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Molecular Dynamic Simulation of Lattice Distortion Region Produced by Rounded Grain Boundary in Nanocrystalline Materials
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作者 XiaoweiWANG J.Rifkin 《Journal of Materials Science & Technology》 SCIE EI CAS CSCD 2002年第3期254-256,共3页
关键词 molecular dynamic simulation nanocrystalline distortion region
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Anisotropic plasticity of nanocrystalline Ti:A molecular dynamics simulation
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作者 安敏荣 宿梦嘉 +3 位作者 邓琼 宋海洋 王晨 尚玉 《Chinese Physics B》 SCIE EI CAS CSCD 2020年第4期368-378,共11页
Using molecular dynamics simulations,the plastic deformation behavior of nanocrytalline Ti has been investigated under tension and compression normal to the{0001},{1010},and{1210}planes.The results indicate that the p... Using molecular dynamics simulations,the plastic deformation behavior of nanocrytalline Ti has been investigated under tension and compression normal to the{0001},{1010},and{1210}planes.The results indicate that the plastic deformation strongly depends on crystal orientation and loading directions.Under tension normal to basal plane,the deformation mechanism is mainly the grain reorientation and the subsequent deformation twinning.Under compression,the transformation of hexagonal-close packed(HCP)-Ti to face-centered cubic(FCC)-Ti dominates the deformation.When loading is normal to the prismatic planes(both{1010}and{1210}),the deformation mechanism is primarily the phase transformation among HCP,body-centered cubic(BCC),and FCC structures,regardless of loading mode.The orientation relations(OR)of{0001}HCP||{111}FCC and<1210>HCP||<110>FCC,and{1010}HCP||{110}FCC and<0001>HCP||<010>FCC between the HCP and FCC phases have been observed in the present work.For the transformation of HCP→BCC→HCP,the OR is{0001}α1||{110}β||{1010}α2(HCP phase before the critical strain is defined as α1-Ti,BCC phase is defined as β-Ti,and the HCP phase after the critical strain is defined as α2-Ti).Energy evolution during the various loading processes further shows the plastic anisotropy of nanocrystalline Ti is determined by the stacking order of the atoms.The results in the present work will promote the in-depth study of the plastic deformation mechanism of HCP materials. 展开更多
关键词 molecular dynamics simulation nanocrystalline TI ANISOTROPIC PLASTICITY DEFORMATION mechanism
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Numerical distortion and effects of thermostat in molecular dynamics simulations of single-walled carbon nanotubes
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作者 李瑞 胡元中 +1 位作者 王慧 张宇军 《Chinese Physics B》 SCIE EI CAS CSCD 2008年第11期4253-4259,共7页
In this paper, single-walled carbon nanotubes (SWCNTs) are studied through molecular dynamics (MD) simulation. The simulations are performed at temperatures of 1 and 300K separately, with atomic interactions chara... In this paper, single-walled carbon nanotubes (SWCNTs) are studied through molecular dynamics (MD) simulation. The simulations are performed at temperatures of 1 and 300K separately, with atomic interactions characterized by the second Reactive Empirical Bond Order (REBO) potential, and temperature controlled by a certain thermostat, i.e. by separately using the velocity scaling, the Berendsen scheme, the Nose-Hoover scheme, and the generalized Langevin scheme. Results for a (5,5) SWCNT with a length of 24.5 nm show apparent distortions in nanotube configuration, which can further enter into periodic vibrations, except in simulations using the generalized Langevin thermostat, which is ascribed to periodic boundary conditions used in simulation. The periodic boundary conditions may implicitly be applied in the form of an inconsistent constraint along the axis of the nanotube. The combination of the inconsistent constraint with the cumulative errors in calculation causes the distortions of nanotubes. When the generalized Langevin thermostat is applied, inconsistently distributed errors are dispersed by the random forces, and so the distortions and vibrations disappear. This speculation is confirmed by simulation in the case without periodic boundary conditions, where no apparent distortion and vibration occur. It is also revealed that numerically induced distortions and vibrations occur only in simulation of nanotubes with a small diameter and a large length-to-diameter ratio. When MD simulation is applied to a system with a particular geometry, attention should be paid to avoiding the numerical distortion and the result infidelity. 展开更多
关键词 molecular dynamics simulation single-walled carbon nanotube (SWCNT) thermostat numerical distortions
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A Local Region Molecular Dynamics Simulation Method for Nanoscale Sliding Contacts
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作者 Rui-Ting Tong Geng Liu Tian-Xiang Liu 《Chinese Journal of Mechanical Engineering》 SCIE EI CAS CSCD 2018年第5期119-126,共8页
Computational e ciency and accuracy always conflict with each other in molecular dynamics(MD) simulations. How to enhance the computational e ciency and keep accuracy at the same time is concerned by each correspondin... Computational e ciency and accuracy always conflict with each other in molecular dynamics(MD) simulations. How to enhance the computational e ciency and keep accuracy at the same time is concerned by each corresponding researcher. However, most of the current studies focus on MD algorithms, and if the scale of MD model could be reduced, the algorithms would be more meaningful. A local region molecular dynamics(LRMD) simulation method which can meet these two factors concurrently in nanoscale sliding contacts is developed in this paper. Full MD simulation is used to simulate indentation process before sliding. A criterion called contribution of displacement is presented, which is used to determine the e ective local region in the MD model after indentation. By using the local region, nanoscale sliding contact between a rigid cylindrical tip and an elastic substrate is investigated. Two two?dimensional MD models are presented, and the friction forces from LRMD simulations agree well with that from full MD simulations, which testifies the e ectiveness of the LRMD simulation method for two?dimensional cases. A three?dimensional MD model for sliding contacts is developed then to show the validity of the LRMD simulation method further. Finally, a discussion is carried out by the principles of tribology. In the discussion, two two?dimensional full MD models are used to simulate the nanoscale sliding contact problems. The results indicate that original smaller model will induce higher equivalent scratching depth, and then results in higher friction forces, which will help to explain the mechanism how the LRMD simulation method works. This method can be used to reduce the scale of MD model in large scale simulations, and it will enhance the computational e ciency without losing accuracy during the simula?tion of nanoscale sliding contacts. 展开更多
关键词 Local region molecular dynamics simulation NANOSCALE Sliding contacts Contribution of displacement
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Enhanced Hydrogen Embrittlement Resistance via Cr Segregation in Nanocrystalline Fe-Cr Alloys
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作者 Linshuo Dong Feiyang Wang +7 位作者 Hong-Hui Wu Mengjie Gao Penghui Bai Shuize Wang Guilin Wu Junheng Gao Xiaoye Zhou Xinping Mao 《Acta Metallurgica Sinica(English Letters)》 SCIE EI CAS CSCD 2023年第12期1925-1935,共11页
Hydrogen is a clean fuel with numerous sources,yet the hydrogen industry is plagued by hydrogen embrittlement(HE)issues during the storage,transportation,and usage of hydrogen gas.HE can compromise material performanc... Hydrogen is a clean fuel with numerous sources,yet the hydrogen industry is plagued by hydrogen embrittlement(HE)issues during the storage,transportation,and usage of hydrogen gas.HE can compromise material performance during service,leading to significant safety hazards and economic losses.In the current work,the influence of element Cr on the HE resistance of nanocrystalline Fe-Cr alloys under different hydrogen concentrations and strain rates was evaluated.With hybrid Monte Carlo(MC)and molecular dynamics(MD)simulations,it was found that Cr atoms were segregated at grain boundaries(GB)and inhibited the GB decohesion.Correspondingly,Cr segregation improved the strength and plasticity of the nanocrystalline Fe-Cr alloys,especially the HE resistance.Moreover,the Cr segregation reduced the diffusion coefficient of hydrogen and inhibited hydrogen-induced cracking.This work provided new insight into the development of iron-based alloys with high HE resistance in the future. 展开更多
关键词 Hydrogen embrittlement molecular dynamics simulations Cr segregation Grain boundary nanocrystalline materials
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退火处理对Pt基块体金属玻璃塑性动力学行为的影响
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作者 易梦丽 王驰 +3 位作者 赖建平 李定骏 袁卫锋 余家欣 《力学学报》 EI CAS CSCD 北大核心 2024年第1期173-182,共10页
采用退火的热诱导方法向Pt基块体金属玻璃(Pt-BMG)基体内原位引入纳米晶,通过纳米压痕实验,考察了Pt-BMG在铸态和在玻璃转变温度Tg之上(250℃)退火15 min,2 h和6 h的力学性能和塑性动力学行为.研究结果表明,退火时间从15 min增加到6 h时... 采用退火的热诱导方法向Pt基块体金属玻璃(Pt-BMG)基体内原位引入纳米晶,通过纳米压痕实验,考察了Pt-BMG在铸态和在玻璃转变温度Tg之上(250℃)退火15 min,2 h和6 h的力学性能和塑性动力学行为.研究结果表明,退火时间从15 min增加到6 h时,Pt-BMG的结晶度从34%增加到57%,平均晶粒尺寸从25.6 nm增加到38.3 nm,硬度和折合模量分别从5.66 GPa和133.83 GPa增加到8.65 GPa和182.89 GPa,同时载荷-位移曲线上的锯齿流变行为呈现从可明显观察到不连续的位移突变到比较平滑的变化规律.通过分子动力学模拟进一步证明,随着纳米晶尺寸的增加,剪切转变区的激活与剪切带的成核呈现先促进后抑制、先增加后减小的趋势.这是由于金属玻璃在塑性变形过程中,小尺寸纳米晶会被剪切带所包裹或溶解,促进了金属玻璃塑性变形的形成;而大尺寸纳米晶在承受载荷时,在晶体内部产生了位错和滑移,进一步抑制了剪切带的成核与传播.本文结合纳米压痕实验和分子动力学模拟,从原子尺度上揭示了纳米晶的尺寸影响非晶合金塑性变形的内在机理,为设计理想性能的金属玻璃提供了有效的实验基础与理论支撑. 展开更多
关键词 退火 Pt基块体金属玻璃 塑性动力学 分子动力学模拟 纳米晶 剪切带
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Fe_(75)Cr_(12.5)Mo_(12.5)合金非晶/纳米晶化过程的分子动力学模拟
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作者 张光磊 赵媛媛 +2 位作者 付华 秦国强 冯文杰 《北京工业大学学报》 CAS CSCD 北大核心 2014年第5期733-737,共5页
为模拟Fe75Cr12.5Mo12.5合金非晶/纳米晶化的整个过程,采用分子动力学方法,通过动力学弛豫、淬火和退火处理得到了Fe75Cr12.5Mo12.5合金的非晶/纳米晶态结构.采用径向分布函数(radius distribution function,RDF)和X线衍射图(X-ray diff... 为模拟Fe75Cr12.5Mo12.5合金非晶/纳米晶化的整个过程,采用分子动力学方法,通过动力学弛豫、淬火和退火处理得到了Fe75Cr12.5Mo12.5合金的非晶/纳米晶态结构.采用径向分布函数(radius distribution function,RDF)和X线衍射图(X-ray diffraction,XRD),分析了模拟过程中各阶段的原子结构.结果表明:Fe75Cr12.5Mo12.5合金的非晶和纳米晶形成能力较强,添加非金属元素能进一步提高非晶形成能力.分子动力学模拟技术为铁基非晶/纳米晶的成分配比和工艺选择提供了理论依据. 展开更多
关键词 铁基非晶合金 纳米晶 分子动力学
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CCR5膜外二硫键Cys20-Cys269对其构象完整性以及功能行使起关键作用
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作者 柳树群 孙之荣 《北京大学学报(自然科学版)》 CAS CSCD 北大核心 2004年第4期518-526,共9页
人类化学趋化因子受体CCR5是HIV 1病毒进入人体细胞的主要辅助受体。实验表明 ,CCR5分子的N末端区域对化学趋化因子结合以及HIV病毒入侵起关键作用。用同源模建的方法构建CCR5结构模型 ,并对该模型的胞外结构域进行了 1ns高温分子动力学... 人类化学趋化因子受体CCR5是HIV 1病毒进入人体细胞的主要辅助受体。实验表明 ,CCR5分子的N末端区域对化学趋化因子结合以及HIV病毒入侵起关键作用。用同源模建的方法构建CCR5结构模型 ,并对该模型的胞外结构域进行了 1ns高温分子动力学和 2 0 0ps常温分子动力学模拟。结果表明 ,CCR5的胞外结构域整体上表现为一个包装紧密的球形构象 ,二硫键Cys2 0 Cys2 6 9对这一构象的形成以及N末端区域的空间取向起关键作用 ,同时 ,二硫键的存在使N末端1 1 9区域定位在胞外结构域的顶部 ,并增加N末端构象柔性 ,使其有机会伸展到胞外空间去。根据这一结果和现有的实验证据 ,提出了HIV CCR5两步结合机制。 展开更多
关键词 CCR5 分子动力学模拟 N末端区域 二硫键 HIV
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石墨烯/聚乙烯复合材料致密区间密度变化的分子动力学模拟 被引量:2
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作者 韦琦 黄君 黄立新 《功能材料》 EI CAS CSCD 北大核心 2020年第6期6100-6107,共8页
石墨烯增强复合材料的性能受到粘结界面,致密区间等多种因素的影响。如果没有考虑到这些因素的影响,在分析石墨烯增强复合材料时可能会导致错误的结果。本文采用分子动力学模拟的方法进行石墨烯/聚乙烯复合材料致密区间密度变化的分析... 石墨烯增强复合材料的性能受到粘结界面,致密区间等多种因素的影响。如果没有考虑到这些因素的影响,在分析石墨烯增强复合材料时可能会导致错误的结果。本文采用分子动力学模拟的方法进行石墨烯/聚乙烯复合材料致密区间密度变化的分析。首先对聚乙烯晶胞进行分子动力学计算,得到的聚乙烯晶胞密度为0.95 g/cm3,与聚乙烯实际密度吻合,然后运用该计算步骤进行石墨烯/聚乙烯复合材料的分子动力学模拟,最后通过切片的方法得出聚乙烯基体密度的变化趋势。模拟计算结果表明,石墨烯/聚乙烯复合材料的聚乙烯基体在石墨烯的作用下出现了致密的现象,在石墨烯两侧存在对称的致密区间,并且在石墨烯和聚乙烯之间存在范德华(Van der Waals)间隙,间隙的厚度为0.28 nm。致密区间中,远离石墨烯的聚乙烯密度为0.95 g/cm3,与常温常压下聚乙烯的密度一致;接近石墨烯的聚乙烯的密度出现1.5 g/cm3的峰值,是常温常压下聚乙烯密度的1.6倍。 展开更多
关键词 分子动力学模拟 石墨烯/聚乙烯复合材料 致密区间 密度
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循环加载条件下纳米晶铜的分子动力学模拟
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作者 杨宝童 周剑秋 +1 位作者 张峰 佟尚 《热加工工艺》 北大核心 2020年第6期33-36,共4页
使用分子动力学模拟(MD)来研究晶粒尺寸为5 nm的纳米晶Cu的疲劳行为。疲劳模拟是在±5%的应变幅度下进行5个周期的循环加载,分别模拟三种具有不同尺寸孔洞的样品。分子动力学模拟结果表明,循环加载下的变形行为主要是堆垛层错的部... 使用分子动力学模拟(MD)来研究晶粒尺寸为5 nm的纳米晶Cu的疲劳行为。疲劳模拟是在±5%的应变幅度下进行5个周期的循环加载,分别模拟三种具有不同尺寸孔洞的样品。分子动力学模拟结果表明,循环加载下的变形行为主要是堆垛层错的部分位错滑移。随着孔洞尺寸的增加,材料变形的主要机制从整个模型的剪切变形演变到主要在孔洞边缘引起的局部应力集中。MD模拟结果表明,应力-应变行为的特征是初始软化,其次是硬化,这种现象也与空洞的尺寸有关。 展开更多
关键词 分子动力学模拟 纳晶铜 孔洞 疲劳
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温度影响石墨烯/沥青复合材料界面微结构特征的分子动力学模拟 被引量:1
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作者 黄立新 周昆 +1 位作者 黄君 叶太智 《公路》 北大核心 2022年第9期349-356,共8页
采用分子动力学模拟方法研究了温度对石墨烯/沥青复合材料界面微结构特征的影响。选取沥青的4组分模型,进行分子动力学模拟,得到合理的沥青玻璃化转换温度。然后加入石墨烯,共同搭建石墨烯/沥青复合材料模型并进行分子动力学模拟。在此... 采用分子动力学模拟方法研究了温度对石墨烯/沥青复合材料界面微结构特征的影响。选取沥青的4组分模型,进行分子动力学模拟,得到合理的沥青玻璃化转换温度。然后加入石墨烯,共同搭建石墨烯/沥青复合材料模型并进行分子动力学模拟。在此基础上,基于复合材料切片的相对浓度,定义界面区间的范德华间隙和致密区间。根据复合材料相对浓度曲线,计算得到范德华间隙厚度,然后采用统计学方法,得到沥青基体累计浓度以及一阶导数的曲线,计算得到致密区间厚度。在各种温度条件下,通过分子动力学模拟得到石墨烯/沥青复合材料界面区间范德华间隙和致密区间的厚度。研究结果表明,温度对致密区间厚度影响较小,而对范德华间隙厚度影响较大;并且在玻璃化转换温度之前随着温度升高范德华间隙厚度波动下降,玻璃化转换温度之后随温度升高范德华间隙厚度逐步增大。 展开更多
关键词 石墨烯改性沥青 分子动力学模拟 范德华间隙 致密区间 温度影响
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基于分子动力学模拟的铜锆晶体/非晶双相纳米复合材料力学行为 被引量:3
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作者 李卫卫 宋海洋 +2 位作者 安敏荣 汉芮岐 马佳丽 《复合材料学报》 EI CAS CSCD 北大核心 2021年第12期4239-4246,共8页
金属玻璃因其较差的室温塑性限制了其广泛应用,因此提升金属玻璃的力学性能、探明金属玻璃的变形机制已经成为当前材料领域的研究热点。采用分子动力学方法研究了晶粒尺寸和分布对晶体/非晶B2-CuZr/CuZr双相复合材料力学行为的影响。研... 金属玻璃因其较差的室温塑性限制了其广泛应用,因此提升金属玻璃的力学性能、探明金属玻璃的变形机制已经成为当前材料领域的研究热点。采用分子动力学方法研究了晶粒尺寸和分布对晶体/非晶B2-CuZr/CuZr双相复合材料力学行为的影响。研究结果表明,随着纳米晶粒的尺寸增大,复合材料变形模式发生了从相对均匀变形到单一剪切带的局部变形的转变。研究指出,增大纳米晶粒尺寸/体积分数能有效提高复合材料的峰值应力,但除了较小尺寸纳米晶粒模型外,双相复合材料的塑性没有明显增强。此外,相对于交叉排列,纳米晶粒的对齐排列导致了更严重的塑性应变局部化。本文的研究结果对于设计和制备高性能的金属玻璃材料具有重要的参考价值和指导意义。 展开更多
关键词 分子动力学模拟 力学行为 金属玻璃 形状记忆合金 纳米晶粒
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基于柔性区域的计算设计改造玉米赤霉烯酮水解酶热稳定性 被引量:4
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作者 陈权 吕成 许菲 《生物工程学报》 CAS CSCD 北大核心 2021年第12期4415-4429,共15页
来源于粉红螺旋聚孢霉Clonostachys rosea的玉米赤霉烯酮水解酶(ZHD101)可以有效降解谷物农副产品和饲料中的霉菌毒素玉米赤霉烯酮(Zearalenone,ZEN),但是,该酶的热稳定性较低,限制了其在工业中的应用。由于水解ZEN的反应没有吸光值的变... 来源于粉红螺旋聚孢霉Clonostachys rosea的玉米赤霉烯酮水解酶(ZHD101)可以有效降解谷物农副产品和饲料中的霉菌毒素玉米赤霉烯酮(Zearalenone,ZEN),但是,该酶的热稳定性较低,限制了其在工业中的应用。由于水解ZEN的反应没有吸光值的变化,不适合高通量筛选。本文以ZHD101为模式酶,进行计算虚拟突变并结合实验验证。通过比对不同温度下的分子动力学模拟轨迹,选取32个柔性位点;再通过位置特异性评分和酶构象自由能计算,从32个柔性位点上的608个虚拟饱和突变体中筛选出12个突变体。经实验验证,其中3个突变体N156F、S194T和T259F的热熔融温度有一定程度的提升(ΔT_(m)>4℃),且酶活性与野生型类似甚至更高(相对酶活性为95.8%、131.6%和169.0%)。分子动力学模拟分析显示,导致3个突变体热稳定性提高的可能作用机理分别为NH-π作用力、盐桥重排和分子表面空穴填充。将3个突变体进行迭代组合突变,N156F/S194T表现出最高的热稳定性(ΔT_(m)=6.7℃)。这项工作表明基于柔性区域的虚拟饱和突变在酶稳定性改造上的可行性,探索计算虚拟改造结合实验验证的酶改造策略。 展开更多
关键词 玉米赤霉烯酮水解酶 柔性区域 蛋白质计算设计 分子动力学模拟 虚拟饱和突变
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Theoretical study on Janus graphene oxide membrane for water transport
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作者 Quan Liu Mingqiang Chen +1 位作者 Yangyang Mao Gongping Liu 《Frontiers of Chemical Science and Engineering》 SCIE EI CAS CSCD 2021年第4期913-921,共9页
Graphene oxide(GO)membranes have received considerable attention owing to their outstanding water-permeation properties;however,the effect of the membrane’s microstructures(such as the distribution of oxidized and pr... Graphene oxide(GO)membranes have received considerable attention owing to their outstanding water-permeation properties;however,the effect of the membrane’s microstructures(such as the distribution of oxidized and pristine regions)on the transport mechanism remains unclear.In this study,we performed molecular simulations to explore the permeation of a water-ethanol mixture using a new type of Janus GO membranes with different orientations of oxidized and pristine surfaces.The results indicate that the oxidized upper surface endows the GO membrane with considerable water-capture capability and the in-built oxidized interlayer promotes the effective vertical diffusion of water molecules.Consequently,using the optimized Janus GO membrane,infinite water selectivity and outstanding water flux(-40.9 kg·m^(-2) h^(-1))were achieved.This study contributes to explaining the role of oxidized regions in water permeation via GO membranes and suggests that Janus GO membranes could be used as potential candidates for water-ethanol separation. 展开更多
关键词 graphene oxide membrane molecular dynamics simulation water permeation water-ethanol separation oxidized and pristine regions
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