Proteobacteria was the most abundant phylum. In contrast, the bacterial population was less diverse and abundant in the model group, as the abundance of Bradyrhizobium sp. BTAi1, Agrobacterium sp. H13-3, Acidovorax sp. KKS102, Azoarcus sp. KH32 C and Aeromonas caviae was lower than that in the control group. In addition, of the known species, the control group and model group had their own unique genera, respectively.CONCLUSION Antibiotics reduce the diversity of bacterial lactase genes in the intestinal contents, decrease the abundance of lactase gene, change the lactase gene strains, and transform their structures. 展开更多
关键词 Antibiotics-induced diarrhea Lactase genes gene diversity Intestinal bacteria high-throughput sequencing
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Differential mRNA expression profiling of oral squamous cell carcinoma by high-throughput RNA sequencing 被引量:4
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作者 Liangyu Ge Siyu Liu +3 位作者 Long Xie Lei Sang Changyan Ma Hongwei Li 《The Journal of Biomedical Research》 CAS CSCD 2015年第5期397-404,共8页
Differentially expressed genes are thought to regulate the development and progression of oral squamous cell carcinomas (OSCC). The purpose of this study was to screen differentially expressed mRNAs in OSCC and matc... Differentially expressed genes are thought to regulate the development and progression of oral squamous cell carcinomas (OSCC). The purpose of this study was to screen differentially expressed mRNAs in OSCC and matched paraneoplastic normal tissues, and to explore the intrinsic mechanism of OSCC development and progres- sion. We obtained the differentially expressed mRNA expression profiles in 10 pairs of fresh-frozen OSCC tissue specimens and matched paraneoplastic normal tissue specimens by high-throughput RNA sequencing. By using Gene Ontology enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, the functional significance of the differentially expressed genes were analyzed. We identified 1,120 sig- nificantly up-regulated mRNAs and 178 significantly down-regulated mRNAs in OSCC, compared to normal tissue. The differentially expressed mRNAs were involved in 20 biological processes and 68 signal pathways. Compared to adjacent normal tissue, the expression of MAGEAll was up-regulated; TCHH was down-regulated. These find- ings were verified by real-time PCR. These differentially expressed mRNAs may function as oncogenes or tumor suppressors in the development and progression of OSCC. This study provides novel insights into OSCC. However, further work is needed to determine if these differentially expressed mRNAs have potential roles as diagnostic bio- markers and candidate therapeutic targets for OSCC. 展开更多
关键词 oral squamous cell carcinoma high-throughput RNA sequencing MRNA gene Ontology KEGG pathway
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Spatial distribution characteristics of bacterial community structure and gene abundance in sediments of the Bohai Sea 被引量:3
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作者 Quanrui Chen Jingfeng Fan +10 位作者 Jie Su Hongxia Ming Zhihao Sun Mengfei Li Xiaohui Zhao Yantao Wang Yingxue Zhang Huizhen Zhang Yuan Jin Xiaowan Ma Bin Wang 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2020年第2期69-78,共10页
This study investigated differences in the community structure and environmental responses of the bacterial community in sediments of the Bohai Sea.Illumina high-throughput sequencing technology and real-time PCR were... This study investigated differences in the community structure and environmental responses of the bacterial community in sediments of the Bohai Sea.Illumina high-throughput sequencing technology and real-time PCR were used to assay the bacterial 16S rRNA genes in the surface sediments of 13 sampling stations in the Bohai Sea.The results showed that sediments at the majority of the 13 sampling stations were contaminated by heavy metal mercury.The main phyla of bacteria recorded included Proteobacteria(52.92%),Bacteroidetes(11.76%),Planctomycetes(7.39%),Acidobacteria(6.53%)and Chloroflexi(4.97%).The genus with the highest relative abundance was Desulfobulbus(4.99%),which was the dominant genus at most sampling stations,followed by Lutimonas and Halioglobus.The main factors influencing bacterial community structure were total organic carbon,followed by depth and total phosphorus.The content of lead,cadmium,chromium,copper and zinc had a consistent effect on community structure.Arsenic showed a negative correlation with bacterial community structure in most samples,while the impact of mercury on community structure was not significant.The bacterial community in sediment samples from the Bohai Sea was rich in diversity and displayed an increase in diversity from high to low latitudes.The data indicated that the Bohai Sea had abundant microbial resources and was rich in bacteria with the potential to metabolize many types of pollutants. 展开更多
关键词 Bohai Sea SEDIMENTS bacterial community structure high-throughput sequencing 16S RRNA gene
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Altered Expression of Differential Genes in Thoracic Spinal Cord Involved in Experimental Cholestatic Itch Mouse Model 被引量:1
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作者 Ming CHEN Zhi-xiao LI +1 位作者 Qian WANG Hong-bing XIANG 《Current Medical Science》 SCIE CAS 2018年第4期679-683,共5页
The spinal origin of cholestatic itch in experimental obstructive jaundice mouse model remains poorly understood. In this study, the jaundice model was established by bile duct ligation (BDL) in mice, and differenti... The spinal origin of cholestatic itch in experimental obstructive jaundice mouse model remains poorly understood. In this study, the jaundice model was established by bile duct ligation (BDL) in mice, and differential gene expression patterns were analyzed in the lower thoracic spinal cord involved in cholestatic pruritus after BDL operation using high-throughput RNA sequencing. At 21st day after BDL, the expression levels of ENSRNOG00000060523, ENSRNOG00000058405 and ENSRNOG00000055193 mRNA were significantly up-regulated, and those of ENSRNOG00000042197, ENSRNOG00000008478, ENSRNOG00000019607, ENSRNOG00000020647, ENSRNOG00000046289, Gemin8, Serpina3n and Trim63 mRNA were significantly down-regulated in BDL group. The RNAseq data of selected mRNAs were validated by RT-qPCR. The expression levels of ENSRNOG00000042197, ENSRNOG00000008478, ENSRNOG00000019607, ENSRNOG00000020647, ENSRNOG00000046289 and Serpina3n mRNA were significantly down-regulated in BDL group. This study suggested that cholestatic pruritus in experimental obstructive jaundice mouse model is related with in the changes of gene expression profiles in spinal cord. 展开更多
关键词 cholestatic itch differential genes spinal cord high-throughput RNA sequencing
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A living cell-based fluorescent reporter for high-throughput screening of anti-tumor drugs
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作者 Ningning Tang Ling Li +5 位作者 Fei Xie Ying Lu Zifan Zuo Hao Shan Quan Zhang Lianwen Zhang 《Journal of Pharmaceutical Analysis》 SCIE CAS CSCD 2021年第6期808-814,共7页
Suppression of cellular O-linkedβ-N-acetylglucosaminylation(O-Glc NAcylation)can repress proliferation and migration of various cancer cells,which opens a new avenue for cancer therapy.Based on the regulation of insu... Suppression of cellular O-linkedβ-N-acetylglucosaminylation(O-Glc NAcylation)can repress proliferation and migration of various cancer cells,which opens a new avenue for cancer therapy.Based on the regulation of insulin gene transcription,we designed a cell-based fluorescent reporter capable of sensing cellular O-Glc NAcylation in HEK293 T cells.The fluorescent reporter mainly consists of a reporter(green fluorescent protein(GFP)),an internal reference(red fluorescent protein),and an operator(neuronal differentiation 1),which serves as a"sweet switch"to control GFP expression in response to cellular OGlc NAcylation changes.The fluorescent reporter can efficiently sense reduced levels of cellular OGlc NAcylation in several cell lines.Using the fluorescent reporter,we screened 120 natural products and obtained one compound,sesamin,which could markedly inhibit protein O-Glc NAcylation in He La and human colorectal carcinoma-116 cells and repress their migration in vitro.Altogether,the present study demonstrated the development of a novel strategy for anti-tumor drug screening,as well as for conducting gene transcription studies. 展开更多
关键词 Fluorescent reporter high-throughput screening O-linkedβ-N-acetylglucosaminylation Anti-tumor drug gene transcriptional regulation
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Screening and functional analysis of the long-range interaction elements ofβ-globin genes
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作者 XIAO Yi-shu XU Lan +4 位作者 LIU Chun-ya DU Le SUN Yuan-tian LI Dong-na REN Li-cheng 《Journal of Hainan Medical University》 2022年第24期1-7,共7页
Objective:Studies have shown thatβ-globin gene presents a selective expression transformation mechanism during development,and its upstream locus control region(LCR)regulates the expression pattern ofβ-globin gene f... Objective:Studies have shown thatβ-globin gene presents a selective expression transformation mechanism during development,and its upstream locus control region(LCR)regulates the expression pattern ofβ-globin gene family.To further explore the molecular network ofβ-globin gene expression regulation,other long-range regulatory elements that may be involved in the regulation ofβ-globin gene expression were screened and the dynamic regulation and transformation mechanism ofβ-globin gene was deeply studied.Methods:Promyelocytic cells were induced to differentiate by all-trans retinoic acid.β-globin gene promoter region and LCR were used as the target sites for circular chromosome conformational capture(4C)analysis.Through sequencing and regulatory element analysis,the sites interacting withβ-globin family loci were screened in the whole genome.Results:According to the results of 4C sequencing,the sites that interact with HBD promoter region and LCR were screened.Verified by chromosome conformational capture(3C),the results were consistent with those of sequencing.The functional analysis of regulatory elements by formaldehyde-assisted separation regulatory elements and Epiregio online website showed that the screening sites AC105129.4,AL354707.17,AC078785.22 and AC021646.35 were all potential regulatory elements involved inβ-globin gene.Conclusion:The interaction between 4C screening site and anchor site showed the complex spatial organization ofβ-globin family loci in the nucleus. 展开更多
关键词 β-Globin gene Circular chromosome conformation capture Chromatin interaction Chromosome conformation capture
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Genetic Susceptibility Study of Chinese Sudden Sensorineural Hearing Loss Patients with Vertigo
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作者 Yun GAO Hong-yang WANG +5 位作者 Jing GUAN Lan LAN Cui ZHAO Lin-yi XIE Da-yong WANG Qiu-ju WANG 《Current Medical Science》 2021年第4期673-679,共7页
Objective To investigate the genetic causes of sudden sensorineural hearing loss(SSNHL)patients in China.This study focused on analyzing variations of coding sequence of common genes related to deafness,revealing the ... Objective To investigate the genetic causes of sudden sensorineural hearing loss(SSNHL)patients in China.This study focused on analyzing variations of coding sequence of common genes related to deafness,revealing the molecular pathogenesis of sudden deafness from a genomics perspective,discovering molecular markers associated with the onset of deafness,and then supplying prevention to high-risk populations,classifying disease according to accurate etiology,and choosing a much more precision therapy.Methods We retrospectively analyzed the clinical characteristics of 51 patients diagnosed as SSNHL with vertigo treated in the Chinese PLA General Hospital.In this study,mutation screening of 307 nuclear genes and mitochondrial genome responsible for human or mouse deafness was performed on the 51 cases of unilateral sudden deafness patients with vertigo.Results We identified 51 cases of unilateral sudden deafness,including 2 cases of low-mid frequency hearing impairment,18 cases of mid-high frequency hearing loss,11 cases of flat-type hearing loss,and 20 cases of all frequency hearing loss.Among the 51 cases,8(15.69%)cases of GJB2 heterozygous variations,1(1.96%)case of GJB3 heterozygous variations,5(9.8%)cases of SLC26A4 heterozygous variations,2(3.92%)cases of COCH heterozygous variations,14(27.45%)cases of CDH23 heterozygous variations,14(27.45%)cases of OTOF heterozygous variations,1(1.96%)case of SLC17A8 heterozygous variations and 2(3.92%)cases of KCNE1 heterozygous variations.No mtDNA gene variations were identified.Conclusion SSNHL has some relationship with hereditary in Chinese population,but its complex genetic pathogenic mechanisms need further study. 展开更多
关键词 sudden sensorineural hearing loss targeted high-throughput sequencing VARIATION gene SUSCEPTIBILITY
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基于捕获法的靶向测序技术在弥漫大B细胞淋巴瘤IgH基因重排检测中的应用价值 被引量:1
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作者 李三恩 石晨曦 +2 位作者 朱卫东 王玉红 郭凌川 《临床与实验病理学杂志》 CAS 北大核心 2023年第3期317-320,共4页
目的探讨基于捕获法的靶向测序技术在弥漫大B细胞淋巴瘤IgH基因克隆性重排检测中的应用价值。方法收集2020年3月~2022年1月苏州大学附属第一医院送检的DLBCL标本99例,提取患者基因组DNA,使用基于捕获法的靶向测序技术进行IgH基因克隆性... 目的探讨基于捕获法的靶向测序技术在弥漫大B细胞淋巴瘤IgH基因克隆性重排检测中的应用价值。方法收集2020年3月~2022年1月苏州大学附属第一医院送检的DLBCL标本99例,提取患者基因组DNA,使用基于捕获法的靶向测序技术进行IgH基因克隆性重排检测。结果27.3%(27/99)患者检测到IgH基因完全IgHV-IgHD-IgHJ重排,50.5%(50/99)患者检测到IgH基因不完全IgHD-IgHJ重排,IgH基因克隆性重排联合检出率为66.7%(66/99)。27例患者检测到32种IgHV-IgHD-IgHJ重排,50例患者检测到52种IgHD-IgHJ重排,在IgHV-IgHD-IgHJ重排中,IgHV3、IgHD3和IgHJ4家族基因的取用频率最高,在IgHD-IgHJ重排中,IgHD3和IgHJ4家族基因的取用频率最高。3例患者捕获到未知IgH基因融合伴侣,其中2例为MIR4507-IgH融合,1例为IRF8-IgH融合。结论基于捕获法的靶向测序技术不仅可以检测IgH基因克隆性重排具体方式,还能发现IgH基因未知融合伴侣,对DLBCL诊断及个体化治疗策略制定具有重要意义。 展开更多
关键词 淋巴瘤 弥漫大B细胞淋巴瘤 捕获法 靶向测序 IGH基因重排
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Screening,preparation,and prototyping of metal–organic frameworks for adsorptive carbon capture under humid conditions 被引量:1
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作者 Long Jiang Jinyuan Yong +4 位作者 Renyu Xie Pengfei Xie Xuejun Zhang Zhijie Chen Zongbi Bao 《SusMat》 SCIE EI 2023年第5期609-638,共30页
Adsorption-based carbon capture has been recognized as an attractive method for mitigating global warming.Metal–organic frameworks(MOFs)are promising candidate adsorbents for this purpose due to their high adsorption... Adsorption-based carbon capture has been recognized as an attractive method for mitigating global warming.Metal–organic frameworks(MOFs)are promising candidate adsorbents for this purpose due to their high adsorption uptake and selectivity for carbon dioxide.However,in real-world applications,such as direct air capture,the presence of moisture in the feed gas may pose a grand challenge for CO_(2)adsorption in MOFs.This paper aims to address the issue of water–CO_(2)co-adsorption in MOFs and present screening criteria for selecting MOFs that preferentially adsorb CO_(2)under humid conditions.First,we uncover a comprehensive overview of CO_(2)–water co-adsorption characteristics of various MOFs.Then,the high-throughput screening methods are summarized.Both computational and experimental efforts have been dedicated to identify the promising MOFs for humid CO_(2)capture.According to the screening results and adsorption mechanism,the optimal preparation strategies are proposed tomodulate the effect of water on CO_(2)uptake in MOFs.Finally,current MOF-based CO_(2)capture prototypes are presented to evaluate their practical feasibility and performance.This work could offer valuable guidance for the development and application of MOFs for CO_(2)capture in the presence of water and inspire further research in this field. 展开更多
关键词 carbon capture CO_(2)adsorption high-throughput screening MOFS
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Chromosome-level genome assembly of Cylas formicarius provides insights into its adaptation and invasion mechanisms
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作者 HUA Jin-feng ZHANG Lei +6 位作者 HAN Yong-hua GOU Xiao-wan CHEN Tian-yuan HUANG Yong-mei LI Yan-qing MA Dai-fu LI Zong-yun 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第3期825-843,共19页
Cylasformicarius is one of the most important pests of sweet potato worldwide, causing considerable ecological and economic damage.This study improved the effect of comprehensive management and understanding of geneti... Cylasformicarius is one of the most important pests of sweet potato worldwide, causing considerable ecological and economic damage.This study improved the effect of comprehensive management and understanding of genetic mechanisms by examining the functional genomics of C. formicarius.Using Illumina and PacBio sequencing, this study obtained a chromosome-level genome assembly of adult weevils from lines inbred for 15 generations.The high-quality assembly obtained was 338.84 Mb, with contig and scaffold N50 values of 14.97 and 34.23 Mb, respectively.In total, 157.51 Mb of repeat sequences and 11 907 protein-coding genes were predicted.A total of 337.06 Mb of genomic sequences was located on the 11 chromosomes, accounting for 99.03%of the total length of the associated chromosome.Comparative genomic analysis showed that C. formicarius was sister to Dendroctonus ponderosae, and C. formicarius diverged from D. ponderosae approximately 138.89 million years ago (Mya).Many important gene families expanded in the C. formicarius genome were involved in the detoxification of pesticides, tolerance to cold stress and chemosensory system.To further study the role of odorant-binding proteins (OBPs) in olfactory recognition of C. formicarius, the binding assay results indicated that Cfor OBP4–6 had strong binding affinities for sex pheromones and other ligands.The high-quality C. formicarius genome provides a valuable resource to reveal the molecular ecological basis, genetic mechanism, and evolutionary process of major agricultural pests;it also offers new ideas and new technologies for ecologically sustainable pest control. 展开更多
关键词 Cylas formicarius PacBio sequencing high-through chromosome conformation capture chromosome-level genome chemosensory genes fluorescence competitive binding
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