Genetic relationship among Oxya chinensis populations and Oxya japonica populations collected from Xuzhou City, Jiangsu Province and Pingshan County, Hebei Province, China were analyzed by random amplified polymorphic...Genetic relationship among Oxya chinensis populations and Oxya japonica populations collected from Xuzhou City, Jiangsu Province and Pingshan County, Hebei Province, China were analyzed by random amplified polymorphic DNA （RAPD） markers. A total of 125 DNA bands ranging from 200 to 2 200 bp were amplified by 10 random primers in DNA samples from 43 grasshopper individuals. One hundred and twenty-three （99%） of these bands were polymorphic. Shannon＇s index showed that the genetic, diversity within O. chinensis （0.3432） was higher than that of O. japonica （0.2781）. Nei＇s genetic distance between O. chinensis population and O. japonica population from the same area was less than that between populations from two different areas. The dendrogram based on Nei＇s genetic distance of RAPD markers was constructed using the unweighted pair group method with the arithmetic average （UPGMA） and Neighbor-Joining （NJ） methods. Cluster analysis indicated that all the individuals were grouped into two main clusters. O. chinensis populations from Xuzhou and Pingshan formed one cluster, and O. japonica populations from the two regions belonged to another cluster. The results demonstrated that RAPD can detect within species, and among closely related species. polymorphisms to distinguish minor difference among individuals展开更多
In this study, 27 pairs of EST-SSR primers were employed to analyze the genetic diversity and genetic relationship of 100 wild tea plant germplasm re- sources and 22 cultivars, according to the results, a total of 88 ...In this study, 27 pairs of EST-SSR primers were employed to analyze the genetic diversity and genetic relationship of 100 wild tea plant germplasm re- sources and 22 cultivars, according to the results, a total of 88 polymorphic bands were amplified with 27 pairs of primers; the variation of effective alleles accounted for 69.01% ; a total of 183 genotypes were detected, with a variation range of 4 -11 ; averagely 6.78 genotypes were amplified with each primer pair; Shannon index （I） of 27 primer pairs ranged from 0.32 to I. 35, with an average of 0.88 ; the observed heterozygosity （0.52） was basically consistent with the expected het- erozygosity （0.52） ; the average polymorphism heterozygosity was 0.48, which was very close to 0.50 ; the average Nei＇s index was 0.51, which was higher than 0. 50 ; the average polymorphism information content （PIC） was 0.52, which was higher than 0.50, indicating high genetic diversity among wild tea germplasm resources in Yuunan Province. According to the clustering results, based on geographical origins and genetic backgrounds, 122 materials were clustered into 14 categories. Dendrogram based on Nei＇s genetic distance revealed complex genetic relationships among wild tea germplasm resources in Yunnan Province. This study provided certain reference for subsequent preservation, development and research of wild tea germplasm resources in China.展开更多
To further test the accuracy and rationality of the Chinese classification system for chrysanthemum(Chrysanthemum morifolium), 10 simple sequence repeat(SSR) markers were used to identify a collection of 88 chrysanthe...To further test the accuracy and rationality of the Chinese classification system for chrysanthemum(Chrysanthemum morifolium), 10 simple sequence repeat(SSR) markers were used to identify a collection of 88 chrysanthemum and its related genera accessions. In total, 42 effective alleles across 88 accessions were detected; 3 429 bands were obtained by PCR amplification, including 2 630 polymorphic bands. The similarity coefficient ranged from 0.53 to 0.88. Cluster analysis based on UPGMA illustrated that the wild species and large-flower cultivars were first divided into two clusters, then the large-flower cultivars formed five distinct groups according to petal type, indicated that petal type can be a classification criterion. In the wild species cluster, C. vestitum and C. zawadaskii grouped with A. trilobata, suggested that the Ajania genera was closely related to the Chrysanthemum genera. ‘Hangbaiju’, ‘Gongju’ and ‘Chuju’ were grouped together, and ‘Boju’, O. longilobus and C. mongolicum constituted another branch, showed a correlation with geographic region of origin. Population structure analysis was subsequently performed with K values ranging from 2 to 10, and the most likely estimate for the population structure is five subpopulations, which is nearly consistent with the clustering results. Principle component analysis was further performed to verify the classification results. The results showed that these SSR markers are very powerful for studying genetic relationships and will be useful tools in the identification and classification of chrysanthemum.展开更多
Genetic relationships among Prunus mume var. pendula were studied by using AFLP markers. 18 accessions representing 14 cultivars of Prunus mume var. pendula were selected from the germplasm collection at the Research ...Genetic relationships among Prunus mume var. pendula were studied by using AFLP markers. 18 accessions representing 14 cultivars of Prunus mume var. pendula were selected from the germplasm collection at the Research Center of China Mei Flower. Seven Mse I-EcoR I AFLP primer combinations revealed 450 legible bands, and 269 of which were polymorphic markers. A similarity matrix was prepared using the simple matching coefficient of similarity and Neis (72) distance coefficient. A UPGMA dendrogram demonstrated the genetic relationships of the cultivars. The information given by AFLP markers was basically consistent with the morphological classification and the evolutionary history of the morphotypes, and roughly supported the new revised classification system for Chinese Mei Cultivars. But there were still several exceptions: 1) the Guhong Chuizhi inserted between the Tiaoxue Chuizhi and the Danfen Chuizhi; 2) the Wufu Chuizhi kept off the Pink Pendant Form, and the Moshan Chuizhi was removed from Viridiflora Pendant Form; 3) the Danbi Chuizhi and the Shuangbi Chuizhi of Viridiflora Pendant Form got together well but fell within the Pink Pendant Form.展开更多
Guizhou black goat is the second-largest breed of goat in Guizhou, an important part of ecosystem of karst region. Constructing cladogTam of black goat and Guizhou local goat with molecular biological technique, we fo...Guizhou black goat is the second-largest breed of goat in Guizhou, an important part of ecosystem of karst region. Constructing cladogTam of black goat and Guizhou local goat with molecular biological technique, we found some functional genes related to reproduction and growth of black goat, such as FSHR, LHβ, GDF9, MSTN, POU1F1, GFI1B, etc. In view of the genetic relations between Guizhou black goat and other local goats, we reviewed the research status and progress of gene polymorphism of FSHR, LHβ,GDF9, MSTN, POU1F1, GFI1B, and prospected the research field of molecular properties of the breed resource.展开更多
To effectively conserve sour orange （Citrus aurantium L.） germplasm on two islands at the estuary of the Yangtze River in China, we estimated genetic variation and relationships of the known parental trees and their...To effectively conserve sour orange （Citrus aurantium L.） germplasm on two islands at the estuary of the Yangtze River in China, we estimated genetic variation and relationships of the known parental trees and their proposed descendents （young trees） using the fingerprints of random amplified polymorphic DNA （RAPD）. Results based on RAPD analyses showed considerable genetic diversity in the parental populations （He = 0.202）. The overall populations including the parental and young trees showed slightly higher genetic diversity （He = 0.298） than the parents, with about 10% variation between populations. An unweighted pair group method with arithmetic mean analysis dendrogram based on cluster analysis of the Jaccard similarity among individuals demonstrated a more complicated relationship of the parental and young trees from the two islands, although the young trees showed a clear association with parental trees. This indicates a significant contribution of parental trees in establishing the sour orange populations on the two islands. According to farmers＇ knowledge, conservation of only one or two parental trees would be sufficient because they believed that the whole populations were generated from a single mother tree. However, this study suggests that preserving most parental trees and some selected young trees with distant genetic relationships should be an effective conservation strategy for sour orange germplasm on the two islands.展开更多
目的比较似然比(likelihood ratio,LR)法和状态一致性(identity by state,IBS)法在半同胞关系鉴定中的应用价值,为制定半同胞鉴定相关规范提供参考。方法(1)基于相同的遗传标记组合,比较实际案例与计算机模拟案例的累计状态一致性评分(c...目的比较似然比(likelihood ratio,LR)法和状态一致性(identity by state,IBS)法在半同胞关系鉴定中的应用价值,为制定半同胞鉴定相关规范提供参考。方法(1)基于相同的遗传标记组合,比较实际案例与计算机模拟案例的累计状态一致性评分(cumulated identity by state score,CIBS)与累积全同胞关系指数分布,验证计算机模拟方法的可信度;(2)模拟获得全同胞、半同胞、无关个体对各100万对在不同数量的三种类型遗传标记上的分型,分别计算CIBS和相应类型的累积LR参数;(3)比较基于不同数据、不同种类的遗传标记、应用不同准确度标准区分上述三种关系个体对时,LR法和IBS法所能提供的最佳系统效能,以比较两种方法在上述鉴定中的应用价值;(4)根据已有模拟数据,以曲线拟合的方式估计应用不同类型遗传标记鉴别半同胞与另两种关系个体对所需的最低遗传标记数目。结果(1)经秩和检验,在真实关系和检验的遗传标记组合相同的前提下,模拟方法与实际案例所得结果差异无统计学意义;(2)多数情况下,在其他条件设置相同时,LR法的系统效能大于IBS法;(3)基于现有数据,可以通过曲线拟合的方式得到全-半同胞鉴定和半同胞鉴定在系统效能达到0.95或0.99时所需遗传标记的数目。结论在进行甄别全同胞对和半同胞对或甄别半同胞对和无关个体对的鉴定时,推荐优先使用LR法,并根据拟进行的鉴定类型和基于的人群数据估计所需遗传标记数目,以保证鉴定效果。展开更多
基金This work was supported by the National Natural Science Foundation of China （30470219, 30570247）Natural Science Foundation of Shanxi Province, China （991096）.
文摘Genetic relationship among Oxya chinensis populations and Oxya japonica populations collected from Xuzhou City, Jiangsu Province and Pingshan County, Hebei Province, China were analyzed by random amplified polymorphic DNA （RAPD） markers. A total of 125 DNA bands ranging from 200 to 2 200 bp were amplified by 10 random primers in DNA samples from 43 grasshopper individuals. One hundred and twenty-three （99%） of these bands were polymorphic. Shannon＇s index showed that the genetic, diversity within O. chinensis （0.3432） was higher than that of O. japonica （0.2781）. Nei＇s genetic distance between O. chinensis population and O. japonica population from the same area was less than that between populations from two different areas. The dendrogram based on Nei＇s genetic distance of RAPD markers was constructed using the unweighted pair group method with the arithmetic average （UPGMA） and Neighbor-Joining （NJ） methods. Cluster analysis indicated that all the individuals were grouped into two main clusters. O. chinensis populations from Xuzhou and Pingshan formed one cluster, and O. japonica populations from the two regions belonged to another cluster. The results demonstrated that RAPD can detect within species, and among closely related species. polymorphisms to distinguish minor difference among individuals
基金Supported by National Natural Science Foundation of China(31160175,31440034)Project for Protection and Utilization of Crop Germplasm Resources,Ministry of Agriculture(NB2012-2130135)+2 种基金Program of Technological Innovation Talents of Yunnan Province(2011CI068)Project for Construction of National Tea Modern Industrial Technology System of China(NYCYTX-23)Special Fund of Yunnan Academy of Agricultural Sciences(YAAS2012ZY002)
文摘In this study, 27 pairs of EST-SSR primers were employed to analyze the genetic diversity and genetic relationship of 100 wild tea plant germplasm re- sources and 22 cultivars, according to the results, a total of 88 polymorphic bands were amplified with 27 pairs of primers; the variation of effective alleles accounted for 69.01% ; a total of 183 genotypes were detected, with a variation range of 4 -11 ; averagely 6.78 genotypes were amplified with each primer pair; Shannon index （I） of 27 primer pairs ranged from 0.32 to I. 35, with an average of 0.88 ; the observed heterozygosity （0.52） was basically consistent with the expected het- erozygosity （0.52） ; the average polymorphism heterozygosity was 0.48, which was very close to 0.50 ; the average Nei＇s index was 0.51, which was higher than 0. 50 ; the average polymorphism information content （PIC） was 0.52, which was higher than 0.50, indicating high genetic diversity among wild tea germplasm resources in Yuunan Province. According to the clustering results, based on geographical origins and genetic backgrounds, 122 materials were clustered into 14 categories. Dendrogram based on Nei＇s genetic distance revealed complex genetic relationships among wild tea germplasm resources in Yunnan Province. This study provided certain reference for subsequent preservation, development and research of wild tea germplasm resources in China.
基金supported by The Project of Science and Technology of Beijing Academy of Agricultural and Forestry Sciences (KJCX20170108, KJCX20170203, JNKST201610)the Project of Beijing Municipal Science & Technology Commission (D161100001916004)
文摘To further test the accuracy and rationality of the Chinese classification system for chrysanthemum(Chrysanthemum morifolium), 10 simple sequence repeat(SSR) markers were used to identify a collection of 88 chrysanthemum and its related genera accessions. In total, 42 effective alleles across 88 accessions were detected; 3 429 bands were obtained by PCR amplification, including 2 630 polymorphic bands. The similarity coefficient ranged from 0.53 to 0.88. Cluster analysis based on UPGMA illustrated that the wild species and large-flower cultivars were first divided into two clusters, then the large-flower cultivars formed five distinct groups according to petal type, indicated that petal type can be a classification criterion. In the wild species cluster, C. vestitum and C. zawadaskii grouped with A. trilobata, suggested that the Ajania genera was closely related to the Chrysanthemum genera. ‘Hangbaiju’, ‘Gongju’ and ‘Chuju’ were grouped together, and ‘Boju’, O. longilobus and C. mongolicum constituted another branch, showed a correlation with geographic region of origin. Population structure analysis was subsequently performed with K values ranging from 2 to 10, and the most likely estimate for the population structure is five subpopulations, which is nearly consistent with the clustering results. Principle component analysis was further performed to verify the classification results. The results showed that these SSR markers are very powerful for studying genetic relationships and will be useful tools in the identification and classification of chrysanthemum.
基金the Natural Science Foundation of Hubei Province P. R. China (Grant No. 2001ABB118)
文摘Genetic relationships among Prunus mume var. pendula were studied by using AFLP markers. 18 accessions representing 14 cultivars of Prunus mume var. pendula were selected from the germplasm collection at the Research Center of China Mei Flower. Seven Mse I-EcoR I AFLP primer combinations revealed 450 legible bands, and 269 of which were polymorphic markers. A similarity matrix was prepared using the simple matching coefficient of similarity and Neis (72) distance coefficient. A UPGMA dendrogram demonstrated the genetic relationships of the cultivars. The information given by AFLP markers was basically consistent with the morphological classification and the evolutionary history of the morphotypes, and roughly supported the new revised classification system for Chinese Mei Cultivars. But there were still several exceptions: 1) the Guhong Chuizhi inserted between the Tiaoxue Chuizhi and the Danfen Chuizhi; 2) the Wufu Chuizhi kept off the Pink Pendant Form, and the Moshan Chuizhi was removed from Viridiflora Pendant Form; 3) the Danbi Chuizhi and the Shuangbi Chuizhi of Viridiflora Pendant Form got together well but fell within the Pink Pendant Form.
基金Supported by the National Transformation Fund for Agricultural Science and Technology Achievements(2012GB2F200408)Guizhou Agricultural Science and Technology Research(NY[2011]3064)+3 种基金Science and Technology Cooperation Program among Guizhou Science and Technology Agency,Bijie Government and Kunming Branch Chinese Academy of Sciences(2010-05)Guizhou High-level Personnel Research Conditions Special Assistant(TZJF-2010-034)Guizhou Agriculture Animal and Plant Breeding Special([2009]019)Guizhou Bijie Agricultural Science And Technology Research([2012]23)
文摘Guizhou black goat is the second-largest breed of goat in Guizhou, an important part of ecosystem of karst region. Constructing cladogTam of black goat and Guizhou local goat with molecular biological technique, we found some functional genes related to reproduction and growth of black goat, such as FSHR, LHβ, GDF9, MSTN, POU1F1, GFI1B, etc. In view of the genetic relations between Guizhou black goat and other local goats, we reviewed the research status and progress of gene polymorphism of FSHR, LHβ,GDF9, MSTN, POU1F1, GFI1B, and prospected the research field of molecular properties of the breed resource.
基金Supported by the Science and Technology Commission of Shanghai(043919319)the National Natural Science Foundation of China (30570988)the Youth Science and Technology Phosphor Foundation of Shanghai(05QMX1408).
文摘To effectively conserve sour orange （Citrus aurantium L.） germplasm on two islands at the estuary of the Yangtze River in China, we estimated genetic variation and relationships of the known parental trees and their proposed descendents （young trees） using the fingerprints of random amplified polymorphic DNA （RAPD）. Results based on RAPD analyses showed considerable genetic diversity in the parental populations （He = 0.202）. The overall populations including the parental and young trees showed slightly higher genetic diversity （He = 0.298） than the parents, with about 10% variation between populations. An unweighted pair group method with arithmetic mean analysis dendrogram based on cluster analysis of the Jaccard similarity among individuals demonstrated a more complicated relationship of the parental and young trees from the two islands, although the young trees showed a clear association with parental trees. This indicates a significant contribution of parental trees in establishing the sour orange populations on the two islands. According to farmers＇ knowledge, conservation of only one or two parental trees would be sufficient because they believed that the whole populations were generated from a single mother tree. However, this study suggests that preserving most parental trees and some selected young trees with distant genetic relationships should be an effective conservation strategy for sour orange germplasm on the two islands.
文摘目的比较似然比(likelihood ratio,LR)法和状态一致性(identity by state,IBS)法在半同胞关系鉴定中的应用价值,为制定半同胞鉴定相关规范提供参考。方法(1)基于相同的遗传标记组合,比较实际案例与计算机模拟案例的累计状态一致性评分(cumulated identity by state score,CIBS)与累积全同胞关系指数分布,验证计算机模拟方法的可信度;(2)模拟获得全同胞、半同胞、无关个体对各100万对在不同数量的三种类型遗传标记上的分型,分别计算CIBS和相应类型的累积LR参数;(3)比较基于不同数据、不同种类的遗传标记、应用不同准确度标准区分上述三种关系个体对时,LR法和IBS法所能提供的最佳系统效能,以比较两种方法在上述鉴定中的应用价值;(4)根据已有模拟数据,以曲线拟合的方式估计应用不同类型遗传标记鉴别半同胞与另两种关系个体对所需的最低遗传标记数目。结果(1)经秩和检验,在真实关系和检验的遗传标记组合相同的前提下,模拟方法与实际案例所得结果差异无统计学意义;(2)多数情况下,在其他条件设置相同时,LR法的系统效能大于IBS法;(3)基于现有数据,可以通过曲线拟合的方式得到全-半同胞鉴定和半同胞鉴定在系统效能达到0.95或0.99时所需遗传标记的数目。结论在进行甄别全同胞对和半同胞对或甄别半同胞对和无关个体对的鉴定时,推荐优先使用LR法,并根据拟进行的鉴定类型和基于的人群数据估计所需遗传标记数目,以保证鉴定效果。
