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脯氨酸与Zn^(2+/1+/0)相互作用及性质 被引量:1
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作者 孙晓玲 金芩 +2 位作者 王燕妮 蔡跃飘 王朝杰 《物理化学学报》 SCIE CAS CSCD 北大核心 2014年第6期1071-1085,共15页
运用M062X和X3LYP两种密度泛函理论(DFT)方法在TZVP和6-311++G(2d,p)+LANL2DZ基组水平上,对已报道的15种脯氨酸(Pro)构象分别与Zn2+、Zn+及Zn进行不同方式配位体系的几何结构、能量学特征、振动光谱和电子结构性质进行了计算研究.Pro-Z... 运用M062X和X3LYP两种密度泛函理论(DFT)方法在TZVP和6-311++G(2d,p)+LANL2DZ基组水平上,对已报道的15种脯氨酸(Pro)构象分别与Zn2+、Zn+及Zn进行不同方式配位体系的几何结构、能量学特征、振动光谱和电子结构性质进行了计算研究.Pro-Zn2+、Pro-Zn+和Pro-Zn三种体系分别得到19、21和24种稳定结构.Pro-Zn2+体系中Zn2+与Pro两性离子的氧端(OO)配位形成的四元环结构能量最低,其次是与Pro羧羰基氧和亚氨基氮配位形成的五元环结构,而Pro-Zn+体系与之相反.Pro-Zn2+/1+/0体系的相对能差逐渐降低,结合能分别位于-620--936,-139--325和-1.5--22 kJ·mol-1范围,配位Pro的变形能随价态降低而减小.ProZn2+体系受方法和基组影响较大,离子体系中Zn均获得少量负电荷,所有配位化合物的前线轨道能差均比相应两个碎片要低. 展开更多
关键词 脯氨酸 m062x X3LYP Zn原子 Zn离子
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H_2O_2稳定性的密度泛函研究
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作者 程学礼 《泰山学院学报》 2018年第3期91-94,共4页
用密度泛函方法优化了H_2O_2、H_3O_2^+、(H_2O_2)(H_2O)_2和(H_2O_2)(H_2O)_3的基态结构和T_1激发态结构,在基态结构基础上用TD-M062X方法研究了其发射光谱.研究表明,考虑键合溶剂分子和溶液真实环境对激发态结构有着至关重要的影响.
关键词 H2O2 H3O2^+ 水合分子 DFT TD-m062x
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DNA碱基(对)及其Zn^(2+)复合物对CO_2,N_2,H_2小分子的吸附 被引量:2
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作者 师帅 黄曦明 艾洪奇 《高等学校化学学报》 SCIE EI CAS CSCD 北大核心 2014年第7期1492-1499,共8页
用M062X/6-31+G*方法探讨了腺嘌呤(A)、胸腺嘧啶(T)、鸟嘌呤(G)、胞嘧啶(C)及其碱基对(AT,GC)以及Zn2+复合物(AAA-Zn2+,AAT-Zn2+和GGC-Zn2+)对混合小分子H2,N2,CO2的吸附情况,系统研究了其相互作用模式及吸附强度,预测了常见混合气体分... 用M062X/6-31+G*方法探讨了腺嘌呤(A)、胸腺嘧啶(T)、鸟嘌呤(G)、胞嘧啶(C)及其碱基对(AT,GC)以及Zn2+复合物(AAA-Zn2+,AAT-Zn2+和GGC-Zn2+)对混合小分子H2,N2,CO2的吸附情况,系统研究了其相互作用模式及吸附强度,预测了常见混合气体分子与碱基(对)及复合物的吸附位置.研究表明,CO2倾向于以氢键的形式结合到碱基(对)的氨基氢或亚氨基氢上,而N2和H2分子则倾向于结合到这些碱基(对)的平面π电子上,以堆垛的形式存在.根据吸附强度大小,预测了由这些碱基为骨架合成的金属有机骨架(MOF)吸附材料对小分子的选择性吸附顺序为H2<N2<CO2.研究表明,以AT对结合金属Zn2+为节点的纯天然碱基对构成的MOF要比实验合成的AA碱基对与Zn2+结合的MOF具备更好的吸附和分离性能. 展开更多
关键词 碱基对-Zn2+复合物 m062x方法 吸附 氢键 小分子 金属有机骨架材料
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Absorption and Emission Spectra of p-Phenylbenzoyl Methanthiol: Methanol Effect Based on M06-2X Calculations 被引量:1
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作者 程学礼 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2019年第3期476-482,共7页
The absorption and emission spectra, as well as the photolysis mechanism of p-phenylbenzoyl methanthiol in methanol and in gas phase were elucidated in detail based on the molecular structures of the ground states, ex... The absorption and emission spectra, as well as the photolysis mechanism of p-phenylbenzoyl methanthiol in methanol and in gas phase were elucidated in detail based on the molecular structures of the ground states, excited states and their spectroscopic characters. The TD-M062 X calculations demonstrate that the S_1 state in gas phase will decompose into SH and p-phenylbenzoyl radical via a barrierless process, but the T_1 and T_2 do not photolyze. By adding 1 and 2 methanol molecules onto p-phenylbenzoyl methanthiol, the CPCM model can perfectly describe the solvation effects of methanol. Methanol may stabilize the excitation states, but also protects the resulting radical products from recombination. 展开更多
关键词 TD-m062x PHOTODECOMPOSITION CIS ABSORPTION SPECTRA
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Quantum Mechanical Study on the π-π Stacking Interaction and Change in Conformation of Phenolic Systems with Different Intermolecular Rotations
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作者 Ibrahim Ali Shruti Sharma Bipul Bezbaruah 《Computational Chemistry》 2018年第4期71-86,共16页
Aromatic systems like phenol, diphenol, cyano benzene, chloro benzene, aniline etc shows effective π-π stacking interactions, long range van der Waals forces;ion-π interactions etc. and these forces of interactions... Aromatic systems like phenol, diphenol, cyano benzene, chloro benzene, aniline etc shows effective π-π stacking interactions, long range van der Waals forces;ion-π interactions etc. and these forces of interactions play an crucial role in the stability of stacked π-dimeric system. On the other hand, substituents and conformational change in the stacked dimmers of aromatic system may also change the stability of different stacked dimers. In this current study, stacked phenolic dimmers (both phenol and diphenol) have been taken for investigation of the stacking π-π interaction. But, the stacking interactions are also greatly affected by the conformational change with internal rotation (i.e. dihedral angle, φ) between the stacked dimers. It is generally accepted that larger basis sets are required for the highly accurate calculation of interaction energies for any stacked aromatic models. But, it has recently been reported that M062X/6-311++G(d,p) basis set is effectively better than that of B3LYP/6-311++G(d,p) for determining the interaction energies for any kind of long range interaction in aromatic systems. Therefore, all the calculations were carried out by using M062X/6-311++G(d,p) basis set. However, in most of the cases the calculated π-π stacking interaction energies show almost same result for both DFT and ab initio methods. 展开更多
关键词 PHENOLIC System π-π STACKING B3LYP m062x
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Na^+···3,4-二硝基吡唑…H_2O复合物分子间协同效应的理论研究 被引量:1
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作者 樊白娟 李斌 +1 位作者 赵光明 刘媛媛 《计算机与应用化学》 CAS 2017年第7期563-569,共7页
为探索3,4-二硝基吡唑高能熔铸炸药中分子…阳离子和阳离子…σ相互作用之间的关系,本论文借助M062X方法,在6-311++G(2d,p)基组水平上研究了Na^+…3,4-二硝基吡唑…H_2O三聚体协同效应,对其进行了分子间相互作用能和协同效应的计算与分... 为探索3,4-二硝基吡唑高能熔铸炸药中分子…阳离子和阳离子…σ相互作用之间的关系,本论文借助M062X方法,在6-311++G(2d,p)基组水平上研究了Na^+…3,4-二硝基吡唑…H_2O三聚体协同效应,对其进行了分子间相互作用能和协同效应的计算与分析,然后建立了分子间距离R(R_(ternary)-R_(binary))与~2ρ(▽~2ρBCP_(ternary)-▽~2ρBCP_(binary))的线性关系。结果表明,线状三聚体结构中发生了协同效应,而在环状结构中出现了反协同效应。分子间距离R(R_(ternary-)R_(binary))与~2ρ(▽~2ρBCP_(ternary)-▽~2ρBCP_(binary))具有良好的线性关系(R^2=0.992)。AIM(atoms in molecules)与电子云密度转移分析佐证了协同效应的存在。 展开更多
关键词 协同效应 3 4-二硝基吡唑 DFT-m062x 氢键
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