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莱鲍迪甙C高效转化细菌Paenarthrobacter ilicis CR5301全基因组测序及关键糖苷酶分析 被引量:2
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作者 李洪飞 孙大庆 曹龙奎 《食品科学》 EI CAS CSCD 北大核心 2022年第18期166-175,共10页
为全面了解Paenarthrobacter ilicis CR5301的遗传背景,深入解析CR5301转化莱鲍迪甙C(rebaudioside C,RC)的关键酶,采用二代Illumina HiSeq和三代Nanopore相结合的测序方法,对CR5301进行全基因组测序和关键酶预测分析。结果显示,CR5301... 为全面了解Paenarthrobacter ilicis CR5301的遗传背景,深入解析CR5301转化莱鲍迪甙C(rebaudioside C,RC)的关键酶,采用二代Illumina HiSeq和三代Nanopore相结合的测序方法,对CR5301进行全基因组测序和关键酶预测分析。结果显示,CR5301基因组为1个闭合环状染色体DNA分子,不含质粒,基因组序列全长4748281 bp,GC含量62.92%,共编码4458个基因,同时含有4个基因岛、1个前噬菌体和14个CRISPR-Cas编码序列。CR5301是P.ilicis物种第1个测定基因组完成图的菌株,也是Paenarthrobacter菌属已知基因组最大的菌株。基因组共线性分析和16S rRNA基因系统进化树分析结果一致表明,P.ilicis CR5301与P.aurescens具有更近的亲缘关系,而与P.ureafaciens的亲缘关系较远。7个蛋白质数据库综合注释分析发现,P.ilicis CR5301基因组共含有523个碳水化合物活性酶基因,其中18个糖苷酶基因可能是CR5301转化RC的关键酶基因。最后,通过ProtParam、SOPMA生物信息学软件,预测了18个糖苷酶的物化性质和二级结构。这些结果为CR5301的RC转化机制研究提供了清晰、完整的遗传信息,并且为P.ilicis物种广泛的生物学研究提供了完整、可靠的参考基因组序列,对今后P.ilicis物种生物学研究具有重要的参考价值和普遍的借鉴意义。 展开更多
关键词 微生物转化 莱鲍迪甙C paenarthrobacter ilicis CR5301 基因组 糖苷酶
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Isolation and Characterization of A High-efficiency Atrazine-degrading Strain Paenarthrobacter ureafaciens ZF1
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作者 Zhang Zhi-fei Ding Ming-yue +1 位作者 Fu Qian Liu Rong-mei 《Journal of Northeast Agricultural University(English Edition)》 CAS 2022年第4期39-49,共11页
The widely use of atrazine causes great threat to the environment.Microbial degradation is an effective method to quickly remove atrazine to maintain environmental safety.A bacterial strain,ZF1,capable of highly degra... The widely use of atrazine causes great threat to the environment.Microbial degradation is an effective method to quickly remove atrazine to maintain environmental safety.A bacterial strain,ZF1,capable of highly degrading atrazine which could grow with atrazine as both carbon and nitrogen sources,was isolated from the wheat field soil in Henan Province,China.Phenotypic characterization and 16S rRNA gene sequencing indicated that the isolate belonged to the Paenarthrobacter ureafaciens.Polymerase chain reaction(PCR)analysis revealed that ZF1 contained the atrazine-degrading genes trzN,atzB and atzC.The growth and atrazinedegradation efficiency of strain ZF1 had broad ranges of temperature(5℃-50℃)and pH(5.0-11.0),and had a high tolerance to atrazine and could tolerate at least 1500 mg·L^(-1).The addition of carbon and nitrogen sources promoted the degradation rate of atrazine to a certain extent.When the strain was cultured with starch as carbon sources,the degradation rate of atrazine could reach 50 mg·L^(-1)·h^(-1).In general,the discovery of strain ZF1 enriched the resources of atrazine degrading strains.Its excellent biodegradability and environmental tolerance showed that strain ZF1 had great potential in the bioremediation of atrazine contaminated sites in the future. 展开更多
关键词 ATRAZINE paenarthrobacter ureafaciens ZF1 BIODEGRADATION
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