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Associations of genome-wide structural variations with phenotypic differences in cross-bred Eurasian pigs
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作者 Wencheng Zong Jinbu Wang +8 位作者 Runze Zhao Naiqi Niu Yanfang Su Ziping Hu Xin Liu Xinhua Hou Ligang Wang Lixian Wang Longchao Zhang 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第1期68-87,共20页
Background During approximately 10,000 years of domestication and selection,a large number of structural variations(SVs)have emerged in the genome of pig breeds,profoundly influencing their phenotypes and the ability ... Background During approximately 10,000 years of domestication and selection,a large number of structural variations(SVs)have emerged in the genome of pig breeds,profoundly influencing their phenotypes and the ability to adapt to the local environment.SVs(≥50 bp)are widely distributed in the genome,mainly in the form of insertion(INS),mobile element insertion(MEI),deletion(DEL),duplication(DUP),inversion(INV),and translocation(TRA).While studies have investigated the SVs in pig genomes,genome-wide association studies(GWAS)-based on SVs have been rarely conducted.Results Here,we obtained a high-quality SV map containing 123,151 SVs from 15 Large White and 15 Min pigs through integrating the power of several SV tools,with 53.95%of the SVs being reported for the first time.These high-quality SVs were used to recover the population genetic structure,confirming the accuracy of genotyping.Potential functional SV loci were then identified based on positional effects and breed stratification.Finally,GWAS were performed for 36 traits by genotyping the screened potential causal loci in the F2 population according to their corresponding genomic positions.We identified a large number of loci involved in 8 carcass traits and 6 skeletal traits on chromosome 7,with FKBP5 containing the most significant SV locus for almost all traits.In addition,we found several significant loci in intramuscular fat,abdominal circumference,heart weight,and liver weight,etc.Conclusions We constructed a high-quality SV map using high-coverage sequencing data and then analyzed them by performing GWAS for 25 carcass traits,7 skeletal traits,and 4 meat quality traits to determine that SVs may affect body size between European and Chinese pig breeds. 展开更多
关键词 Body size GWAS PIG SKELETON Structural variations
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Insights into genetic diversity and phenotypic variations in domestic geese through comprehensive population and pan-genome analysis
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作者 Guangliang Gao Hongmei Zhang +5 位作者 Jiangping Ni Xianzhi Zhao Keshan Zhang Jian Wang Xiangdong Kong Qigui Wang 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第1期88-107,共20页
Background Domestic goose breeds are descended from either the Swan goose(Anser cygnoides)or the Greylag goose(Anser anser),exhibiting variations in body size,reproductive performance,egg production,feather color,and ... Background Domestic goose breeds are descended from either the Swan goose(Anser cygnoides)or the Greylag goose(Anser anser),exhibiting variations in body size,reproductive performance,egg production,feather color,and other phenotypic traits.Constructing a pan-genome facilitates a thorough identification of genetic variations,thereby deepening our comprehension of the molecular mechanisms underlying genetic diversity and phenotypic variability.Results To comprehensively facilitate population genomic and pan-genomic analyses in geese,we embarked on the task of 659 geese whole genome resequencing data and compiling a database of 155 RNA-seq samples.By constructing the pan-genome for geese,we generated non-reference contigs totaling 612 Mb,unveiling a collection of 2,813 novel genes and pinpointing 15,567 core genes,1,324 softcore genes,2,734 shell genes,and 878 cloud genes in goose genomes.Furthermore,we detected an 81.97 Mb genomic region showing signs of genome selection,encompassing the TGFBR2 gene correlated with variations in body weight among geese.Genome-wide association studies utilizing single nucleotide polymorphisms(SNPs)and presence-absence variation revealed significant genomic associations with various goose meat quality,reproductive,and body composition traits.For instance,a gene encoding the SVEP1 protein was linked to carcass oblique length,and a distinct gene-CDS haplotype of the SVEP1 gene exhibited an association with carcass oblique length.Notably,the pan-genome analysis revealed enrichment of variable genes in the“hair follicle maturation”Gene Ontology term,potentially linked to the selection of feather-related traits in geese.A gene presence-absence variation analysis suggested a reduced frequency of genes associated with“regulation of heart contraction”in domesticated geese compared to their wild counterparts.Our study provided novel insights into gene expression features and functions by integrating gene expression patterns across multiple organs and tissues in geese and analyzing population variation.Conclusion This accomplishment originates from the discernment of a multitude of selection signals and candidate genes associated with a wide array of traits,thereby markedly enhancing our understanding of the processes underlying domestication and breeding in geese.Moreover,assembling the pan-genome for geese has yielded a comprehensive apprehension of the goose genome,establishing it as an indispensable asset poised to offer innovative viewpoints and make substantial contributions to future geese breeding initiatives. 展开更多
关键词 Gene-CDS haplotype Goose GWAS PAN-GENOME Presence-absence variation Selection signal
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Spatiotemporal variations,influencing factors,and configurational promotion paths of energy efficiency in China’s cities
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作者 Ruyu Xu Keliang Wang +1 位作者 Zhuang Miao Lingxuan Sun 《Chinese Journal of Population,Resources and Environment》 2024年第1期74-86,共13页
The promotion of energy efficiency(EE)helps address energy constraints and promote environmental sustainability.This study comprehensively explores the spatiotemporal variations,influencing factors,and configuration p... The promotion of energy efficiency(EE)helps address energy constraints and promote environmental sustainability.This study comprehensively explores the spatiotemporal variations,influencing factors,and configuration promotion paths of EE in 284 Chinese cities during 2003‒2019 using the global super-efficiency minimum distance to strong efficient frontier(G-S-MinDS),exploratory spatial data analysis(ESDA),multiscale geographically weighted regression(MGWR),and fuzzy set qualitative comparative analysis(fsQCA)methods.The findings are:①China’s cities have an annual average EE of 0.658 with a growth rate of 0.53%,showing considerable promotion potential.②Industrial structure optimization,population agglomeration,economic development,and increased green coverage contribute positively,while government intervention and openness hinder China’s urban EE.③Four configurational promotion paths for enhancing China’s urban EE are identified,where among those paths population density is a core condition,while government intervention is not.This study provides valuable insights into substantially improving urban EE,emphasizing the need for targeted policies to address energy and environmental crises in China. 展开更多
关键词 Energy efficiency Spatiotemporal variations Influencing factors Configurational promotion paths
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High Prevalence of Anatomical Variations and Anomalies of the CoronaryArteries Detected by CT Angiography in Symptomatic Patients
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作者 Ghazi A.Alshumrani 《Congenital Heart Disease》 SCIE 2024年第2期197-206,共10页
Objective:Coronary artery anatomical variations and anomalies are an important topic due to their potential clinical manifestations.This study aims to investigate the prevalence of coronary artery anatomical variation... Objective:Coronary artery anatomical variations and anomalies are an important topic due to their potential clinical manifestations.This study aims to investigate the prevalence of coronary artery anatomical variations and anomalies in symptomatic patients with coronary computed tomography angiography(CCTA).Methods:This is a retrospective study that included all symptomatic patients who had CCTA in a tertiary care hospital in Saudi Arabia during a period of seven years.Results:The total number of included patients was 507(60%males)with a mean age of 57.4 years.Approximately 41%had luminal stenoses,averaging 49.7%.The total num-ber of patients with coronary anatomical variations(CAV)and coronary artery anomalies(CAA)was 217(43%).CAV prevalence was 26%,which included 14%non-right coronary dominance,5%short left main coronary artery(LMCA),and 7%division variations(trifurcation and quadrifurcarion)of the LMCA.The prevalence of CAA was 29%,which included 5%origin anomalies,22%myocardial bridge,and 2%course anomalies.Conclusions:A high prevalence of coronary artery anatomic variations and anomalies in symptomatic patients is reported in this study.Systematic reviews,meta-analyses,reporting guidelines,and unified definitions and classifications of cor-onary variations and anomalies are lacking in the literature,presenting potential opportunities for future research and publications. 展开更多
关键词 Coronary artery anomalies coronary anatomical variation coronary CT angiography
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Spatiotemporal variations of parameters of internal solitary waves in the northern South China Sea
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作者 Yu’ang LIU Yifei JIANG +3 位作者 Xiaojiang ZHANG Zhiyuan WANG Yu CAO Huizan WANG 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第2期421-438,共18页
The dynamic parameters for internal solitary waves(ISWs)derived from the extended Korteweg-de Vries(eKdV)equation play an important role in the understanding and prediction of ISWs.The spatiotemporal variations of the... The dynamic parameters for internal solitary waves(ISWs)derived from the extended Korteweg-de Vries(eKdV)equation play an important role in the understanding and prediction of ISWs.The spatiotemporal variations of the dynamic parameters of the ISWs in the northern South China Sea(SCS)were studied based on the reanalysis of long-term temperature and salinity datasets.The results for spectrum analysis show that there are definite geographical differences for the periodic variation of the parameters:in shallow water,all parameters vary with a wave period of one year,while in deep water wave components of the parameters at other frequencies exist.Using wavelet analysis,the wavelet power spectral densities in deep water exhibited an inter-annual variation pattern.For example,the wave component of the dispersion coefficient with a wave period of about half a year reached its power peak once every two years.Based on previous work,this inter-annual variation pattern was deduced to be caused by dynamic processes.In further work on the regulatory mechanisms,empirical orthogonal function(EOF)decomposition was performed.It was found that the modes of the dispersion coefficient have different geographical distributions,explaining the reason why the wave components in different frequencies appeared in different locations.The numerical simulation results confirm that the variations in the parameters of the ISWs derived from the eKdV equation could affect the waveforms significantly because of changes in the polarity of the ISWs.Therefore,the periodic variations of the dynamic parameters are related to the geographical location because of dynamic processes operating. 展开更多
关键词 internal solitary waves(ISWs) dynamic parameters eKdV equation spatiotemporal variation polarity empirical orthogonal function(EOF)decomposition
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Relationship Between Gene-Phenotype and Clinical Manifestations of Chromosomal Copy Number Variations Indicated by Non-Invasive Prenatal Testing
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作者 Zixin Pi Xiaoyan Duan +1 位作者 Jing Peng Yanhui Liu 《Journal of Clinical and Nursing Research》 2024年第1期88-95,共8页
Objective:To analyze the clinical value of non-invasive prenatal testing(NIPT)in detecting chromosomal copy number variations(CNVs)and to explore the relationship between gene expression and clinical manifestations of... Objective:To analyze the clinical value of non-invasive prenatal testing(NIPT)in detecting chromosomal copy number variations(CNVs)and to explore the relationship between gene expression and clinical manifestations of chromosomal copy number variations.Methods:3551 naturally conceived singleton pregnant women who underwent NIPT were included in this study.The NIPT revealed abnormalities other than sex chromosome abnormalities and trisomy 13,18,and 21.Pregnant women with chromosome copy number variations underwent genetic counseling and prenatal ultrasound examination.Interventional prenatal diagnosis and chromosome microarray analysis(CMA)were performed.The clinical phenotypes and pregnancy outcomes of different prenatal diagnoses were analyzed.Additionally,a follow-up was conducted by telephone to track fetal development after birth,at six months,and one year post-birth.Results:A total of 53 cases among 3551 cases showed chromosomal copy number variation.Interventional prenatal diagnosis was performed in 36 cases:27 cases were negative and 8 were consistent with the NIPT test results.This indicates that NIPT’s positive predictive value(PPV)in CNVs is 22.22%.Conclusion:NIPT has certain clinical significance in screening chromosome copy number variations and is expected to become a routine screening for chromosomal microdeletions and microduplications.However,further interventional prenatal diagnosis is still needed to identify fetal CNVs. 展开更多
关键词 Non-invasive prenatal testing Chromosomal copy number variation Chromosomes 1 and 3 Chromosome 4 Chromosome 7 Chromosome 15 Prenatal diagnosis
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Recent advances and key opportunities on in-plane micro-supercapacitors:From functional microdevices to smart integrated microsystems 被引量:1
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作者 Jieqiong Qin Hongtao Zhang +4 位作者 Zhi Yang Xiao Wang Pratteek Das Feng Zhou Zhong-Shuai Wu 《Journal of Energy Chemistry》 SCIE EI CAS CSCD 2023年第6期410-431,I0010,共23页
The popularization of portable,implantable and wearable microelectronics has greatly stimulated the rapid development of high-power planar micro-supercapacitors(PMSCs).Particularly,the introduction of new functionalit... The popularization of portable,implantable and wearable microelectronics has greatly stimulated the rapid development of high-power planar micro-supercapacitors(PMSCs).Particularly,the introduction of new functionalities(e.g.,high voltage,flexibility,stretchability,self-healing,electrochromism and photo/thermal response)to PMSCs is essential for building multifunctional PMSCs and their smart selfpowered integrated microsystems.In this review,we summarized the latest advances in PMSCs from various functional microdevices to their smart integrated microsystems.Primarily,the functionalities of PMSCs are characterized by three major factors to emphasize their electrochemical behavior and unique scope of application.These include but are not limited to high-voltage outputs(realized through asymmetric configuration,novel electrolyte and modular integration),mechanical resilience that includes various feats of flexibility or stretchability,and response to stimuli(self-healing,electrochromic,photo-responsive,or thermal-responsive properties).Furthermore,three representative integrated microsystems including energy harvester-PMSC,PMSC-energy consumption,and all-in-one selfpowered microsystems are elaborately overviewed to understand the emerging intelligent interaction models.Finally,the key perspectives,challenges and opportunities of PMSCs for powering smart microelectronics are proposed in brief. 展开更多
关键词 Micro-supercapacitors in-plane Functionalization Integrated microsystem Energy storage
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Diversity on the Interannual Variations of Spring Monthly Precipitation in Southern China and the Associated Tropical Sea Surface Temperature Anomalies 被引量:1
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作者 郭如月 潘蔚娟 +2 位作者 柯敏玲 魏维 王子谦 《Journal of Tropical Meteorology》 SCIE 2023年第3期337-346,共10页
There is a continuous and relatively stable rainy period every spring in southern China(SC).This spring precipitation process is a unique weather and climate phenomenon in East Asia.Previously,the variation characteri... There is a continuous and relatively stable rainy period every spring in southern China(SC).This spring precipitation process is a unique weather and climate phenomenon in East Asia.Previously,the variation characteristics and associated mechanisms of this precipitation process have been mostly discussed from the perspective of seasonal mean.Based on the observed and reanalysis datasets from 1982 to 2021,this study investigates the diversity of the interannual variations of monthly precipitation in spring in SC,and focuses on the potential influence of the tropical sea surface temperature(SST)anomalies.The results show that the interannual variations of monthly precipitation in spring in SC have significant differences,and the correlations between each two months are very weak.All the interannual variations of precipitation in three months are related to a similar western North Pacific anomalous anticyclone(WNPAC),and the southwesterlies at the western flank of WNPAC bring abundant water vapor for the precipitation in SC.However,the WNPAC is influenced by tropical SST anomalies in different regions each month.The interannual variation of precipitation in March in SC is mainly influenced by the signal of El Nino-Southern Oscillation,and the associated SST anomalies in the equatorial central-eastern Pacific regulate the WNPAC through the Pacific-East Asia(PEA)teleconnection.In contrast,the WNPAC associated with the interannual variation of precipitation in April can be affected by the SST anomalies in the northwestern equatorial Pacific through a thermally induced Rossby wave response.The interannual variation of precipitation in May is regulated by the SST anomalies around the western Maritime Continent,which stimulates the development of low-level anomalous anticyclones over the South China Sea and east of the Philippine Sea by driving anomalous meridional vertical circulation. 展开更多
关键词 spring precipitation monthly diversity interannual variation southern China tropical sea surface temperature
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Recent advances in the in-plane shear testing of Mg alloy sheets
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作者 Mahesh Panchal Lalit Kaushik +3 位作者 Ravi K.R Rajesh Khatirkar Shi-Hoon Choi Jaiveer Singh 《Journal of Magnesium and Alloys》 SCIE EI CAS CSCD 2023年第2期405-424,共20页
Sheet-metal products are integral parts of engineering industries and academia research. Various testing techniques have revealed the deformation behaviors of sheet metals under complex stress states. Information obta... Sheet-metal products are integral parts of engineering industries and academia research. Various testing techniques have revealed the deformation behaviors of sheet metals under complex stress states. Information obtained from tensile and compression tests, however, are insufficient for the identification of material parameters relevant to modern constitutive laws, which require experimental setups capable of generating various loading conditions and applying great amounts of strain to sheet metals. In-plane shear testing has emerged as an important method to overcome the challenges associated with tension and compression tests and can provide additional information about deformation behaviors under large plastic strains. Materials such as Mg alloys with poor levels of both ductility and formability cannot accommodate large plastic strains. Therefore, tension and compression tests have limitations in explaining the material behaviors that occur during sheet metal forming where large plastic strains are introduced. Many studies have been conducted to explain the deformation behaviors of Mg alloys under shear deformation techniques. These include severe plastic deformation(SPD), especially the equal channel angular pressing(ECAP)and equal channel angular extrusion, rolling combined with shear deformation i.e. differential speed rolling(DSR), and also in-plane shear for sheet metals, particularly under large levels of plastic strain. These in-plane shear technique involves the Miyauchi shear test, ASTM shear test, and twin bridge shear tests. Moreover, many experimental results have revealed that the evolution of microstructure and texture during in-plane shear is closely related to the failure behavior of materials. Therefore, this review is focused on techniques for in-plane shear testing that have been reported thus far, on the effect of in-plane shear on the microstructure development of Mg alloy sheets, and on the usefulness of in-plane shear testing to evaluate the formability of Mg alloy sheets. 展开更多
关键词 Mg alloys in-plane shear TEXTURE FORMABILITY EBSD
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One-photo excitation pathway in 2D in-plane heterostructures for effective visible-light-driven photocatalytic degradation
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作者 Mengchi Liu Yiwen Cheng +4 位作者 Yuee Xie Yingcong Wei Jinhui Xing Yuanping Chen Jing Xu 《Journal of Semiconductors》 EI CAS CSCD 2023年第5期42-52,共11页
Broad-spectrum absorption and highly effective charge-carrier separation are two essential requirements to improve the photocatalytic performance of semiconductor-based photocatalysts.In this work,a fascinating one-ph... Broad-spectrum absorption and highly effective charge-carrier separation are two essential requirements to improve the photocatalytic performance of semiconductor-based photocatalysts.In this work,a fascinating one-photon system is reported by rationally fabricating 2D in-plane Bi_(2)O_(3)/BiOCl(i-Cl)heterostructures for efficient photocatalytic degradation of RhB and TC.Systematic investigations revealed that the matched band structure generated an internal electric field and a chemical bond connection between the Bi_(2)O_(3)and BiOCl in the Bi_(2)O_(3)/BiOCl composite that could effectively improve the utilization ratio of visible light and the separation effectivity of photo-generated carriers in space.The formed interactions at the 2D in-plane heterojunction interface induced the one-photon excitation pathway which has been confirmed by the experiment and DFT calculations.As a result,the i-Cl samples showed significantly enhanced photocatalytic efficiency towards the degradation of RhB and TC(RhB:0.106 min^(-1);TC:0.048 min^(-1))under visible light.The degradation activities of RhB and TC for i-Cl were 265.08 and 4.08times that of pure BiOCl,as well as 9.27 and 2.14 times that of mechanistically mixed Bi_(2)O_(3)/BiOCl samples,respectively.This work provides a logical strategy to construct other 2D in-plane heterojunctions with a one-photon excitation pathway with enhanced performance. 展开更多
关键词 photocatalysis CAU-17 Bismuth oxyhalides one-photon excitation pathway 2D in-plane heterojunction
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Quantitative Study of the Morphological Variations among Dzieduszyckia Populations from the Devonian Rongxian Formation,South China and their Influencing Factors
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作者 LI Tong DONG Lin +3 位作者 SUN Yuanlin YUAN Zhiwei NIE Ting LING Kun 《Acta Geologica Sinica(English Edition)》 SCIE CAS CSCD 2023年第6期1604-1615,共12页
The rhynchonellide brachiopod Dzieduszyckia Siemiradzki is widely distributed in the Lower Famennian strata,and exhibits a wide range of morphological variations among populations.1272 autochthonous Devonian Rongxian ... The rhynchonellide brachiopod Dzieduszyckia Siemiradzki is widely distributed in the Lower Famennian strata,and exhibits a wide range of morphological variations among populations.1272 autochthonous Devonian Rongxian Dzieduszyckia fossils were collected from three populations in South China,namely the Dazhai,Dalong,and Longmi sections.A series of quantitative morphological analyses were conducted to understand the morphological variation among populations and identify the triggers responsible for such variations.The results show that the Dazhai population differs significantly in morphospace from the Dalong and Longmi populations,while the latter two exhibit more similar morphological features,suggesting that geographic distribution may play a key role in affecting Dzieduszyckia morphology.The Longmi population shows a distinct morphospace from the Dazhai population and an overlapped morphospace with the Dalong population,indicating that habitat may not be the controlling factor.Lastly,the Dazhai and Dalong populations share some morphological similarities,but the Dazhai and Longmi populations occupy completely different morphospaces,indicating that evolution had a greater impact on phenotypic divergence than habitat.Our findings suggest that geographic distribution is the predominant factor influencing the morphological variation of Dzieduszyckia,while evolution and living habitat are less significant,the former of which might play a more important role. 展开更多
关键词 Dzieduszyckia morphological variation geographic distribution evolution HABITAT NMDS
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Methods of Variations and Their Applications
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作者 Arij A. Awin Ahlam A. Elasheq +1 位作者 Abdulmtalb M. Hussen Ali M. Awin 《Journal of Applied Mathematics and Physics》 2023年第5期1263-1286,共24页
In this review article, we begin with reviewing Calculus of variations giving few examples on its use to solve a large number of problems in geometry, physics, and other branches of knowledge. Afterwards, we direct ou... In this review article, we begin with reviewing Calculus of variations giving few examples on its use to solve a large number of problems in geometry, physics, and other branches of knowledge. Afterwards, we direct our attention to different methods of variations which evolved during the last century and which include their use in eigenvalue problems and in finite difference methods and those adopted in classical and quantum mechanics. The methods used in evaluating products and quotients of functionals are also discussed along with variational iteration methods. Later on, a good number of applications in different areas are presented and discussed;then a concluding discussion is given. 展开更多
关键词 variatION ITERATION CALCULUS Method APPLICATIONS Technique EXTREME
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Variations of extreme temperature in the Mount Qomolangma region in China during 1971-2020
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作者 WANG Shun-jiu 《Journal of Mountain Science》 SCIE CSCD 2023年第12期3488-3499,共12页
According to observational daily temperature data from the meteorological stations during 1971-2020,the variations of the extreme temperature event in the Mount Qomolangma(also known as Mount Everest) region in China ... According to observational daily temperature data from the meteorological stations during 1971-2020,the variations of the extreme temperature event in the Mount Qomolangma(also known as Mount Everest) region in China have been analyzed using statistical methods.The extreme temperature indices recommended by the World Meteorological Organization are selected to describe the extreme temperature event.The RClimDEX 1.0 software is used to calculate the extreme temperature indices.There are no tropical nights,and just three summer days at the last 50 years.The frost days are the main extreme temperature events all year round.The temperature in the north slope is more extreme than that in the south slope of the Mount Qomolangma.There is remarkable decadal variation for the extreme temperature indices except diurnal temperature range.There are the warm extremes increasing,however,the cold extremes decreasing with the decadal lapse,which is more remarkable into the 21^(th) century.The tendencies for the extreme temperature indices in the north slope are consistent with those in the south slope.There are statistically significant trends for most extreme temperature indices during the study period.It shows that the warm extremes would be more prominent in the future with the global continued warming.The abrupt changes of the extreme temperature index have occurred mainly in the 20^(th) century especially from the mid to late 1980s and 1990s.The periodic changes in the south slope do not synchronize those in the north slope for the most extreme temperature indices.It is different for most extreme temperature indices between the south and north slope,which has demonstrated that the regional or local changes are not neglectable for extreme temperature research.The results of this study are also the consistent response of extreme temperature event to the global warming. 展开更多
关键词 Extreme temperature variatION TREND Statistical analysis Mount Qomolangma Mount Everest
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Variations in chlorophyll content, stomatal conductance, and photosynthesis in Setaria EMS mutants
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作者 TANG Chan-juan LUO Ming-zhao +5 位作者 ZHANG Shuo JIA Guan-qing TANG Sha JIA Yan-chao ZHI Hui DIAO Xian-min 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第6期1618-1630,共13页
Chlorophyll (Chl) content,especially Chl b content,and stomatal conductance (G_s) are the key factors affecting the net photosynthetic rate (P_n).Setaria italica,a diploid C_4 panicoid species with a simple genome and... Chlorophyll (Chl) content,especially Chl b content,and stomatal conductance (G_s) are the key factors affecting the net photosynthetic rate (P_n).Setaria italica,a diploid C_4 panicoid species with a simple genome and high transformation efficiency,has been widely accepted as a model in photosynthesis and drought-tolerance research.The current study characterized Chl content,G_s,and P_n of 48 Setaria mutants induced by ethyl methanesulfonate.A total of 24,34,and 35 mutants had significant variations in Chl content,G_s,and P_n,respectively.Correlation analysis showed a positive correlation between increased G_s and increased P_n,and a weak correlation between decreased Chl b content and decreased P_n was also found.Remarkably,two mutants behaved with significantly decreased Chl b content but increased P_n compared to Yugu 1.Seven mutants behaved with significantly decreased G_s but did not decrease P_(n )compared to Yugu 1.The current study thus identified various genetic lines,further exploration of which would be beneficial to elucidate the relationship between Chl content,G_s,and P_n and the mechanism underlying why C_4 species are efficient at photosynthesis and water saving. 展开更多
关键词 photosynthetic capacity chlorophyll content stomatal conductance EMS mutant variation Setaria italica
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Spatial and Temporal Variations of Dissolved Inorganic Nutrients and Relationship with Phytoplankton Density in Coastal Water of Kudat, Sabah, Malaysia
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作者 Sujjat Al Azad Mezzy Rynee Romin Ejria Saleh 《Journal of Geoscience and Environment Protection》 2023年第12期229-240,共12页
Coastal areas of Kudat are dominated by fisheries activities. Development of infrastructure for fishing facilities like jetty, landing centre and other human activities can increase the loading of nutrients in coastal... Coastal areas of Kudat are dominated by fisheries activities. Development of infrastructure for fishing facilities like jetty, landing centre and other human activities can increase the loading of nutrients in coastal area. High load of nutrients accelerates the blooming of phytoplankton and in long run creates eutrophication. This study was conducted to determine the temporal and spatial variations of nutrients and relationship of phytoplankton density in coastal water of Kudat. Five stations were selected with three replicated in the study area. Phytoplankton samples, water samples and in situ environmental parameters were collected from May 2019 to February 2020 (10 months). The highest concentration of nitrate (NO<sub>3</sub>) was observed in May 2019, but the highest concentration of phosphate (PO<sub>4</sub>) observed in July 2019. On the other hand, higher concentrations of phosphate (PO<sub>4</sub>) were determined than the concentration of nitrate (NO<sub>3</sub>) in all stations during study period. The distribution of nutrients is due to monsoonal runoff from surrounding areas as well due to anthropogenic activities. Among the 21 species three of them are from harmful algal species and but dominated by diatoms. Poor relationship observed among the dissolved inorganic nutrients and phytoplankton density, indicates that the relationship does not depend on only nutrients but with favourable environmental parameters. Anthropogenic activity can lead to excessive load of nutrients in Kudat coastal water and in long run cause eutrophication problem in ecosystem with potentially larger economic impacts in a long run period. 展开更多
关键词 NITRATE PHOSPHATE Monthly variations Anthropogenic Activity and Kudat Coastal Water
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Interdecadal Variations of the March Atmospheric Heat Source over the Southeast Asian Low-Latitude Highlands
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作者 Dayong WEN Jie CAO 《Advances in Atmospheric Sciences》 SCIE CAS CSCD 2023年第9期1584-1596,共13页
Based on the fifth-generation reanalysis dataset from the European Centre for Medium-Range Weather Forecasts for 1979–2019,we investigated the effects of the circumglobal teleconnection(CGT)on the interdecadal variat... Based on the fifth-generation reanalysis dataset from the European Centre for Medium-Range Weather Forecasts for 1979–2019,we investigated the effects of the circumglobal teleconnection(CGT)on the interdecadal variation of the March atmospheric heat source(AHS)over the Southeast Asian low-latitude highlands(SEALLH).The dominant mode of the March AHS over the SEALLH features a monopole structure with an 8–11-year period.Decadal variations in the AHS make an important contribution to the 11-year low-pass filtered component of the AHS index,whichexplains 54.3%of the total variance.The CGT shows a clear interdecadal variation,which explains 59.3%of the total variance.The March AHS over the SEALLH is significantly related to the CGT on interdecadal timescales.When the CGT is optimally excited by a significant cyclonic vorticity source near northern Africa(i.e.,in its positive phase),the SEALLH is dominated by anomalous southerly winds and ascending motions on the east of the anomalous cyclone.The enhanced advection and upward transfer result in a high-enthalpy air mass that converges into and condenses over the SEALLH,leading to a largerthan-average March AHS over this region.The key physical processes revealed by this diagnostic analysis are supported by numerical experiments. 展开更多
关键词 interdecadal variation atmospheric heat source circumglobal teleconnection low-latitude highlands Rossby wave source
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Diel,seasonal,and annual variations of fish assemblages in intertidal creeks of the Changjiang River estuary
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作者 Jiayi FAN Jiasheng YANG +1 位作者 Yuanwen HE Xiaodong JIANG 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2023年第5期1849-1863,共15页
The use patterns of salt marsh habitats by fish assemblages were investigated in two welldeveloped intertidal creeks in the Changjiang(Yangtze)River estuary on spatial and temporal scales.Samples were collected using ... The use patterns of salt marsh habitats by fish assemblages were investigated in two welldeveloped intertidal creeks in the Changjiang(Yangtze)River estuary on spatial and temporal scales.Samples were collected using fyke nets at two sites during day and night in each season throughout four years.Notable changes in fish assemblages were detected over seasonal and interannual cycles,with many more marine species present in winter assemblages,whereas freshwater and estuarine species characterized the other seasonal samplings.The appearance of catadromous species in intertidal creeks mainly depended upon their specific physiological requirements,such as spawning migration.No significant diel shifts were observed in fish assemblages.This diel pattern may be a combined consequence of avian predation pressure and other drivers(i.e.,inherent living behaviors,food availability,and predation by piscivorous fishes).The spatial difference in fish community was insignificant even though the two intertidal creeks were different in size.Intertidal creeks with different size could possess similar ecological value for fish fauna.Redundancy analysis(RDA)showed that biological factors exerted greater effects on fish assemblages than physical variables.Temporal variations were strongly facilitated by food availability,but negatively impacted by avian predation.Salinity,water temperature,and river runoff had weak influence on temporal variations of fish communities.The lengthfrequency distribution showed that the fish collected in these two sites mainly consisted of young-of-year and juvenile fish,which confirmed that the creeks provided important nursery and forage roles in the process of fish ontogenetic development.Further,we proposed that salt marsh conservation management should be equally applied to all well-developed intertidal creeks regardless of creek size. 展开更多
关键词 FISH temporal variation intertidal creeks Changjiang(Yangtze)River estuary
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Seasonal variations in glacier velocity in the High Mountain Asia region during 2015–2020
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作者 ZHANG Zhen XU Yangyang +2 位作者 LIU Shiyin DING Jing ZHAO Jinbiao 《Journal of Arid Land》 SCIE CSCD 2023年第6期637-648,共12页
Velocity is an important component of glacier dynamics and directly reflects the response of glaciers to climate change.As a result,an accurate determination of seasonal variation in glacier velocity is very important... Velocity is an important component of glacier dynamics and directly reflects the response of glaciers to climate change.As a result,an accurate determination of seasonal variation in glacier velocity is very important in understanding the annual variation in glacier dynamics.However,few studies of glacier velocity in the High Mountain Asia(HMA)region were done.Along these lines,in this work,based on Sentinel-1 glacier velocity data,the distribution of glacier velocity in the HMA region was plotted and their seasonal variations during 2015-2020 were systematically analysed.The average glacier velocity in the HMA region was 0.053 m/d,and was positively correlated with the glacier area and slope.Glaciers in the Karakoram Mountains had the fastest average flow velocity(0.060 m/d),where the glaciers exhibited the largest average area and average slope.Moreover,glaciers in the GangdisêMountains had the slowest velocity(0.022 m/d)and the smallest average glacier area.The glacier flows were the fastest in spring(0.058 m/d),followed by summer(0.050 m/d),autumn(0.041 m/d),and winter(0.040 m/d).In addition,the glacier flows were the maximum in May,being 1.4 times of the annual average velocity.In some areas,such as the Qilian,Altun,Tibetan Interior,Eastern Kunlun,and Western Kunlun mountains,the peak glacier velocities appeared in June and July.The glacier velocity in the HMA region decreased in midsummer and reached the minimum in December when it was 75%of the annual average.These results highlight the role of meltwater in the seasonal variation in glacier flows in late spring and early summer.The seasonal velocity variation of lake-terminating glaciers was similar to that of land-terminating ones,but the former flowed faster.The velocity difference close to the mass balance line between the lake-and land-terminating glaciers was obviously greater in spring than in other seasons.In summer,the difference between the lake-and land-terminating glaciers at a normalized distance of 0.05-0.40 from the terminus was significantly greater than those of other seasons.The velocity difference between the lake-and land-terminating glaciers is closely related to the variable of ice thickness,and also to the frictional force of the terminal base reduced by proglacial lakes.Thus,it can be concluded that in addition to the variation of the glacier thickness and viscosity,the variation of glacier water input also plays a key role in the seasonal variation of glacier velocity. 展开更多
关键词 glacier velocity spatial-temporal variations High Mountain Asia synthetic aperture radar offset-tracking climate change
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Spatial-temporal variations and driving factors of soil organic carbon in forest ecosystems of Northeast China
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作者 Shuai Wang Bol Roland +4 位作者 Kabindra Adhikari Qianlai Zhuang Xinxin Jin Chunlan Han Fengkui Qian 《Forest Ecosystems》 SCIE CSCD 2023年第2期141-152,共12页
Forest soil carbon is a major carbon pool of terrestrial ecosystems,and accurate estimation of soil organic carbon(SOC)stocks in forest ecosystems is rather challenging.This study compared the prediction performance o... Forest soil carbon is a major carbon pool of terrestrial ecosystems,and accurate estimation of soil organic carbon(SOC)stocks in forest ecosystems is rather challenging.This study compared the prediction performance of three empirical model approaches namely,regression kriging(RK),multiple stepwise regression(MSR),random forest(RF),and boosted regression trees(BRT)to predict SOC stocks in Northeast China for 1990 and 2015.Furthermore,the spatial variation of SOC stocks and the main controlling environmental factors during the past 25 years were identified.A total of 82(in 1990)and 157(in 2015)topsoil(0–20 cm)samples with 12 environmental factors(soil property,climate,topography and biology)were selected for model construction.Randomly selected80%of the soil sample data were used to train the models and the other 20%data for model verification using mean absolute error,root mean square error,coefficient of determination and Lin's consistency correlation coefficient indices.We found BRT model as the best prediction model and it could explain 67%and 60%spatial variation of SOC stocks,in 1990,and 2015,respectively.Predicted maps of all models in both periods showed similar spatial distribution characteristics,with the lower SOC in northeast and higher SOC in southwest.Mean annual temperature and elevation were the key environmental factors influencing the spatial variation of SOC stock in both periods.SOC stocks were mainly stored under Cambosols,Gleyosols and Isohumosols,accounting for 95.6%(1990)and 95.9%(2015).Overall,SOC stocks increased by 471 Tg C during the past 25 years.Our study found that the BRT model employing common environmental factors was the most robust method for forest topsoil SOC stocks inventories.The spatial resolution of BRT model enabled us to pinpoint in which areas of Northeast China that new forest tree planting would be most effective for enhancing forest C stocks.Overall,our approach is likely to be useful in forestry management and ecological restoration at and beyond the regional scale. 展开更多
关键词 Soil organic carbon stocks Forest ecosystem Spatial-temporal variation Carbon sink Digital soil mapping
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Spatial and Temporal Stress Variations before and after the 2008 Wenchuan M_(w)7.9 Earthquake and its Implications:A Study based on Borehole Stress Data
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作者 MENG Wen LIN Weiren +1 位作者 CHEN Qunce LI Yonghua 《Acta Geologica Sinica(English Edition)》 SCIE CAS CSCD 2023年第1期226-242,共17页
In situ stress measurement data was analyzed to estimate the temporal and spatial stress variations at shallow depths in the Longmenshan fault zone(LMSF),prior to and following the 2008 Wenchuan earthquake(WCEQ).Analy... In situ stress measurement data was analyzed to estimate the temporal and spatial stress variations at shallow depths in the Longmenshan fault zone(LMSF),prior to and following the 2008 Wenchuan earthquake(WCEQ).Analysis of the stress field related to fault strength and behavior is useful for understanding geodynamic processes and conducting hazard assessments.The shallow stress changes after the WCEQ show clear along-strike variations.Degrees of stress orientation rotations have a negative correlation with the horizontal principal stress ratios and the WCEQ apparently reduced the magnitude difference between horizontal principal stresses.Taking stress magnitudes and orientation distribution relative to the fault strike into account,we propose an intermediate-strength of LMSF,with a friction coefficient generally constrained between 0.35 and 0.6.In addition,high-pressure fluids in the fault zone reduce the effective normal stress and to a certain degree weaken the fault strength.The accumulated stress over a certain period following release of the WCEQ indicates the start of another earthquake cycle.The changing crustal stress field makes the LMSF stable or slipping optimally during geodynamic processes.The segmentation feature of the shallow crustal stress field in the LMSF may imply a different tectonic loading and seismic release processes along the fault.The southwestern section to the epicenter of the WCEQ favors the occurrence of future earthquakes,as highμm in a state of critical failure was present in this area,which indicates that the Wenchuan and Lushan earthquakes did not release the accumulated stress to a sufficient extent there. 展开更多
关键词 stress variation in situ stress measurement fault strength hazard assessment Longmenshan fault zone
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