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Computational Analysis of Signal Peptide-Dependent Secreted Proteins in Saccharomyces cerevisiae 被引量:3
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作者 YANG Jing LI Cheng-yun +6 位作者 WANG Yun-yue ZHU You-yong LI Jin-bin HE Xia-hong ZHOU Xiao-gang LIU Lin YE Yan-fen 《Agricultural Sciences in China》 CAS CSCD 2006年第3期221-227,共7页
Computer based software such as the SignalP v3.0, TargetP v1.01, big-PI predictor and TMHMM v2.0 were combined to predict the signal peptides, and the signal peptide-dependent secreted proteins among the 6 700 ORFs in... Computer based software such as the SignalP v3.0, TargetP v1.01, big-PI predictor and TMHMM v2.0 were combined to predict the signal peptides, and the signal peptide-dependent secreted proteins among the 6 700 ORFs in genome of Saccharomyces cerevisiae. The results showed that 163 proteins were the secreted ones containing signal peptides, and they were secreted via Sec pathway. Among the 163 predicted secreted proteins, the signal peptides of 47 secreted proteins included only the H-domain and C-domain, without N-domain, but the signal peptides of other 116 secreted proteins included all the three domains. There were differences in the constitution of signal peptides between the secreted proteins of S. cerevisiae and of Candida albicans, but the length and amino acids types of their signal peptides were similar in general. Few of the same signal peptides occurred in the secreted proteins of S. cerevisiae genome, and the homology could be compared among the secreted proteins with the same signal peptides. The BLAST 2 SEQUENECES and CLUSTAL W were used to align the two protein sequences and multi-protein sequences, respectively. The alignment result indicated that homology of these sequences with the same signal peptide was very highly conservative in amino acid of complete gene. The effect of the signal peptides in S. cerevisia on expression of foreign eukaryotic secreted proteins is discussed in this paper. 展开更多
关键词 Saccharomyces cerevisia secreted protein signal peptide secretory pathway
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Physiological effects of amyloid precursor protein and its derivatives on neural stem cell biology and signaling pathways involved 被引量:3
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作者 Raquel Coronel Charlotte Palmer +4 位作者 Adela Bernabeu-Zornoza María Monteagudo Andreea Rosca Alberto Zambrano Isabel Liste 《Neural Regeneration Research》 SCIE CAS CSCD 2019年第10期1661-1671,共11页
The pathological implication of amyloid precursor protein(APP)in Alzheimer’s disease has been widely documented due to its involvement in the generation of amyloid-β peptide.However,the physiological functions of AP... The pathological implication of amyloid precursor protein(APP)in Alzheimer’s disease has been widely documented due to its involvement in the generation of amyloid-β peptide.However,the physiological functions of APP are still poorly understood.APP is considered a multimodal protein due to its role in a wide variety of processes,both in the embryo and in the adult brain.Specifically,APP seems to play a key role in the proliferation,differentiation and maturation of neural stem cells.In addition,APP can be processed through two canonical processing pathways,generating different functionally active fragments:soluble APP-α,soluble APP-β,amyloid-β peptide and the APP intracellular C-terminal domain.These fragments also appear to modulate various functions in neural stem cells,including the processes of proliferation,neurogenesis,gliogenesis or cell death.However,the molecular mechanisms involved in these effects are still unclear.In this review,we summarize the physiological functions of APP and its main proteolytic derivatives in neural stem cells,as well as the possible signaling pathways that could be implicated in these effects.The knowledge of these functions and signaling pathways involved in the onset or during the development of Alzheimer’s disease is essential to advance the understanding of the pathogenesis of Alzheimer’s disease,and in the search for potential therapeutic targets. 展开更多
关键词 AMYLOID precursor protein APP SOLUBLE APP alpha SOLUBLE APP BETA AMYLOID BETA peptide APP intracellular domain NEURAL stem CELLS NEURAL progenitor CELLS neurogenesis signaling pathways
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Computer-Assisted analysis of subcellular localization signals and post-translational modifications of human prion proteins
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作者 Fatemeh Moosawi Hassan Mohabatkar 《Journal of Biomedical Science and Engineering》 2009年第1期70-75,共6页
In the present work, computational analyses were applied to study the subcellular localiza-tion and posttranslational modifications of hu-man prion proteins (PrPs). The tentative location of prion protein was determin... In the present work, computational analyses were applied to study the subcellular localiza-tion and posttranslational modifications of hu-man prion proteins (PrPs). The tentative location of prion protein was determined to be in the nu-cleolus inside the nucleus by the following bio-informatics tools: Hum-PLoc, Euk-PLoc and Nuc-PLoc. Based on our results signal peptides with average of 22 base pairs in N-terminal were identified in human PrPs. This theoretical study demonstrates that PrP is post-translationally modified by: 1) attachment of two N-linked complex carbohydrate moieties (N181 and N197), 2) attachmet of glycosylphosphatidylinositol (GPI) at serine 230 and 3) formation of two di-sulfide bonds between “6–22” and “179–214” cysteines. Furthermore, ten protein kinase phosphorylation sites were predicted in human PrP. The above-noted phosphorylation was car-ried out by PKC and CK2. By using bioinfor-matics tools, we have shown that computation-ally human PrPs locate particularly into the nu-cleolus. 展开更多
关键词 PRION protein SUBCELLULAR localization signal peptides POST-TRANSLATIONAL Modifications BIOINFORMATICS
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An Improved Approach for Rapidly Identifying Different Types of Gram-Negative Bacterial Secreted Proteins 被引量:2
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作者 Lezheng Yu Fengjuan Liu +1 位作者 Lixiao Du Yizhou Li 《Natural Science》 2018年第5期168-177,共10页
Protein secretion plays an important role in bacterial lifestyles. In Gram-negative bacteria, a wide range of proteins are secreted to modulate the interactions of bacteria with their environments and other bacteria v... Protein secretion plays an important role in bacterial lifestyles. In Gram-negative bacteria, a wide range of proteins are secreted to modulate the interactions of bacteria with their environments and other bacteria via various secretion systems. These proteins are essential for the virulence of bacteria, so it is crucial to study them for the pathogenesis of diseases and the development of drugs. Using amino acid composition (AAC), position-specific scoring matrix (PSSM) and N-terminal signal peptides, two different substitution models are firstly constructed to transform protein sequences into numerical vectors. Then, based on support vector machine (SVM) and the “one to one”?algorithm, a hybrid multi-classifier named SecretP v.2.2 is proposed to rapidly and accurately?distinguish different types of Gram-negative?bacterial secreted proteins. When performed on the same test set for a comparison with other methods, SecretP v.2.2 gets the highest total sensitivity of 93.60%. A public independent dataset is used to further test the power of SecretP v.2.2 for predicting NCSPs, it also yields satisfactory results. 展开更多
关键词 GRAM-NEGATIVE Bacteria SECRETED protein Position-Specific SCORING Matrix signal peptide Support Vector Machine
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Isolation and characterization of novel peptides from fermented products of Lactobacillus for ulcerative colitis prevention and treatment 被引量:2
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作者 Dong He Wen Zeng +6 位作者 Yi Wang Yifan Xing Kang Xiong Nan Su Chong Zhang Yuan Lu Xinhui Xing 《Food Science and Human Wellness》 SCIE 2022年第6期1464-1474,共11页
Ulcerative colitis(UC)is an incurable and highly complex digestive disease affecting millions of people worldwide.Compared to the current therapeutic drugs,bioactive peptides are more promising and safe substances as ... Ulcerative colitis(UC)is an incurable and highly complex digestive disease affecting millions of people worldwide.Compared to the current therapeutic drugs,bioactive peptides are more promising and safe substances as functional foods or drugs for the prevention and treatment of UC.The alcohol-soluble components from fermentation broth by fresh wheat germ and apple(AC-WGAF)were found to be effective in UC prevention in dextran sulfate sodium-induced mice in vivo.Herein,4 novel peptides are identifi ed from AC-WGAF by membrane ultrafi ltration,recycling preparative high-performance liquid chromatography,and matrix-assisted laser desorption–ionization time-of-fl ight/time-of-fl ight mass spectrometry,possessing anticolitis activity via using an in vitro model.One of those peptides named T24(PVLGPVRGPFPLL)exhibited the most remarkable anti-colitis activity by preventing tight junction protein loss,maintaining epithelial barrier integrity,and promoting cell proliferation during in vitro and in vivo studies by regulating mitogen-activated protein kinase signaling pathways.Thus,T24 is a promising peptide as a functional food or novel drug for UC prevention and treatment. 展开更多
关键词 Ulcerative colitis peptide Fermentation product Intestinal epithelial barrier Cell proliferation Mitogen-activated protein kinase signaling pathways
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Host-targeting-motif Harbored Secretary Proteins in Genome of Plant Pathogenic Fungus Botrytis cinerea 被引量:1
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作者 Zhang Yue Chen Zi-niu +1 位作者 Su Yuan Yu Lei 《Journal of Northeast Agricultural University(English Edition)》 CAS 2012年第1期42-49,共8页
According to our previous study, saprophytic fungi Botrytis cinerea contained 579 predicted secretary proteins. Among them, we found that 122 of these proteins contained the highly conserved pathogenic-related host-ta... According to our previous study, saprophytic fungi Botrytis cinerea contained 579 predicted secretary proteins. Among them, we found that 122 of these proteins contained the highly conserved pathogenic-related host-targeting-motif RxLx within 100 residues adjacent to the signal peptide cleavage site. According to PEDNAT and COG of the GenBank database, the functions of this motif containing proteins included metabolism modification and cell secretion. We blasted them in GenBank and found 47.54% had highly conserved homologues in other species, among them 74.1% had putative functional domains. This suggests these proteins are presumably ancient and vertically transmitted within the species. Many of these domains belonged to proteins which played roles in the pathogenic process of other kinds of pathogens and some had already been proved to be pathogenic secretary proteins of Botrytis cinerea. So we postulated that proteins contained host-targeting-motif RxLx were candidates participating in the pathogenesis of Botrytis cinerea. 展开更多
关键词 Botrytis cinerea signal peptide secretary protein host-targeting-motif
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The promoting molecular mechanism of alphafetoprotein on the growth of human hepatoma Bel7402 cell line 被引量:59
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作者 LiMS LiPF 《World Journal of Gastroenterology》 SCIE CAS CSCD 2002年第3期469-475,共7页
AIM: The goal of this study was to characterize the AFP receptor, its possible signal transduction pathway and its proliferative functions in human hepatoma cell line Bel 7402. METHODS: Cell proliferation enhanced by ... AIM: The goal of this study was to characterize the AFP receptor, its possible signal transduction pathway and its proliferative functions in human hepatoma cell line Bel 7402. METHODS: Cell proliferation enhanced by AFP was detected by MTT assay, 3H-thymidine incorporation and S-stage percentage of cell cycle analysis. With radioactive labeled 125I-AFP for receptor binding assay; cAMP accumulation, protein kinase A activity were detected by radioactive immunosorbent assay and the change of intracellular free calcium (Ca2+i) was monitored by scanning fluorescence intensity under TCS-NT confocal microscope. The expression of oncogenes N- ras, p 53, and p21( ras ) in the cultured cells in vitro were detected by Northern blotting and Western blotting respectively. RESULTS: It was demonstrated that AFP enhanced the proliferation of human hepatoma Bel 7402 cell in a dose dependent fashion as shown in MTT assay, (3)H-thymidine incorporation and S-phase percentage up to 2-fold. Two subtypes of AFP receptors were identified in the cells with Kds of 1.3 x 10(-9)mol.L(-1) and 9.9 x10(-8)mol. (-1)L respectively. Pretreatment of cells with AFP resulted in a significant increase (625%) in cAMP accumulation. The activity of protein kinase A activity were increased up to 37.5, 122.6, 73.7 and 61.2% at treatment time point 2, 6, 12 and 24 hours. The level of intracellular calcium were elevated after the treatment of alpha-fetoprotein and achieved to 204% at 4 min. The results also showed that AFP(20mg.L(-1)) could upregulate the expression of N- ras oncogenes and p 53 and p21( ras ) in Bel 7402 cells. In the later case,the alteration were 81.1%(12h) and 97.3%(12h) respectively compared with control. CONCLUSION: These results demonstrate that AFP is a potential growth factor to promote the proliferation of human hepatoma Bel 7402 cells. Its growth-regulatory effects are mediated by its specific plasma membrane receptors coupled with its transmembrane signaling transduction through the pathway of cAMP-PKA and intracellular calcium to regulate the expression of oncogenes. 展开更多
关键词 Calcium Carcinoma Hepatocellular Cell Division Cyclic AMP Cyclic AMP-Dependent protein Kinases Humans Liver Neoplasms Receptors peptide Research Support Non-U.S. Gov't signal Transduction Tumor Cells Cultured ALPHA-FETOproteins
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The intracellular mechanism of alpha-fetoprotein promoting the proliferation of NIH 3T3 cells 被引量:27
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作者 MENG SEN LI, PING FENG LI, FBI YI YANG, SHI PENG HE, Guo GUANG DU, GANG LI1 Department of Biochemistry and Molecular Biology, 2 Department of Biophysics, Health Science Center, Peking University, Beijing 100083, China 《Cell Research》 SCIE CAS CSCD 2002年第2期151-156,共6页
AIM: The existence and properties of alpha-fetoprotein (AFP) receptor on the surface of NIH 3T3 cells and the effects of AFP on cellular signal transduction pathway were investigated. METHODS: The effect of AFP on the... AIM: The existence and properties of alpha-fetoprotein (AFP) receptor on the surface of NIH 3T3 cells and the effects of AFP on cellular signal transduction pathway were investigated. METHODS: The effect of AFP on the proliferation of NIH 3T3 cells was measured by incorporation of 3H-TdR. Receptor-binding assay of 125I-AFP was performed to detect the properties of AFP receptor in NIH 3T3 cells. The influences of AFP on the [cAMP]i and the activities of protein kinase A (PKA) were determined. Western blot was used to detect the change of K-ras P21 protein expression. RESULTS: The proliferation of NIH 3T3 cells treated with 0-80 mg/L of AFP was significantly enhanced. The Scatchard analysis indicated that there were two classes of binding sites with KD of 2.722 x 10(-9)M (Bmax=12810 sites per cell) and 8.931 x 10(-8)M (Bmax=119700 sites per cell) respectively. In the presence of AFP (20 mg/L), the content of cAMP and activities of PKA were significantly elevated . The level of K-ras P21 protein was upregulated by AFP at the concentration of 20 mg/L. The monoclonal antibody against AFP could reverse the effects of AFP on the cAMP content, PKA activity and the expression of K-ras p21 gene. CONCLUSION: The effect of AFP on the cell proliferation was achieved by binding its receptor to trigger the signal transduction pathway of cAMP-PKA and alter the expression of K- ras p21 gene. 展开更多
关键词 3T3 Cells Animals Cell Division Cyclic AMP Cyclic AMP-Dependent protein Kinases Dose-Response Relationship Drug Humans Mice Receptors peptide Research Support Non-U.S. Gov't signal Transduction Time Factors ALPHA-FETOproteins
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血清SCUBE1、Lp-PLA2水平与急性STEMI患者冠状动脉高血栓负荷的关系
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作者 赵景宏 乔彦 +2 位作者 张荣驿 邓建平 胡济麟 《山东医药》 CAS 2024年第7期33-37,共5页
目的探讨血清可溶性信号肽-CUB-表皮生长因子样结构域蛋白1(SCUBE1)、脂蛋白磷脂酶A2(Lp-PLA2)与急性ST段抬高型心肌梗死(STEMI)患者冠状动脉高血栓负荷(HTB)的关系。方法选取126例急性STEMI患者(急性STEMI组),根据血栓分级分为HTB患者5... 目的探讨血清可溶性信号肽-CUB-表皮生长因子样结构域蛋白1(SCUBE1)、脂蛋白磷脂酶A2(Lp-PLA2)与急性ST段抬高型心肌梗死(STEMI)患者冠状动脉高血栓负荷(HTB)的关系。方法选取126例急性STEMI患者(急性STEMI组),根据血栓分级分为HTB患者57例和非HTB患者69例;另选取87名健康体检者为对照组。用酶联免疫吸附法检测血清SCUBE1、Lp-PLA2;用多因素Logistic回归分析急性STEMI患者冠状动脉HTB的影响因素;用受试者工作特征(ROC)曲线评估血清SCUBE1、Lp-PLA2水平对急性STEMI患者冠状动脉HTB的预测价值。结果急性STEMI组血清SCUBE1、Lp-PLA2水平高于对照组(P均<0.05)。HTB患者年龄、吸烟比例、低密度脂蛋白胆固醇、白细胞计数、SCUBE1、Lp-PLA2水平高于非HTB患者(P均<0.05),两者性别、基础疾病、罪犯血管、Gensini评分、左室射血分数比较差异无统计学意义(P均>0.05)。多因素Logistic回归分析显示,年龄增加、吸烟和血清SCUBE1、Lp-PLA2水平升高为急性STEMI患者冠状动脉HTB的独立危险因素(P均<0.05)。ROC曲线分析显示,血清SCUBE1、Lp-PLA2水平联合预测急性STEMI患者冠状动脉HTB的曲线下面积为0.874,大于二者单独预测的0.794、0.791(P均<0.05)。结论急性STEMI患者血清SCUBE1、Lp-PLA2水平升高与冠状动脉HTB密切相关,二者联合检测对急性STEMI患者冠状动脉HTB的预测价值较高。 展开更多
关键词 急性ST段抬高型心肌梗死 可溶性信号肽-CUB-表皮生长因子样结构域蛋白1 脂蛋白磷脂酶A2 高血栓负荷
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多囊卵巢综合征患者卵巢颗粒细胞胰岛素抵抗的相关信号通路 被引量:1
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作者 任露露 任文超 +1 位作者 张晓轩 任春娥(审校) 《国际生殖健康/计划生育杂志》 CAS 2024年第1期32-37,共6页
胰岛素抵抗(insulin resistance,IR)与多囊卵巢综合征(polycystic ovary syndrome,PCOS)的发生发展有关,而与IR相关的胰岛素信号通路异常会引起卵巢局部代谢紊乱,进而影响卵泡发育及卵子质量。PCOS卵巢颗粒细胞中胰岛素作用的经典通路,... 胰岛素抵抗(insulin resistance,IR)与多囊卵巢综合征(polycystic ovary syndrome,PCOS)的发生发展有关,而与IR相关的胰岛素信号通路异常会引起卵巢局部代谢紊乱,进而影响卵泡发育及卵子质量。PCOS卵巢颗粒细胞中胰岛素作用的经典通路,包括磷脂酰肌醇3激酶(phosphoinositide 3-kinase,PI3K)/蛋白激酶B(protein kinase B,Akt)通路和丝裂原激活的蛋白激酶(mitogen-activated protein kinase,MAPK)/细胞外信号调节激酶(extracellular signal-regulated kinase,ERK)通路;与炎症相关的通路包括Toll样受体(Toll-like receptor,TLR)/核因子κB(nuclear factor-κB,NF-κB)通路等;氧化应激相关通路包括核转录因子红系2相关因子2(nuclear factor-erythroid 2-related factor 2,Nrf2)/血红素加氧酶-1(heme oxygenase-1,HO-1)途径和GTP酶免疫相关蛋白7(GTPase of immunity-associated protein 7,GIMAP7)/音猬因子(sonic hedgehog,SHH)途径;与脂质代谢相关的通路如激活转录因子4(activating transcription factor 4,ATF4)通路等。明确PCOS患者卵巢颗粒细胞中IR相关信号转导通路,增进PCOS病理生理机制的认识,进一步为PCOS的治疗提供新思路。 展开更多
关键词 多囊卵巢综合征 胰岛素抵抗 细胞内信号肽和蛋白质类 信号传导 颗粒细胞
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基于BCL-XL/Bax/Caspase-3/p53/CREB/BDNF信号通路解析南极磷虾蛋白肽辅助增强记忆的靶向作用机理
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作者 郑景如 孙娜 +1 位作者 杨晶琦 林松毅 《中国食品学报》 EI CAS CSCD 北大核心 2024年第8期206-215,共10页
目的:探索南极磷虾蛋白肽(EHAK)对东莨菪碱所致小鼠记忆损伤的预防作用。方法:将小鼠分为5组:空白对照组、记忆损伤模型组、南极磷虾蛋白肽低(31.25 mg/kg)、中(62.5 mg/kg)、高(125 mg/kg)剂量组,测定小鼠行为学指标、血清以及海马的... 目的:探索南极磷虾蛋白肽(EHAK)对东莨菪碱所致小鼠记忆损伤的预防作用。方法:将小鼠分为5组:空白对照组、记忆损伤模型组、南极磷虾蛋白肽低(31.25 mg/kg)、中(62.5 mg/kg)、高(125 mg/kg)剂量组,测定小鼠行为学指标、血清以及海马的生化指标和神经细胞蛋白表达水平,观察海马神经元状态。结果:行为实验表明EHAK能提高小鼠的空间学习记忆能力。在氧化应激水平和胆碱能系统方面,与模型组相比,125 mg/kg EHAK组小鼠血清中超氧化物歧化酶(SOD)活性升高(10.13±1.00)U/mg prot,丙二醛(MDA)含量降低(1.04±0.26)nmol/mg prot,乙酰胆碱(ACh)含量增加(10.13±1.00)μg/mg prot,乙酰胆碱酯酶(AChE)活性和MDA含量分别下降(0.90±0.05)U/mg prot和(1.16±0.01)nmol/mg prot。这些数据表明,EHAK通过预防氧化应激和胆碱能功能障碍来减轻东莨菪碱诱导的认知障碍。海马神经元状态显示南极磷虾蛋白肽可有效预防海马神经元凋亡,发生排列不均等情况。此外,EHAK可通过BCL-XL/Bax/Caspase-3/p53/CREB/BDNF信号通路抑制神经元凋亡,调节神经元的可塑性。结论:EHAK通过调节胆碱能系统和保护海马神经元来预防东莨菪碱引起的记忆障碍,提示EHAK有潜力作为有关功能食品的组成成分。 展开更多
关键词 南极磷虾蛋白肽 记忆损伤 信号通路
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Receptor-like protein kinase-mediated signaling in controlling root meristem homeostasis 被引量:5
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作者 Yafen Zhu Chong Hu Xiaoping Gou 《aBIOTECH》 2020年第3期157-168,共12页
Generation of the root greatly benefits higher plants living on land.Continuous root growth and development are achieved by the root apical meristem,which acts as a reservoir of stem cells.The stem cells,on the one ha... Generation of the root greatly benefits higher plants living on land.Continuous root growth and development are achieved by the root apical meristem,which acts as a reservoir of stem cells.The stem cells,on the one hand,constantly renew themselves through cell division.On the other hand,they differentiate into functional cells to form diverse tissues of the root.The balance between the maintenance and consumption of the root apical meristem is governed by cell-to-cell communications.Receptor-like protein kinases(RLKs),a group of signaling molecules localized on the cell surface,have been implicated in sensing multiple endogenous and environmental signals for plant development and stress adaptation.Over the past two decades,various RLKs and their ligands have been revealed to participate in regulating root meristem homeostasis.In this review,we focus on the recent studies about RLK-mediated signaling in regulating the maintenance and consumption of the root apical meristem. 展开更多
关键词 Distal root meristem peptides Proximal root meristem Receptor-like protein kinases Root apical meristem signal transduction
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Calcitonin gene-related peptide induces proliferation and monocyte chemoattractant protein-1 expression via extracellular signal-regulated kinase activation in rat osteoblasts 被引量:9
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作者 HAN Na ZHANG Dian-ying WANG Tian-bing ZHANG Pei-xun JIANG Bao-guo 《Chinese Medical Journal》 SCIE CAS CSCD 2010年第13期1748-1753,共6页
Background Calcitonin gene-related peptide (CGRP), a sensory neuropeptide, affects osteoblast proliferation and bone formation. However, the mechanisms are not fully understood. Monocyte chemoattractant protein-1 (... Background Calcitonin gene-related peptide (CGRP), a sensory neuropeptide, affects osteoblast proliferation and bone formation. However, the mechanisms are not fully understood. Monocyte chemoattractant protein-1 (MCP-1) is a chemokine that stimulates the migration of monocytes and plays important roles in regulating bone remolding during fracture repair. In this study, we investigated the effects of CGRP on proliferation and MCP-1 expression in cultured rat osteoblasts. Methods Primary rat osteoblasts were isolated from fetal rats calvariae. Cells were exposed to gradient concentrations (10^-9 to 10^-7 mol/L) of CGRP. Protein and mRNA levels of MCP-1 were quantified by Western blotting and semiquantitative reverse transcdption-polymerase chain reaction, respectively. The protein level of MCP-1 was investigated and compared in cell culture media by enzyme linked immunosorbent assay (ELISA). Phospho-extracellular signal-regulated kinase (ERK) expression was detected by Western blotting. Cell proliferative activity was measured by 3-(4,5-dimethylthiazol-2-yl)-2, 5-diphenyl tetrazolium bromide (MTT) and BrdU assay. The effects of MAPK/ERK kinase (MEK)-inhibitor U0126 on CGRP-induced MCP-1 expression in primary rat osteoblasts were examined. Results CGRP effectively enhanced primary rat osteoblast proliferation and led to significant increases in the expression of MCP-1 mRNA and protein in time- and dose-dependent manners. CGRP activated the ERK pathway. Pretreatment of cultured rat osteoblasts with MEK inhibitor U0126 resulted in dose-dependent inhibitions of CGRP-induced MCP-1 mRNA and protein levels. Thus, CGRP promoted cell proliferation and stimulated MCP-1 expression in cultured rat osteoblasts. Conclusion These studies document novel links between CGRP and MCP-1 and illuminate the effects of CGRP in regulating bone remodeling. 展开更多
关键词 calcitonin gene-related peptide monocyte chemoattractant protein-I rat primary osteoblasts extracellular signal-regulated kinase
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杆状病毒表达系统中NLS序列对鸭圆环病毒Cap基因表达的影响及其免疫原性研究
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作者 栾明朱 马跃宇 +4 位作者 刘立 孙莉 李明 费东亮 马鸣潇 《黑龙江畜牧兽医》 CAS 北大核心 2024年第3期66-72,共7页
为了研究核定位信号肽(Nuclear localization signal,NLS)序列对鸭圆环病毒(duck Circovirus,DuCV)Cap蛋白表达的影响,并探究不同免疫策略下重组蛋白的免疫原性,试验将去除和未去除NLS序列的DuCV Cap基因分别克隆至杆状病毒载体pFastBa... 为了研究核定位信号肽(Nuclear localization signal,NLS)序列对鸭圆环病毒(duck Circovirus,DuCV)Cap蛋白表达的影响,并探究不同免疫策略下重组蛋白的免疫原性,试验将去除和未去除NLS序列的DuCV Cap基因分别克隆至杆状病毒载体pFastBacⅠ中,通过杆状病毒表达系统进行表达,分析NLS序列对Cap蛋白表达的影响。采用不同的免疫策略,分别以原核表达系统构建的重组蛋白rCap(rCap组)、杆状病毒表达系统构建的rvAc-Cap(rvAc-Cap组)及rCap与rvAc-Cap联合(Prime-Boost组)作为免疫源免疫Balb/c小鼠,并设置PBS对照组,定期采血,检测DuCV IgG抗体水平、淋巴细胞增殖指数(SI)和γ干扰素(IFN-γ)、白细胞介素-2(IL-2)、白细胞介素-4(IL-4)等细胞因子水平,评价其免疫效果。结果表明:利用杆状病毒表达系统成功表达出重组杆状病毒rvAc-Cap和rvAc-NLS-Cap,且去除NLS序列的Cap基因表达水平更高;小鼠免疫重组蛋白rCap后,重组蛋白rCap与重组杆状病毒rvAc-Cap均能够刺激小鼠产生特异性IgG抗体,三免后Prime-Boost组的IgG抗体水平最高,而与其他免疫组差异不显著(P>0.05);三免后各免疫组淋巴细胞增殖指数显著高于PBS对照组,差异显著(P<0.05);各免疫组IFN-γ、IL-2和IL-4水平与PBS对照组比较差异显著(P<0.05),且Prime-Boost组水平最高。说明在杆状病毒表达系统中去除NLS序列可以提高Cap基因的表达;重组杆状病毒rvAc-Cap能够活化小鼠的免疫系统,刺激小鼠机体产生体液免疫与细胞免疫,而Prime-Boost免疫策略有效提高了免疫效果。 展开更多
关键词 鸭圆环病毒 CAP蛋白 核定位信号肽 杆状病毒表达系统 免疫原性
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基于脂肪干细胞的软骨组织工程的研究新进展
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作者 赖凌勇 徐房添 +2 位作者 张亚梁 缪圣旺 周波 《赣南医科大学学报》 2024年第10期1058-1063,共6页
软骨缺损的修复一直是临床上的难题。近年来,以脂肪干细胞(Adipose stem cells,ASCs)为种子细胞的软骨组织工程取得了重要进展,为软骨的修复提供了新方法,但尚不成熟。本文通过查阅国内外文献,就ASCs、相关的细胞因子以及各种新型的仿... 软骨缺损的修复一直是临床上的难题。近年来,以脂肪干细胞(Adipose stem cells,ASCs)为种子细胞的软骨组织工程取得了重要进展,为软骨的修复提供了新方法,但尚不成熟。本文通过查阅国内外文献,就ASCs、相关的细胞因子以及各种新型的仿生支架等在软骨组织工程中的最新研究进展及存在的问题进行综述。文献复习结果表明,ASCs具有来源丰富、免疫原性低等优势,尤其向软骨细胞分化的能力,使其有希望成为软骨组织工程理想的种子细胞。研究发现ASCs分泌的相关细胞因子,尤其是ASCs分泌的多种细胞外囊泡、外泌体(其内含有的多种非编码RNA)具有促进ASCs软骨分化、抑制软骨细胞凋亡等作用。另外,近年来软骨组织工程支架的研发也得到很大进展,如3D打印支架、氧化石墨烯的纳米材料支架、多种天然和人工合成材料构建的复合仿生支架等。目前存在的问题是:ASCs的成软骨诱导效率尚需进一步提高,以及开发出更适合体内微环境的3D仿生支架等,这将是软骨组织工程今后研究的重点。 展开更多
关键词 脂肪干细胞 软骨组织工程 支架材料 胞间信号肽类和蛋白质类
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酿酒酵母分泌蛋白组的计算机分析 被引量:29
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作者 杨静 李成云 +7 位作者 王云月 朱有勇 李进斌 何霞红 刘林 业艳芬 周晓罡 唐萍 《中国农业科学》 CAS CSCD 北大核心 2005年第3期516-522,共7页
结合计算机技术和生物信息学的方法,采用组合的信号肽分析软件 SignalP v3.0、TargetP v1.01、Big-PI predictor 和 TMHMM v2.0 对已公布的 6 700 个酿酒酵母(Saccaromyces cerevieiae)基因的 N-端氨基酸序列进行信号肽分析,同时系统分... 结合计算机技术和生物信息学的方法,采用组合的信号肽分析软件 SignalP v3.0、TargetP v1.01、Big-PI predictor 和 TMHMM v2.0 对已公布的 6 700 个酿酒酵母(Saccaromyces cerevieiae)基因的 N-端氨基酸序列进行信号肽分析,同时系统分析了信号肽的类型及结构。结果表明,在 6 700 个酿酒酵母蛋白中,163 个为Sec-信号肽分泌蛋白,经 Sec 途径分泌。在 163 个分泌蛋白中,有 47 个的信号肽没有典型的 N-区,仅有 H-区和C-区,其余 116 个分泌蛋白的信号肽包含完整的 3 个区,即 N-区、H-区和 C-区。比较了酿酒酵母与白假丝酵母菌(Candida albicans)分泌蛋白信号肽的氨基酸组成顺序,表明酿酒酵母与白假丝酵母菌的信号肽的氨基酸组成和顺序差异很大,两者信号肽长度分布范围、氨基酸种类及其出现频率大体一致。在酿酒酵母分泌蛋白中出现了少数氨基酸组成完全一致的信号肽,为进一步确认具有相同信号肽的分泌蛋白是否具有同源性,分别采用 BLAST 2SEQUENECES 和 CLUSTAL W 对具有相同信号肽的分泌蛋白进行了序列比对。结果表明具有相同信号肽的分泌蛋白同源性非常高,氨基酸组成也非常保守。由此可以推断,编码这些分泌蛋白的基因属于旁系同源基因(paralogous)。酿酒酵母作为一种模式生物,以其诸多的优点,被认为是表达? 展开更多
关键词 分泌蛋白 信号肽 白假丝酵母菌 表达 宿主 白及 酿酒酵母 外源蛋白 氨基酸序列 氨基酸组成
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马铃薯晚疫病菌全基因组分泌蛋白的初步分析 被引量:39
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作者 周晓罡 侯思名 +4 位作者 陈铎文 陶南 丁玉梅 孙茂林 张绍松 《遗传》 CAS CSCD 北大核心 2011年第7期785-793,共9页
利用马铃薯晚疫病菌全基因组测序结果,结合计算机技术和生物信息学的方法,对马铃薯晚疫病菌的蛋白进行分析,为明确该病原菌与寄主互作的分子机制奠定基础。文章应用信号肽预测软件SignalP v3.0和PSORT,跨膜螺旋结构预测软件TMHMM-2.0和T... 利用马铃薯晚疫病菌全基因组测序结果,结合计算机技术和生物信息学的方法,对马铃薯晚疫病菌的蛋白进行分析,为明确该病原菌与寄主互作的分子机制奠定基础。文章应用信号肽预测软件SignalP v3.0和PSORT,跨膜螺旋结构预测软件TMHMM-2.0和THUMBUP,GPI锚定位点预测软件big-PI Predictor,亚细胞器中蛋白定位分布预测软件TargetP v1.01,对已经公布的马铃薯晚疫病菌全基因组22 658个蛋白质氨基酸序列进行分析。结果发现,晚疫病菌全基因组编码蛋白中有671个为潜在的分泌型蛋白,占编码蛋白总数的3.0%。其中有45个分泌蛋白有功能方面的描述,其功能涉及细胞代谢、信号转导等方面;此外,还有一些与激发子类似的分泌蛋白,它们可能与晚疫病菌的毒性有关。 展开更多
关键词 晚疫病菌 信号肽 分泌蛋白
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粗糙脉孢菌基因组分泌蛋白的初步分析 被引量:30
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作者 周晓罡 李成云 +6 位作者 赵之伟 苏源 张绍松 李进斌 杨静 刘林 业艳芬 《遗传》 CAS CSCD 北大核心 2006年第2期200-207,共8页
利用信号肽预测软件SignalPv3.0和PSORT,跨膜螺旋结构预测软件TMHMMv2.0和THUMBUP,GPI锚定位点预测软件bigPIPredictor和亚细胞器中蛋白定位分布预测软件TargetPv1.01对粗糙脉孢菌全基因组数据库中已公布的10082个氨基酸序列进行预测分... 利用信号肽预测软件SignalPv3.0和PSORT,跨膜螺旋结构预测软件TMHMMv2.0和THUMBUP,GPI锚定位点预测软件bigPIPredictor和亚细胞器中蛋白定位分布预测软件TargetPv1.01对粗糙脉孢菌全基因组数据库中已公布的10082个氨基酸序列进行预测分析。结果表明,在粗糙脉孢菌中有437个蛋白为分泌蛋白,编码这些蛋白最小的可读框(openreadingframe,ORF)为252bp,最大为6604bp,平均1433bp,分泌蛋白信号肽长度介于15~59个氨基酸之间。在437个分泌蛋白中,205个具有功能描述,主要包括各种酶类、细胞能量生成、运转以及自身修复、防卫等多种功能。这些蛋白所参与的生化过程可能发生在膜外的周质空间或是菌体外的场所,为该物种营养的摄取,以及对环境做出响应服务。 展开更多
关键词 粗糙脉孢菌 信号肽 分泌蛋白
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全基因组预测稻瘟菌的分泌蛋白 被引量:41
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作者 陈继圣 郑士琴 +3 位作者 郑武 周洁 鲁国东 王宗华 《中国农业科学》 CAS CSCD 北大核心 2006年第12期2474-2482,共9页
目的分泌蛋白多为病原微生物与植物受体蛋白起作用的激发子和其它致病因子,深入研究分泌蛋白将有助于明确植物与病原微生物互作的分子机制。利用稻瘟菌基因组学研究成果,结合计算机技术和生物信息学的方法,分析其分泌蛋白组学,将有助于... 目的分泌蛋白多为病原微生物与植物受体蛋白起作用的激发子和其它致病因子,深入研究分泌蛋白将有助于明确植物与病原微生物互作的分子机制。利用稻瘟菌基因组学研究成果,结合计算机技术和生物信息学的方法,分析其分泌蛋白组学,将有助于全面掌握其致病因子的结构与功能。方法利用SignalP对稻瘟菌基因库中所有ORF的N-端信号肽存在与否进行预测,再依次通过Protcomp、TMHMM、big-PIPredictor和TargetP预测程序进行验证,寻找出所有可编码信号肽的基因。结果对11108个稻瘟菌的ORF进行分析,最终预测出共有1235个ORF可编码分泌蛋白。结论经验证此预测方法之可靠性较高,这为深入研究分泌蛋白组学奠定了基础。 展开更多
关键词 稻瘟菌 分泌蛋白 信号肽 预测程序
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大丽轮枝菌(Verticillium dahliae VdLs.17)分泌组预测及分析 被引量:44
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作者 田李 陈捷胤 +2 位作者 陈相永 汪佳妮 戴小枫 《中国农业科学》 CAS CSCD 北大核心 2011年第15期3142-3153,共12页
【目的】预测并分析大丽轮枝菌基因组范围内的分泌蛋白,为大丽轮枝菌分泌蛋白致病机理的研究奠定基础。【方法】利用已公布的大丽轮枝菌全基因组序列,组合使用生物信息学软件SignalP、TargetP、TMHMM、Big-pi和PROSITE,预测大丽轮枝菌... 【目的】预测并分析大丽轮枝菌基因组范围内的分泌蛋白,为大丽轮枝菌分泌蛋白致病机理的研究奠定基础。【方法】利用已公布的大丽轮枝菌全基因组序列,组合使用生物信息学软件SignalP、TargetP、TMHMM、Big-pi和PROSITE,预测大丽轮枝菌基因组范围内所有分泌蛋白,定义为分泌组。统计分析分泌组中蛋白N-端信号肽特点;应用碳水化合物活性酶类数据库和病原菌-寄主互作蛋白数据库对分泌组蛋白进行注释,预测分泌组中潜在果胶酶、纤维素酶和病原菌寄主互作蛋白;利用真菌激发子的保守结构域,预测分泌组中潜在的激发子蛋白集;应用BLASTP程序比较分析大丽轮枝菌和黑白轮枝菌分泌组,获得大丽轮枝菌相对于黑白轮枝菌特异的分泌蛋白。【结果】大丽轮枝菌分泌组共有922个蛋白。信号肽分析表明,以19个氨基酸为信号肽的蛋白数目最多,非极性氨基酸丙氨酸的出现频率最高,而有带电侧链的氨基酸天冬氨酸和谷氨酸的出现频率最低,信号肽的-3和-1位置上的氨基酸相对保守。大丽轮枝菌分泌组含有158个潜在的碳水化合物活性酶类,其中,包括10个果胶水解酶和14个果胶裂解酶;190个潜在的病原菌-寄主互作蛋白、97个含有RxLx[EDQ]模体的蛋白和52个富含半胱氨酸的小分子量分泌蛋白;58个相对于黑白轮枝菌分泌组特异的蛋白。【结论】本文建立了预测大丽轮枝菌分泌组蛋白的方法。分泌组蛋白信号肽长度具有高度的变异性,氨基酸组成多为脂肪族氨基酸,序列在C-端结构域较为保守。分泌组中包含大量潜在的果胶降解酶、病原菌-寄主互作蛋白、RxLx[EDQ]模体蛋白和富含半胱氨酸的小分子量蛋白等致病相关蛋白。 展开更多
关键词 大丽轮枝菌 分泌蛋白 信号肽 碳水化合物活性酶 激发子
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