Objective:To investigate the prevalence,phylogenetics and DNA barcoding of Zeylanicobdella arugamensis(Z.arugamensis) from crimson snapper(Lutjanus erythropterus),Jerejak Island,Penang,Malaysia.Methods:Experiment was ...Objective:To investigate the prevalence,phylogenetics and DNA barcoding of Zeylanicobdella arugamensis(Z.arugamensis) from crimson snapper(Lutjanus erythropterus),Jerejak Island,Penang,Malaysia.Methods:Experiment was conducted with 200 fish specimens of cultured Lutjanus erythropterus from Jerejak Island,Penang,Peninsular Malaysia.The water temperature and length for each fish were measured prior to parasites examination.Next,the morphological identification of parasites was performed.Genomic DNA from parasites was extracted for further molecular analysis.After PCR amplification,phylogenetic tree was constructed.The lowest Bayesian information criterion scores showed that the most compatible model is Tajima and Nei.Finally,data sets of cytochrome oxidase subunit I gene sequence and trace file have been submitted to Barcode of Life Data System.Results:The prevalence rate of Z.arugamensis was recorded to be 11.5%,and the intensity was 1.48.The low intensity was due to the water temperature recorded in this study(32.9–33.2 C).All the individuals of Z.arugamensis recorded in this study showed a close relationship with species that were recorded in NCBI database(Z.arugamensis DQ414344,Aestabdella leiostomi DQ414305,Pterobdella amara DQ414334 and Cystobranchus meyeri DQ414315) but less relationship with Aestabdella abditovesiculata DQ414300.Finally,the DNA sequences submitted to Barcode of Life Data System in accordance to species have already obtained Barcode Index Number as BOLD:ACM3477.Conclusions:This study has provided an overview of sequence divergence at cytochrome oxidase subunit I gene,DNA barcodes and parasite prevalence of Z.arugamensis.展开更多
The red snapper Lutjanus campechanus (Poey, 1860) has a high commercial value that sustains an important fishery in Mexico. In this study, the patterns in morphological variations from early juvenile to adult stages w...The red snapper Lutjanus campechanus (Poey, 1860) has a high commercial value that sustains an important fishery in Mexico. In this study, the patterns in morphological variations from early juvenile to adult stages were assessed by geometric methods (GM) in 194 organisms. Changes in shape were more evident and rapid in the early juvenile stage and decreased during adulthood. The principal components analysis of shape (Relative Warp Analysis, or RWA) identified size and body depth as the main sources of variance associated to both juvenile and adult organisms. The outline of the head and the tail showed the most noticeable differences following the ontogenic pathway visualized by thin-plate splines indicating that the ontogenetic pathway of the upper half and the lower half of the dorsal head profile (DHP) are in relatively opposite directions than those from the tail that bends ventrally. The Two-Block Partial Least Square analysis (2B-PLS) and their CR coefficients showed that the two modules had a moderate linear trend (p = 0.001). Although the blocks have morphological changes at different rates, there is a moderate synchrony in growth by modules. This study is the first to report the use of geometrical morphometry in L. campechanus in Mexico.展开更多
The phylogenetic relationships of 13 snapper species from the South China Sea have been established using the combined DNA sequences of three full-length mitochondrial genes (COI, COII and CYTB) and two partial nuclea...The phylogenetic relationships of 13 snapper species from the South China Sea have been established using the combined DNA sequences of three full-length mitochondrial genes (COI, COII and CYTB) and two partial nuclear genes (RAG1, RAG2). The 13 species (genus Lutjanus) were selected after DNA barcoding 72 individuals, representing 20 species. Our study suggests that although DNA barcoding aims to develop species identification systems, it may also be useful in the construction of phylogenies by aiding the selection of taxa. Combined mitochondrial and nuclear gene data has an advantage over an individual dataset because of its higher resolving power.展开更多
The present work documented two snapper species, Lutjanus fulvus Forster, 1801 and Lutjanus erythropterus Bloch, 1790, recently collected from the Saint Martin's Island, Bay of Bengal, Bangladesh, during a survey ...The present work documented two snapper species, Lutjanus fulvus Forster, 1801 and Lutjanus erythropterus Bloch, 1790, recently collected from the Saint Martin's Island, Bay of Bengal, Bangladesh, during a survey on coral associated fishes of Bangladesh from July 2017 to September 2018. These two species were identified with morphological characteristics and by analyzing partial mitochondrial COI sequences. The document also included an updated checklist of snappers available in Bangladesh.展开更多
基金Supported by Universiti Sains Malaysia Research University Grant(1001/PBIOLOGI/855003)
文摘Objective:To investigate the prevalence,phylogenetics and DNA barcoding of Zeylanicobdella arugamensis(Z.arugamensis) from crimson snapper(Lutjanus erythropterus),Jerejak Island,Penang,Malaysia.Methods:Experiment was conducted with 200 fish specimens of cultured Lutjanus erythropterus from Jerejak Island,Penang,Peninsular Malaysia.The water temperature and length for each fish were measured prior to parasites examination.Next,the morphological identification of parasites was performed.Genomic DNA from parasites was extracted for further molecular analysis.After PCR amplification,phylogenetic tree was constructed.The lowest Bayesian information criterion scores showed that the most compatible model is Tajima and Nei.Finally,data sets of cytochrome oxidase subunit I gene sequence and trace file have been submitted to Barcode of Life Data System.Results:The prevalence rate of Z.arugamensis was recorded to be 11.5%,and the intensity was 1.48.The low intensity was due to the water temperature recorded in this study(32.9–33.2 C).All the individuals of Z.arugamensis recorded in this study showed a close relationship with species that were recorded in NCBI database(Z.arugamensis DQ414344,Aestabdella leiostomi DQ414305,Pterobdella amara DQ414334 and Cystobranchus meyeri DQ414315) but less relationship with Aestabdella abditovesiculata DQ414300.Finally,the DNA sequences submitted to Barcode of Life Data System in accordance to species have already obtained Barcode Index Number as BOLD:ACM3477.Conclusions:This study has provided an overview of sequence divergence at cytochrome oxidase subunit I gene,DNA barcodes and parasite prevalence of Z.arugamensis.
文摘The red snapper Lutjanus campechanus (Poey, 1860) has a high commercial value that sustains an important fishery in Mexico. In this study, the patterns in morphological variations from early juvenile to adult stages were assessed by geometric methods (GM) in 194 organisms. Changes in shape were more evident and rapid in the early juvenile stage and decreased during adulthood. The principal components analysis of shape (Relative Warp Analysis, or RWA) identified size and body depth as the main sources of variance associated to both juvenile and adult organisms. The outline of the head and the tail showed the most noticeable differences following the ontogenic pathway visualized by thin-plate splines indicating that the ontogenetic pathway of the upper half and the lower half of the dorsal head profile (DHP) are in relatively opposite directions than those from the tail that bends ventrally. The Two-Block Partial Least Square analysis (2B-PLS) and their CR coefficients showed that the two modules had a moderate linear trend (p = 0.001). Although the blocks have morphological changes at different rates, there is a moderate synchrony in growth by modules. This study is the first to report the use of geometrical morphometry in L. campechanus in Mexico.
基金supported by the National Science and Technology Pillar Program in the 11th Five-Year Plan Period of China (Grant No. 2007BAD29B03)the National Natural Science Foundation of China (Grant No. 30972253)
文摘The phylogenetic relationships of 13 snapper species from the South China Sea have been established using the combined DNA sequences of three full-length mitochondrial genes (COI, COII and CYTB) and two partial nuclear genes (RAG1, RAG2). The 13 species (genus Lutjanus) were selected after DNA barcoding 72 individuals, representing 20 species. Our study suggests that although DNA barcoding aims to develop species identification systems, it may also be useful in the construction of phylogenies by aiding the selection of taxa. Combined mitochondrial and nuclear gene data has an advantage over an individual dataset because of its higher resolving power.
基金funded by a competitive research grant of PIU-BARC, NATP-2 project of Bangladesh Agricultural Research Council。
文摘The present work documented two snapper species, Lutjanus fulvus Forster, 1801 and Lutjanus erythropterus Bloch, 1790, recently collected from the Saint Martin's Island, Bay of Bengal, Bangladesh, during a survey on coral associated fishes of Bangladesh from July 2017 to September 2018. These two species were identified with morphological characteristics and by analyzing partial mitochondrial COI sequences. The document also included an updated checklist of snappers available in Bangladesh.
