Quantitative structure activity relationship （QSAR） studies were performed on 45 anthranilic acid derivatives for their potent allosteric inhibition activities of HCV NSSB polymerase. Genetic algorithm based genetic...Quantitative structure activity relationship （QSAR） studies were performed on 45 anthranilic acid derivatives for their potent allosteric inhibition activities of HCV NSSB polymerase. Genetic algorithm based genetic function approximation （GFA） method of variable selection was used to generate the model. Highly statistically significant model with r^2 = 0.966 and r^2cv = 0.951 was obtained when the number of descriptors in the equation was set to 5. High r^2pred value of 0.884 indicates the good predictive power of the best model. Spatial descriptors of radius of gyration （RadOfGration）, molecular volume （Vm）, length of molecule in the z dimension （Shadow-Zlength）, thermodynamic descriptors of the octanol/water partition coefficient （LogP） and molecular refractivity index （MR） showed enormous contributions to HCV NS5B polymerase inhibition. The validation of the model was done by leave-one-out （LOO） test, randomization tests and external test set prediction. The model gives insight on indispensable structural requirements for the activity and can be used to design more potent analogs against HCV NSSB polymerase.展开更多
丙型肝炎病毒（hepatitis C virus,HCV）是引起慢性肝炎并进而发展为肝硬化和肝细胞癌的主要病原体之一。目前,临床上采用α-干扰素（IFN-α）和利巴韦林（RBV）联合用药治疗丙型肝炎,但有效率仅为40%~50%。寻找HCV特定靶向抗病毒治疗...丙型肝炎病毒（hepatitis C virus,HCV）是引起慢性肝炎并进而发展为肝硬化和肝细胞癌的主要病原体之一。目前,临床上采用α-干扰素（IFN-α）和利巴韦林（RBV）联合用药治疗丙型肝炎,但有效率仅为40%~50%。寻找HCV特定靶向抗病毒治疗药物是抗HCV研究的重要方向,相应靶点包括NS2和NS3蛋白酶,NS4A、NS4B、NS5A和NS5B,其中以NS5B RNA依赖性RNA聚合酶（NS5B RdRp）为靶标的抗HCV药物研究近年来颇受关注。本文在介绍NS5B及NS5B RdRp结构和功能的基础上,总结归纳以NS5B RdRp为靶点的HCV特定靶向抗病毒治疗药物研究的主要策略,以及近年来相关NS5BRdRp抑制剂的研究进展。展开更多
Hepatitis C virus(HCV) affects 3% of the world population. It represents the main cause of chronic liver disease and is responsible for extra-hepatic complications, such as type 2 diabetes and cardiovascular diseases....Hepatitis C virus(HCV) affects 3% of the world population. It represents the main cause of chronic liver disease and is responsible for extra-hepatic complications, such as type 2 diabetes and cardiovascular diseases. HCV includes 7 genotypes differing in the nucleotide sequence variability, the geographic distribution, the rates of viral clearance, the risk of progression to liver fibrosis and to hepatocellular carcinoma, and the response to therapy. Last years have seen remarkable advances in the field of HCV infection with the approval of direct antiviral agents(DAAs) targeting key viral proteins involved in the HCV replication. Several oral regimens combining DAAs from different families have been developed and these regimens showed increased and sustained virological response rates to above 90% reducing the treatment duration to 12 wk or less. In particular, sofosbuvir, a nucleotide analogue nonstructural(NS)5B polymerase inhibitor, and velpatasvir, a NS5 A inhibitor, have been tested in two phase 3 trials, the ASTRAL-2(against HCV genotype 2) and the ASTRAL-3(against HCV genotype 3), demonstrating to be effective, safe, and well tolerated in patients who were 18 years of age or older and had at least a 6-mo history of HCV infection with a compensated liver disease.展开更多
利用分子全息技术研究了129个5-羧基苯并咪唑类HCV NS5B聚合酶抑制剂的结构与活性之间的关系.讨论了分子碎片大小、碎片区分参数及全息长度对模型质量的影响.利用偏最小二乘法(partial least square,PLS)建立了一组以99个化合物为训练...利用分子全息技术研究了129个5-羧基苯并咪唑类HCV NS5B聚合酶抑制剂的结构与活性之间的关系.讨论了分子碎片大小、碎片区分参数及全息长度对模型质量的影响.利用偏最小二乘法(partial least square,PLS)建立了一组以99个化合物为训练集的最优模型,该模型的交叉验证相关系数q^2=0.820,非交叉验证相关系数r^2=0.963,标准偏差SEE=0.213;用最优模型对由30个化合物组成的测试集进行预测,得到其相关系数r_(pred)~2=0.98,表明了该模型具有良好的预测能力及拟合能力.利用色码图对模型中不同原子及不同结构的贡献进行了解释,在此基础上根据最优HQSAR模型设计了几种具有良好抗HCV活性的苯并咪唑类HCV NS5B聚合酶抑制剂分子,为新型HCV NS5B聚合酶抑制剂的设计和优化提供了参考.展开更多
丙型肝炎病毒(hepatitis C virus,简称HCV)编码的多聚酶NS5B是丙肝病毒RNA复制的必需酶,已成为抗丙肝药物设计的有效靶标.基于HCV NS5B多聚酶的活性位点需要结合二价金属离子作为催化辅因子的机理,含有金属螯合模段的喹诺酮酸骨架被合...丙型肝炎病毒(hepatitis C virus,简称HCV)编码的多聚酶NS5B是丙肝病毒RNA复制的必需酶,已成为抗丙肝药物设计的有效靶标.基于HCV NS5B多聚酶的活性位点需要结合二价金属离子作为催化辅因子的机理,含有金属螯合模段的喹诺酮酸骨架被合理用来发现新结构的非核苷HCV抑制剂.根据喹诺酮酸抑制剂与NS5B多聚酶的结合模式,我们第一次设计在喹诺酮酸的2-位引入疏水基团,同时调节N-1,C-3和C-7位的取代基结构,运用我们发展的一锅煮新方法合成了结构多样的喹诺酮酸衍生物,并运用HCV体外感染实验系统进行抗病毒活性的评估,我们开展了系统的构效关系研究,发现了新结构类型的非核苷HCV抑制剂.这些2-芳基-1-环丙基/烯丙基喹诺酮酸衍生物在低浓度(μmol?L-1)下能有效抑制HCV病毒在宿主细胞Huh7.5.1的复制,并具有2~6倍的安全窗口,有进一步优化成抗HCV候选药物的潜力.展开更多
基金supported by the National Natural Science Foundation of China (No. 30500339)Natural Science Foundation of Zhejiang Province (NO.Y407308)the Sprout Talented Project Program of Zhejiang Province (No. 2008R40G2020019)
文摘Quantitative structure activity relationship （QSAR） studies were performed on 45 anthranilic acid derivatives for their potent allosteric inhibition activities of HCV NSSB polymerase. Genetic algorithm based genetic function approximation （GFA） method of variable selection was used to generate the model. Highly statistically significant model with r^2 = 0.966 and r^2cv = 0.951 was obtained when the number of descriptors in the equation was set to 5. High r^2pred value of 0.884 indicates the good predictive power of the best model. Spatial descriptors of radius of gyration （RadOfGration）, molecular volume （Vm）, length of molecule in the z dimension （Shadow-Zlength）, thermodynamic descriptors of the octanol/water partition coefficient （LogP） and molecular refractivity index （MR） showed enormous contributions to HCV NS5B polymerase inhibition. The validation of the model was done by leave-one-out （LOO） test, randomization tests and external test set prediction. The model gives insight on indispensable structural requirements for the activity and can be used to design more potent analogs against HCV NSSB polymerase.
文摘Hepatitis C virus(HCV) affects 3% of the world population. It represents the main cause of chronic liver disease and is responsible for extra-hepatic complications, such as type 2 diabetes and cardiovascular diseases. HCV includes 7 genotypes differing in the nucleotide sequence variability, the geographic distribution, the rates of viral clearance, the risk of progression to liver fibrosis and to hepatocellular carcinoma, and the response to therapy. Last years have seen remarkable advances in the field of HCV infection with the approval of direct antiviral agents(DAAs) targeting key viral proteins involved in the HCV replication. Several oral regimens combining DAAs from different families have been developed and these regimens showed increased and sustained virological response rates to above 90% reducing the treatment duration to 12 wk or less. In particular, sofosbuvir, a nucleotide analogue nonstructural(NS)5B polymerase inhibitor, and velpatasvir, a NS5 A inhibitor, have been tested in two phase 3 trials, the ASTRAL-2(against HCV genotype 2) and the ASTRAL-3(against HCV genotype 3), demonstrating to be effective, safe, and well tolerated in patients who were 18 years of age or older and had at least a 6-mo history of HCV infection with a compensated liver disease.
文摘丙型肝炎病毒(hepatitis C virus,简称HCV)编码的多聚酶NS5B是丙肝病毒RNA复制的必需酶,已成为抗丙肝药物设计的有效靶标.基于HCV NS5B多聚酶的活性位点需要结合二价金属离子作为催化辅因子的机理,含有金属螯合模段的喹诺酮酸骨架被合理用来发现新结构的非核苷HCV抑制剂.根据喹诺酮酸抑制剂与NS5B多聚酶的结合模式,我们第一次设计在喹诺酮酸的2-位引入疏水基团,同时调节N-1,C-3和C-7位的取代基结构,运用我们发展的一锅煮新方法合成了结构多样的喹诺酮酸衍生物,并运用HCV体外感染实验系统进行抗病毒活性的评估,我们开展了系统的构效关系研究,发现了新结构类型的非核苷HCV抑制剂.这些2-芳基-1-环丙基/烯丙基喹诺酮酸衍生物在低浓度(μmol?L-1)下能有效抑制HCV病毒在宿主细胞Huh7.5.1的复制,并具有2~6倍的安全窗口,有进一步优化成抗HCV候选药物的潜力.
