The underlying causes of biodiversity disparities among geographic regions have long been a fundamental theme in ecology and evolution.However,the patterns of phylogenetic diversity(PD) and phylogenetic beta diversity...The underlying causes of biodiversity disparities among geographic regions have long been a fundamental theme in ecology and evolution.However,the patterns of phylogenetic diversity(PD) and phylogenetic beta diversity(PBD) of congeners that are disjunctly distributed between eastern Asia-eastern North America(EA-ENA disjuncts) and their associated factors remain unknown.Here we investigated the standardized effect size of PD(SES-PD),PBD,and potentially associated factors in 11natural mixed forest sites(five in EA and six in ENA) where abundant EA-ENA disjuncts occur.We found that the disjuncts in ENA possessed higher SES-PD than those in EA at the continental scale(1.96vs-1.12),even though the number of disjunct species in ENA is much lower than in EA(128 vs 263).SESPD of the EA-ENA disjuncts tended to decrease with increasing latitude in 11 sites.The latitudinal diversity gradient of SES-PD was stronger in EA sites than in ENA sites.Based on the unweighted unique fraction metric(UniFrac) distance and the phylogenetic community dissimilarity,PBD showed that the two northern sites in EA were more similar to the six-site ENA group than to the remaining southern EA sites.Based on the standardized effect size of mean pairwise distances(SES-MPD),nine of eleven studied sites showed a neutral community structure(-1.96 ≤SES-MPD ≤1.96).Both Pearson’s r and structural equation modeling suggested that SES-PD of the EA-ENA disjuncts was mostly associated with mean divergence time.Moreover,SES-PD of the EA-ENA disjuncts was positively correlated with temperaturerelated climatic factors,although negatively correlated with mean diversification rate and community structure.By applying approaches from phylogenetics and community ecology,our work sheds light on historical patterns of the EA-ENA disjunction and paves the way for further research.展开更多
Bangiales is the only order of the Bangiophyceae and has been suggested to be monophyletic. This order contains approximately 190 species and is distributed worldwide. Previous molecular studies have produced robust p...Bangiales is the only order of the Bangiophyceae and has been suggested to be monophyletic. This order contains approximately 190 species and is distributed worldwide. Previous molecular studies have produced robust phylogenies among the red algae, but the divergence times, historical biogeography and evolutionary rates of Bangiales have rarely been studied. Phylogenetic relationships within the Bangiales were examined using the concatenated gene sets from all available organellar genomes. This analysis has revealed the topology((( Bangia, Porphyra) Pyropia) Wildemania). Molecular dating indicates that Bangiales diversifi ed approximately 246.40 million years ago(95% highest posterior density(HPD)= 194.78–318.24 Ma, posterior probability(PP)=0.99) in the Late Permian and Early Triassic, and that the ancestral species most likely originated from eastern Gondwanaland(currently New Zealand and Australia) and subsequently began to spread and evolve worldwide. Based on pairwise comparisons, we found a slower rate of nucleotide substitutions and lower rates of diversifi cation in Bangiales relative to Florideophyceae. Compared with Viridiplantae(green algae and land plants), the evolutionary rates of Bangiales and other Rhodophyte groups were found to be dramatically faster, by more than 3-fold for plastid genome(ptDNA) and 15-fold for mitochondrial genome(mtDNA). In addition, an average 2.5-fold lower dN/dS was found for the algae than for the land plants, which indicates purifying selection of the algae.展开更多
在基于核磁共振(NMR)的代谢组学数据分析中,尺度缩放是关键的预处理步骤之一,其主要目的是通过调整数据的方差结构,改善后续的多变量统计分析的结果。从信息熵的角度出发,利用KullbackLeibler(K-L)散度来度量不同实验分组的生物样品的1 ...在基于核磁共振(NMR)的代谢组学数据分析中,尺度缩放是关键的预处理步骤之一,其主要目的是通过调整数据的方差结构,改善后续的多变量统计分析的结果。从信息熵的角度出发,利用KullbackLeibler(K-L)散度来度量不同实验分组的生物样品的1 H NMR波谱数据的差异程度,并结合单位方差缩放法,提出一种基于K-L散度的尺度缩放方法。该方法先利用单位方差法将数据各变量的标准差调整到同一水平上,再利用K-L散度对各变量进行有监督地加权,增强重要变量、减弱无关变量。由于K-L散度是在概率分布的意义上度量数据间的差异程度,且对于高斯和非高斯分布的数据均适用,因此能更准确地度量不同实验分组样品的1 H NMR波谱数据的差异性,从而更有效地地对谱数据的重要变量进行识别和加权。人群尿液1 H NMR波谱数据的分析结果表明,基于K-L散度的尺度缩放方法能有效抑制噪声变量,同时很好地区分特征变量和非特征变量;提高主成分回归(PCR)模型的判别能力;改善偏最小二乘回归判别分析(PLS-DA)模型的解释能力、预测能力以及对特征代谢物的辨识能力。展开更多
Our research studied the physiological response of participants during a creative task to investigate if a person’s psychophysiological state was correlated with divergent thinking performance. We used heart rate var...Our research studied the physiological response of participants during a creative task to investigate if a person’s psychophysiological state was correlated with divergent thinking performance. We used heart rate variability as our physiological measure. We asked 50 participants to perform a cognitive task that assessed their divergent thinking skills and recorded their heart rate and heart rate variability (HRV) before and during the task. Frequency domain analysis was performed on the HRV. The results showed that there was a significant negative correlation between log-transformed low frequency HRV power and the number of “divergent thinking” words generated. Our results suggest that a person’s psychophysiological state is correlated with their divergent thinking performance, and that attention and motivation may be important factors, however this needs further research. Our findings also suggest that being in a relaxed state before the start of a creative task is not a predictor of creative performance.展开更多
We obtain the expansion of Renyi divergence of order α (0 〈 α 〈 1) between the normalized sum of IID continuous random variables and the Caussian limit under minimal moment conditions via Edgeworth-type expansio...We obtain the expansion of Renyi divergence of order α (0 〈 α 〈 1) between the normalized sum of IID continuous random variables and the Caussian limit under minimal moment conditions via Edgeworth-type expansion. The rate is faster than that of Shannon case, which can be used to improve the rate of convergence in total variance norm.展开更多
The largest divergence rate is a characterization of the stability behavior for dynamic systems, which has been proven to be equal to the least possible common matrix set measure (extreme measure) of switched linear...The largest divergence rate is a characterization of the stability behavior for dynamic systems, which has been proven to be equal to the least possible common matrix set measure (extreme measure) of switched linear systems. To determine the largest divergence rate is an interesting and open problem. In this paper, an algorithm is introduced to estimate the largest divergence rate for a class of the 3rd-order switched linear systems, by which any desired accurate estimation could be derived. It explores a way to determine the largest divergence rate for the 3rd-order switched linear systems. Furthermore, the accurate estimation provides a qualitative and quantitative analysis for guaranteed stability of switched linear systems.展开更多
The molecular phylogenetic trees of 10 species representing 6 genera of the family Rhizophoraceae have been constructed using the sequences of chloroplast genes ma/K and rbcL as well as the ITS regions of nuclear ribo...The molecular phylogenetic trees of 10 species representing 6 genera of the family Rhizophoraceae have been constructed using the sequences of chloroplast genes ma/K and rbcL as well as the ITS regions of nuclear ribosomal DMA. Relative-rate tests between lineages in these phylogenetic trees have been performed. On the basis of the results of the relative-rate tests and related molecular evolutionary rate data, the divergence times between the lineages are estimated as follows: ( i) the first divergence time in these genera is 132.25 million years ago (mya); (ii) the average divergence time between two tribes, i.e. inland Legnotideae (except Carallia brachiata) and mangrove Rhizophoreae, is 64.13 mya; and (iii) the average divergence time between two inland species, C. garciniaefolia and C. pectinifolia, is 19.92 mya.展开更多
基金supported by the National Natural Science Foundation of China (Grant No.31461123001 to C.X.F.)the US National Science Foundation Dimensions of Biodiversity US-China Program (DEB-1442280 to P.S.S.and D.E.S.)+1 种基金the HZAU Talent Start-up Fund (Grant no.11042210014 to M.S.)the China Scholarship Council (Grant no.201806320056 to H.Y.L.)。
文摘The underlying causes of biodiversity disparities among geographic regions have long been a fundamental theme in ecology and evolution.However,the patterns of phylogenetic diversity(PD) and phylogenetic beta diversity(PBD) of congeners that are disjunctly distributed between eastern Asia-eastern North America(EA-ENA disjuncts) and their associated factors remain unknown.Here we investigated the standardized effect size of PD(SES-PD),PBD,and potentially associated factors in 11natural mixed forest sites(five in EA and six in ENA) where abundant EA-ENA disjuncts occur.We found that the disjuncts in ENA possessed higher SES-PD than those in EA at the continental scale(1.96vs-1.12),even though the number of disjunct species in ENA is much lower than in EA(128 vs 263).SESPD of the EA-ENA disjuncts tended to decrease with increasing latitude in 11 sites.The latitudinal diversity gradient of SES-PD was stronger in EA sites than in ENA sites.Based on the unweighted unique fraction metric(UniFrac) distance and the phylogenetic community dissimilarity,PBD showed that the two northern sites in EA were more similar to the six-site ENA group than to the remaining southern EA sites.Based on the standardized effect size of mean pairwise distances(SES-MPD),nine of eleven studied sites showed a neutral community structure(-1.96 ≤SES-MPD ≤1.96).Both Pearson’s r and structural equation modeling suggested that SES-PD of the EA-ENA disjuncts was mostly associated with mean divergence time.Moreover,SES-PD of the EA-ENA disjuncts was positively correlated with temperaturerelated climatic factors,although negatively correlated with mean diversification rate and community structure.By applying approaches from phylogenetics and community ecology,our work sheds light on historical patterns of the EA-ENA disjunction and paves the way for further research.
基金Supported by the National Natural Science Foundation of China(No.31372517)the Scientific and Technological Innovation Project supported by the Qingdao National Laboratory for Marine Science and Technology(No.2015ASKJ02)the National Infrastructure of Fishery Germplasm Resources(No.2016DKA30470)
文摘Bangiales is the only order of the Bangiophyceae and has been suggested to be monophyletic. This order contains approximately 190 species and is distributed worldwide. Previous molecular studies have produced robust phylogenies among the red algae, but the divergence times, historical biogeography and evolutionary rates of Bangiales have rarely been studied. Phylogenetic relationships within the Bangiales were examined using the concatenated gene sets from all available organellar genomes. This analysis has revealed the topology((( Bangia, Porphyra) Pyropia) Wildemania). Molecular dating indicates that Bangiales diversifi ed approximately 246.40 million years ago(95% highest posterior density(HPD)= 194.78–318.24 Ma, posterior probability(PP)=0.99) in the Late Permian and Early Triassic, and that the ancestral species most likely originated from eastern Gondwanaland(currently New Zealand and Australia) and subsequently began to spread and evolve worldwide. Based on pairwise comparisons, we found a slower rate of nucleotide substitutions and lower rates of diversifi cation in Bangiales relative to Florideophyceae. Compared with Viridiplantae(green algae and land plants), the evolutionary rates of Bangiales and other Rhodophyte groups were found to be dramatically faster, by more than 3-fold for plastid genome(ptDNA) and 15-fold for mitochondrial genome(mtDNA). In addition, an average 2.5-fold lower dN/dS was found for the algae than for the land plants, which indicates purifying selection of the algae.
文摘在基于核磁共振(NMR)的代谢组学数据分析中,尺度缩放是关键的预处理步骤之一,其主要目的是通过调整数据的方差结构,改善后续的多变量统计分析的结果。从信息熵的角度出发,利用KullbackLeibler(K-L)散度来度量不同实验分组的生物样品的1 H NMR波谱数据的差异程度,并结合单位方差缩放法,提出一种基于K-L散度的尺度缩放方法。该方法先利用单位方差法将数据各变量的标准差调整到同一水平上,再利用K-L散度对各变量进行有监督地加权,增强重要变量、减弱无关变量。由于K-L散度是在概率分布的意义上度量数据间的差异程度,且对于高斯和非高斯分布的数据均适用,因此能更准确地度量不同实验分组样品的1 H NMR波谱数据的差异性,从而更有效地地对谱数据的重要变量进行识别和加权。人群尿液1 H NMR波谱数据的分析结果表明,基于K-L散度的尺度缩放方法能有效抑制噪声变量,同时很好地区分特征变量和非特征变量;提高主成分回归(PCR)模型的判别能力;改善偏最小二乘回归判别分析(PLS-DA)模型的解释能力、预测能力以及对特征代谢物的辨识能力。
文摘Our research studied the physiological response of participants during a creative task to investigate if a person’s psychophysiological state was correlated with divergent thinking performance. We used heart rate variability as our physiological measure. We asked 50 participants to perform a cognitive task that assessed their divergent thinking skills and recorded their heart rate and heart rate variability (HRV) before and during the task. Frequency domain analysis was performed on the HRV. The results showed that there was a significant negative correlation between log-transformed low frequency HRV power and the number of “divergent thinking” words generated. Our results suggest that a person’s psychophysiological state is correlated with their divergent thinking performance, and that attention and motivation may be important factors, however this needs further research. Our findings also suggest that being in a relaxed state before the start of a creative task is not a predictor of creative performance.
基金supported by National Basic Research Program of China(973 Program)(2011CB707802,2013CB910200)Natural Science Foundation of China Grant(11126180)
文摘We obtain the expansion of Renyi divergence of order α (0 〈 α 〈 1) between the normalized sum of IID continuous random variables and the Caussian limit under minimal moment conditions via Edgeworth-type expansion. The rate is faster than that of Shannon case, which can be used to improve the rate of convergence in total variance norm.
基金supported by the National Natural Science Foundation of China (Nos. 60925013, 61273121)
文摘The largest divergence rate is a characterization of the stability behavior for dynamic systems, which has been proven to be equal to the least possible common matrix set measure (extreme measure) of switched linear systems. To determine the largest divergence rate is an interesting and open problem. In this paper, an algorithm is introduced to estimate the largest divergence rate for a class of the 3rd-order switched linear systems, by which any desired accurate estimation could be derived. It explores a way to determine the largest divergence rate for the 3rd-order switched linear systems. Furthermore, the accurate estimation provides a qualitative and quantitative analysis for guaranteed stability of switched linear systems.
文摘The molecular phylogenetic trees of 10 species representing 6 genera of the family Rhizophoraceae have been constructed using the sequences of chloroplast genes ma/K and rbcL as well as the ITS regions of nuclear ribosomal DMA. Relative-rate tests between lineages in these phylogenetic trees have been performed. On the basis of the results of the relative-rate tests and related molecular evolutionary rate data, the divergence times between the lineages are estimated as follows: ( i) the first divergence time in these genera is 132.25 million years ago (mya); (ii) the average divergence time between two tribes, i.e. inland Legnotideae (except Carallia brachiata) and mangrove Rhizophoreae, is 64.13 mya; and (iii) the average divergence time between two inland species, C. garciniaefolia and C. pectinifolia, is 19.92 mya.