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Construction of chimeric viruses based on pepper mild mottle virus using a modiffed Cre/loxP system
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作者 YIN Yue-yan HUA Meng-ying +9 位作者 ZHAO Kuang-jie WAN Qiong-lian BU Shan LU Yu-wen ZHENG Hong-ying RAO Shao-fei YAN Fei PENG Jie-jun CHEN Hai-ru CHEN Jian-ping 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2022年第8期2456-2463,共8页
Cre/loxP,a site-specific recombination system,has been widely used for various purposes,including chromosomal translocations,generation of marker-free transgenic plants,tissue-specific activation of a reporter gene an... Cre/loxP,a site-specific recombination system,has been widely used for various purposes,including chromosomal translocations,generation of marker-free transgenic plants,tissue-specific activation of a reporter gene and efficient heterologous gene expression in plants.However,stable or transient expression of Cre recombinase in plants can cause chlorosis or necrosis.Here,we describe a modified Cre/loxP recombination system using a DNA fragment flanked with loxP sites in the same orientation in which necrosis induced by Cre recombinase in Nicotiana benthamiana leaves was alleviated.The modified system was successfully used to create functional GFP-tagged pepper mild mottle virus(PMMoV)and a chimeric virus with coat protein(CP)substitution assembled from separate pro-vector modules.Our results provide a new strategy and flexible technique to construct chimeric virus and infectious clones for plant viruses with large genomes. 展开更多
关键词 pepper mild mottle virus Cre/loxP NECROSIS infectious cDNA clone chimeric virus
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Indoor Inoculation and Identification Technology of Sweet (Hot) Pepper Virus
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作者 Yan Libin Fan Yanqin +1 位作者 Sun Yingtao Lou Xiaoli 《Plant Diseases and Pests》 CAS 2013年第3期4-8,共5页
[Objective] The paper was to establish an affordable indoor virus inoculation and identification technology. [Method] Taking Tobacco Mosaic Virus (TMV) and Cucumber Mosaic Vires (CMV) of sweet (hot) pepper as th... [Objective] The paper was to establish an affordable indoor virus inoculation and identification technology. [Method] Taking Tobacco Mosaic Virus (TMV) and Cucumber Mosaic Vires (CMV) of sweet (hot) pepper as the sources of virus, an affordable indoor virus inoculation and identification technology was developed in the paper. [ Result] The suitable inoculation concentration of CMV was five to ten times, and the best seedling age for inoculation was five to six leav- es. Suitable inoculation concentration of TMV was 20 to 30 times, and the best seedling age for inoculation was three to six leaves. Single inoculation technology was mainly used for indoor virus inoculation and identification of sweet (hot) pepper, and complex inoculation technology could also be adopted with first, st inoculation of CMV and late inoculation of TMV. For mixed inoculation technology, CMV: TMV should be 1: 1. Complex inoculation and mix inoculation should base on the tech- nology of single inoculation. Disease resistant materials, AID1-W22-dg176, ABgl-W22-48123, AB91-DL-6428, HY031-2-8-1-6, BYT-4-1-3-6-8, JFG-2-1-2-6, JF8S-1-1-5-4-8 and I'502-1-1-3-5, were identified by this method. [ Conclusion] This research provided scientific basis for standardization of indoor inoculation of sweet (hot) pepper virus. 展开更多
关键词 Sweet (hot) pepper CMV TMV virus Indoor inoculation
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Genome characterization of the Caprine arthritis-encephalitis virus in China:A retrospective genomic analysis of the earliest Chinese isolates
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作者 WANG Deng-feng YANG Xue-yun +6 位作者 WEI Yu-rong LI Jian-jun BOLATI Hongduzi MENG Xiao-xiao TUERXUN Gunuer NUERDAN Nuerbaiheti WU Jian-yong 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第3期872-880,共9页
Caprine arthritis-encephalitis virus(CAEV) is an under-studied virus infecting caprines and ovines worldwide. Over the last four decades, CAEV has spread in China, obtaining genomic data on CAEV strains circulating in... Caprine arthritis-encephalitis virus(CAEV) is an under-studied virus infecting caprines and ovines worldwide. Over the last four decades, CAEV has spread in China, obtaining genomic data on CAEV strains circulating in China is of importance for developing diagnostic methods and eradicating associated diseases. However, there is limited information on the genome, including characterizations, and the probable origin. This work aimed to characterize Chinese CAEV genomes and population structures. Five CAEV strains isolated from infected dairy goats between 1989and 1994 in Gansu, Guizhou, Shaanxi, Shandong and Sichuan provinces were cloned and sequenced. The Chinese CAEV had a 58–93% genome similarities to strains outside of China, and they belonged to subgenotype B1. The highest similarity levels(98.3–99.3%) were with two other Chinese strains, and they shared a 91.8–92.3% similarity with the strain Clements(GenBank accession no. NC_001463.1) from outside of China. The Chinese CAEV strains isolated from different provinces over five years were still highly homologous and contained unique ancestral population components,indicating that these Chinese strains had a common origin that differed from other known strains. Our results provide genomic data on circulating Chinese CAEV strains and will be useful for future epidemiological investigations and CAEV eradication programs. 展开更多
关键词 Caprine arthritis-encephalitis virus GENOTYPE phylogenetic analysis population structure SIMILARITY dairy goat
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Hepatotropic viruses:Is Roma population at risk?
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作者 Anna Mrzljak Lucija Bajkovec Tatjana Vilibic-Cavlek 《World Journal of Gastroenterology》 SCIE CAS 2021年第2期143-151,共9页
Roma people make up a significant ethnic minority in many European countries,with the vast majority living in Central and Eastern Europe.Roma are a vulnerable population group in social,economic,and political terms.Fr... Roma people make up a significant ethnic minority in many European countries,with the vast majority living in Central and Eastern Europe.Roma are a vulnerable population group in social,economic,and political terms.Frequent migrations,life in segregated communities,substandard housing,poverty,and limited access to quality health care,including low immunization coverage,affect their health status and predispose them to various diseases,including viral hepatitis.Hepatitis A,B,and E are highly prevalent among Roma and mainly associated with low socioeconomic status.In contrast,hepatitis C does not seem to be more frequent in the Roma population.Enhanced efforts should be directed towards the implementation of screening programs,preventive measures,and treatment of viral hepatitis in Roma communities throughout Europe. 展开更多
关键词 Roma population Hepatitis A virus Hepatitis B virus Hepatitis C virus Hepatitis E virus EUROPE
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High-throughput RNA interference screens integrative analysis: Towards a comprehensive understanding of the virus-host interplay 被引量:9
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作者 Sandeep Amberkar Narsis A Kiani +2 位作者 Ralf Bartenschlager Gualtiero Alvisi Lars Kaderali 《World Journal of Virology》 2013年第2期18-31,共14页
Viruses are extremely heterogeneous entities; the size and the nature of their genetic information, as well as the strategies employed to amplify and propagate their genomes, are highly variable. However, as obligator... Viruses are extremely heterogeneous entities; the size and the nature of their genetic information, as well as the strategies employed to amplify and propagate their genomes, are highly variable. However, as obligatory intracellular parasites, replication of all viruses relies on the host cell. Having co-evolved with their host for several million years, viruses have developed very sophisticated strategies to hijack cellular factors that promote virus uptake, replication, and spread. Identification of host cell factors(HCFs) required for these processes is a major challenge for researchers, but it enables the identification of new, highly selective targets for anti viral therapeutics. To this end, the establishment of platforms enabling genome-wide high-throughput RNA interference(HT-RNAi) screens has led to the identification of several key factors involved in the viral lifecycle. A number of genome-wide HT-RNAi screens have been performed for major human pathogens. These studies enable first inter-viral comparisons related to HCF requirements. Although several cellular functions appear to be uniformly required for the life cycle of most viruses tested(such as the proteasome and the Golgi-mediated secretory pathways), some factors, like the lipid kinase Phosphatidylinositol 4-kinase Ⅲα in the case of hepatitis C virus, are selectively required for individual viruses. However, despite the amount of data available, we are still far away from a comprehensive understanding of the interplay between viruses and host factors. Major limitations towards this goal are the low sensitivity and specificity of such screens, resulting in limited overlap between different screens performed with the same virus. This review focuses on how statistical and bioinformatic analysis methods applied to HTRNAi screens can help overcoming these issues thus increasing the reliability and impact of such studies. 展开更多
关键词 RNA interference HIGH-THROUGHPUT Cell population Dependency factors Bioinformatics Human immunodeficiency virus Hepatitis C virus DENGUE virus Viral infection virus-host interactions
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Epidemiology of hepatitis B virus in Bangladeshi general population 被引量:4
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作者 Mamun-Al Mahtab Salimur Rahman +4 位作者 Md.Fazal Karim Mobin Khan Graham Foster Susannah Solaiman Shahrin Afroz 《Hepatobiliary & Pancreatic Diseases International》 SCIE CAS 2008年第6期595-600,共6页
BACKGROUND:Hepatitis B virus(HBV)is encountered sporadically the year round in Bangladesh.It results in a wide range of liver diseases,with asymptomatic acute hepatitis at one end to hepatocellular carcinoma(HCC)at th... BACKGROUND:Hepatitis B virus(HBV)is encountered sporadically the year round in Bangladesh.It results in a wide range of liver diseases,with asymptomatic acute hepatitis at one end to hepatocellular carcinoma(HCC)at the other end of the spectrum. METHODS:All 1018 individuals of different age groups and sex with varied religious,educational and social backgrounds were tested for HBsAg by ELISA.The positive samples were further tested by ELISA for HBeAg.Before testing,blood samples were preserved at-20℃.The study was conducted in a semi-urban location on the outskirts of Dhaka. RESULTS:Of the 1018 individuals,5.5%tested positive for HBsAg.None were tested positive for anti-HCV.Among the HBsAg-positive population,58.93%were HBeAg- positive and the rest 41.07%HBeAg-negative.There was a male predominance and those who were tested positive were mostly between 16 and 50 years of age.Major risk factors for exposure to HBV appeared to be injudicious use of injectable medications,treatment by unqualified, traditional practitioners,mass-vaccination against cholera and smallpox,barbers and body piercing. CONCLUSION:HBV remains a major cause of morbidity and mortality in Bangladesh and we have a long way to go before we may bid farewell to this deadly menace. 展开更多
关键词 hepatitis B virus PREVALENCE general population Banglandesh
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Enigmatic origin of hepatitis B virus:An ancient travelling companion or a recent encounter? 被引量:3
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作者 Gianguglielmo Zehender Erika Ebranati +5 位作者 Elena Gabanelli Chiara Sorrentino Alessra Lo Presti Elisabetta Tanzi Massimo Ciccozzi Massimo Galli 《World Journal of Gastroenterology》 SCIE CAS 2014年第24期7622-7634,共13页
Hepatitis B virus(HBV)is the leading cause of liver disease and infects an estimated 240 million people worldwide.It is characterised by a high degree of genetic heterogeneity because of the use of a reverse transcrip... Hepatitis B virus(HBV)is the leading cause of liver disease and infects an estimated 240 million people worldwide.It is characterised by a high degree of genetic heterogeneity because of the use of a reverse transcriptase during viral replication.The ten genotypes(A-J)that have been described so far further segregate into a number of subgenotypes which have distinct ethno-geographic distribution.Genotypes A and D are ubiquitous and the most prevalent genotypes in Europe(mainly represented by subgenotypes D1-3 and A2);genotypes B and C are restricted to eastern Asia and Oceania;genotype E to central and western Africa;and genotypes H and F(classified into 4 subgenotypes)to Latin America and Alaska.This review summarises the data obtained by studying the global phylodynamics and phylogeography of HBV genotypes,particularly those concerning the origin and dispersion histories of genotypes A,D,E and F and their subgenotypes.The lack of any consensus concerning the HBV substitution rate and the conflicting data obtained using different calibration approaches make the time of origin and divergence of the various genotypes and subgenotypes largely uncertain.It is hypothesised that HBV evolutionary rates are time dependent,and that the changes depend on the main transmission routes of the genotypes and the dynamics of the infected populations. 展开更多
关键词 HEPATITIS B virus GENOTYPES and subgenotypes Phylo
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Prevalence of West Nile virus in Mashhad,Iran:A population-based study
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作者 Zahra Meshkat Sadegh Chinikar +6 位作者 Mohammad Taghi Shakeri Lida Manavifar Maryam Moradi Hessam Mirshahabi Tahmineh Jalali Sahar Khakifirouz Nariman Shahhosseini 《Asian Pacific Journal of Tropical Medicine》 SCIE CAS 2015年第3期203-205,共3页
Objective:To evaluate the prevalence of West Nile virus seropositivity in the general population of Mashhad.Northeast of Iran.Methods:One hundred and eighty two individuals living in the city of Mashhad were studied u... Objective:To evaluate the prevalence of West Nile virus seropositivity in the general population of Mashhad.Northeast of Iran.Methods:One hundred and eighty two individuals living in the city of Mashhad were studied using cluster sampling method.Both IgM and IgG antibodies against WNV were detected by ELISA method.Results:In this study,the overall IgG seroprevalence of positive West Nile virus was 11%;however.IgM antibody was not found in the participants.Conclusions:Our study suggested that the prevalence rate of West virus is considerable in Mashhad city.It seems necessary for clinicians and health care workers to be aware of WNV infection in the Northeast Iran. 展开更多
关键词 WEST NILE virus PREVALENCE POPULATION Iran
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Epidemiology of hepatitis E virus in Iran
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作者 Reza Taherkhani Fatemeh Farshadpour 《World Journal of Gastroenterology》 SCIE CAS 2016年第22期5143-5153,共11页
Iran is known as an endemic country for hepatitis E virus(HEV) infection, while there are variations in the epidemiology of HEV infection throughout the country. The available epidemiological studies in different regi... Iran is known as an endemic country for hepatitis E virus(HEV) infection, while there are variations in the epidemiology of HEV infection throughout the country. The available epidemiological studies in different regions of Iran show HEV seroprevalence of 1.1%-14.2% among general population, 4.5%-14.3% among blood donors, 6.1%-22.8% among injecting drug users, 6.3%-28.3% among hemodialysis patients, 1.6%-11.3% among patients infected with other hepatitis viruses, 27.5% among patients with chronic liver disease, 30.8% among kidney transplant recipient patients, and 10%-16.4% among human immunodeficiency virus-infected patients. These variations reflect differences in the status of public health and hygiene, risk factors, and routes of transmission in different regions and groups. Therefore, it is necessary to review the epidemiology of HEV infection to determine the most prevalent risk factors and routes of transmission, and to evaluate the effectiveness of preventive strategies employed in the public health services of the country. Moreover, the other epidemiological aspects of HEV, including the genotypic pattern, extra hepatic manifestations, and incidence of chronic infection need to be investigated among Iranian population to expand the current knowledge on the epidemiology of HEV and to clarify the real burden of HEV infection. Therefore, this review was performed to provide a general overview regarding the epidemiology of HEV in Iran. 展开更多
关键词 HEPATITIS E virus General population Blood DONORS INJECTING drug users HEMODIALYSIS IMMUNOCOMPROMISE
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Comment on review article:Chronic hepatitis C virus infection cascade of care in pediatric patients
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作者 Nouhoum Bouare Mamadou Keita Jean Delwaide 《World Journal of Gastroenterology》 SCIE CAS 2022年第14期1494-1498,共5页
An enhanced cascade of care should include a younger population,helping to achieve the goal of the World Health Organization with a focus on elimination in the pediatric population.Furthermore,enhanced screening and a... An enhanced cascade of care should include a younger population,helping to achieve the goal of the World Health Organization with a focus on elimination in the pediatric population.Furthermore,enhanced screening and awareness efforts and continued education of health care providers will improve the outcomes of chronic hepatitis C virus(HCV)infection in the pediatric population.The present work discusses and comments on the topic"cascade of care in HCV chronic pediatric patients". 展开更多
关键词 Cascade of care Hepatitis C virus Chronic patients Pediatric population Disease management COMMENTARY
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Hepatitis C virus among blood donors and general population in Middle East and North Africa:Meta-analyses and meta-regressions
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作者 Sarwat Mahmud Hiam Chemaitelly +2 位作者 Ahmed S Alaama Joumana G Hermez Laith Abu-Raddad 《World Journal of Meta-Analysis》 2022年第1期12-24,共13页
BACKGROUND Despite the Middle East and North Africa(MENA)Region reported to have the highest prevalence of hepatitis C virus(HCV)globally,HCV infection levels in the majority of MENA countries remain inadequately char... BACKGROUND Despite the Middle East and North Africa(MENA)Region reported to have the highest prevalence of hepatitis C virus(HCV)globally,HCV infection levels in the majority of MENA countries remain inadequately characterized.Blood donor data have been previously used as a proxy to assess levels and trends of HCV in the general population,however,it is unclear how comparable these populations are in MENA and whether blood donors provide an appropriate proxy.AIM To delineate HCV epidemiology among blood donors and the general population in the MENA.METHODS The data source was the systematically gathered MENA HCV Epidemiology Synthesis Project Database.Random-effects meta-analyses and meta-regressions were conducted.For comparison,analyses were conducted for Europe,utilizing the Hepatitis C Prevalence Database of the European Centre for Disease Prevention and Control.RESULTS One thousand two hundred and thirteen HCV antibody prevalence measures and 84 viremic rate measures were analyzed for MENA.Three hundred and seventyseven antibody prevalence measures were analyzed for Europe.In MENA,pooled mean prevalence was 1.58%[95%confidence interval(CI):1.48%–1.69%]among blood donors and 4.49%(95%CI:4.10%–4.90%)in the general population.In Europe,pooled prevalence was 0.11%(95%CI:0.10%–0.13%)among blood donors and 1.59%(95%CI:1.25%–1.97%)in the general population.Prevalence in the general population was 1.72-fold(95%CI:1.50–1.97)higher than that in blood donors in MENA,but it was 15.10-fold(95%CI:11.48–19.86)higher in Europe.Prevalence was declining at a rate of 4%per year in both MENA and Europe[adjusted risk ratio:0.96(95%CI:0.95–0.97)in MENA and 0.96(95%CI:0.92–0.99)in Europe].Pooled mean viremic rate in MENA was 76.29%(95%CI:67.64%–84.02%)among blood donors and 65.73%(95%CI:61.03%–70.29%)in the general population.CONCLUSION Blood donor data provide a useful proxy for HCV infection in the wider population in MENA,but not Europe,and could improve HCV burden estimations and assess progress toward HCV elimination by 2030. 展开更多
关键词 Hepatitis C virus Viral hepatitis Blood donors General population Middle East and North Africa META-ANALYSIS META-REGRESSION
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Lurking epidemic of hepatitis C virus infection in Iran: A call to action 被引量:4
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作者 Reza Taherkhani Fatemeh Farshadpour 《World Journal of Hepatology》 CAS 2017年第24期1040-1042,共3页
Despite having a relatively low prevalence in the Iranian general population, the burden of hepatitis C virus(HCV) infection is on the rise, and hepatitis C is predicted to be the most important leading cause of viral... Despite having a relatively low prevalence in the Iranian general population, the burden of hepatitis C virus(HCV) infection is on the rise, and hepatitis C is predicted to be the most important leading cause of viral hepatitis-related mortality in the near future in Iran. The recent population-based epidemiological studies have revealed the predominant role of injecting drug use in increasing prevalence of HCV infection. Undoubtedly, new management paradigm is required to drive down the rising wave of hepatitis C in Iran. Priority should be given to young injecting drug users as the cornerstone of the lurking epidemic of HCV infection in Iran. 展开更多
关键词 一般人口 注射药用户 传染病学 丙肝病毒 伊朗
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Human leukocyte antigen-DP loci are associated with the persistent infection of hepatitis B virus in Chinese population 被引量:1
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作者 LING Yun LIAO Xiang-Wei +10 位作者 LI Xin-Hua HAN Yue YANG Zhi-Tao KONG Xiao-Fei GU Lei-Lei YU De-Ming YAO Bi-Lian ZHANG Dong-Hua JIN Gen-Di GONG Qi-Ming ZHANG Xin-Xin 《微生物与感染》 2012年第1期18-27,共10页
A genome-wide association study recently showed that genetic variants in human leukocyte antigen (HLA)-DP loci were strongly associated with a risk of persistent infection of hepatitis B virus (HBV) in Japanese and Th... A genome-wide association study recently showed that genetic variants in human leukocyte antigen (HLA)-DP loci were strongly associated with a risk of persistent infection of hepatitis B virus (HBV) in Japanese and Thai individuals and variants in interleukin 28B (IL-28B) have been associated with responses to anti-hepatitis C virus (HCV) treatment. The aim of this study was to investigate whether the HLA-DP loci and IL-28B were associated with different outcomes of chronic HBV infection (CHB) in Chinese subjects. The rs9277535 near HLA-DPB1,rs3077 near HLA-DPA1, and rs12979860 near IL-28B were genotyped by direct sequencing in 185 CHB patients and 193 self-limited hepatitis B virus (SLHBV)-infected subjects who recovered from HBV infection. The rs9277535 near HLA-DPB1 was strongly associated with CHB (P=0.000 018 1, OR=1.905). This association was observed independent of HBV e antigen (HBeAg) status and HBV viral loads in HBeAg-positive CHB patients (P=0.000 4, OR=1.956), in HBeAg-negative CHB patients (P=0.000 9, OR=1.857), and in HBeAg-negative CHB individuals without detectable levels of HBV DNA in serum (P=0.001 1, OR=2.05). The rs3077 near HLA-DPA1 was associated with CHB (P=0.020 6, OR=0.686 5) and HBeAg-positive CHB infection status (P=0.014 3, OR=0.604 7). Meanwhile, a genetic variation of insertion-deletion (INDEL) polymorphism (rs361527, -/ATAAATGTTGA) near HLA-DPA1 was found to be associated with CHB (P=0.030 7, OR=0.702 8) and HBeAg-positive CHB infection status (P=0.023 3, OR=0.619). However,the rs12979860 genotype near IL-28B had no correlation with CHB. This study demonstrated that in the Han Chinese populations, HLA-DP loci, but not IL-28B, were associated with persistence of infection in different outcomes of HBV-infected patients; however, the mechanism needs to be further investigated. 展开更多
关键词 摘要 编辑部 编辑工作 读者
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不同药剂处理对辣椒病毒病防效试验研究
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作者 刘发万 李卫芬 +6 位作者 桂敏 冯鹏飞 徐家文 陈国发 郑丽萍 吴征 周杉 《长江蔬菜》 2024年第2期74-76,共3页
为筛选出辣椒病毒病的有效防治药剂,开展了辣椒病毒病防治药剂筛选试验。结果表明,施用维大力健有机水溶肥(灌根:5 kg/667 m^(2))+维大力康微量元素水溶肥800倍液、5%氨基寡糖素水剂1000倍液、8%宁南霉素水剂1200倍液、30%毒氟磷可湿性... 为筛选出辣椒病毒病的有效防治药剂,开展了辣椒病毒病防治药剂筛选试验。结果表明,施用维大力健有机水溶肥(灌根:5 kg/667 m^(2))+维大力康微量元素水溶肥800倍液、5%氨基寡糖素水剂1000倍液、8%宁南霉素水剂1200倍液、30%毒氟磷可湿性粉剂1200倍液能有效防治辣椒病毒病,防控率均在60%以上;维大力健有机水溶肥+维大力康微量元素水溶肥、5%氨基寡糖素水剂1000倍液、8%宁南霉素水剂1200倍液、30%毒氟磷可湿性粉剂1200倍液可为云南辣椒病毒病防治首选药剂,生产上该4种方式可交替使用。 展开更多
关键词 辣椒 病毒病 药剂 筛选
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非HIV感染人群肺隐球菌病29例临床特征分析
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作者 郭玲玲 周洪 刘娜 《实用临床医学(江西)》 CAS 2024年第3期1-5,F0004,共6页
目的 总结非人类免疫缺陷病毒(HIV)感染人群肺隐球菌病的临床特点和诊治方法,提高临床医师对该病的认识和诊治水平。方法 回顾性分析2016—2021年江西省人民医院确诊的29例非HIV人群肺隐球菌病的临床资料,包括临床症状、实验室检查、肺... 目的 总结非人类免疫缺陷病毒(HIV)感染人群肺隐球菌病的临床特点和诊治方法,提高临床医师对该病的认识和诊治水平。方法 回顾性分析2016—2021年江西省人民医院确诊的29例非HIV人群肺隐球菌病的临床资料,包括临床症状、实验室检查、肺部影像学资料及治疗、转归情况。结果 29例患者中男21例,女8例,中位年龄为56.5岁。基础疾病情况:肾移植术后5例(5/29),自身免疫系统疾病9例(9/29),糖尿病2(2/29),脾切除1例(1/29),无任何相关基础疾病12例(12/29)。首发症状常见为:咳嗽10例(10/29)、胸痛6例(6/29)、发热5例(5/29);肺部影像表现为结节肿块型19例,浸润型10例,混和型3例。29例患者气管镜灌洗液隐球菌荚膜多糖抗原检测阳性24例(24/29),外周血隐球菌荚膜多糖抗原阳性20例(20/29),脑脊液隐球菌荚膜多糖抗原阳性3例(3/29)。29例患者通过气管镜灌洗及活检确诊8例,手术切除确诊6例,经皮肺穿刺活组织检查确诊5例,另外10例通过血清学及治疗后随访临床确诊。29例患者均按照指南规范治疗,疗程6~12个月不等,治愈25例,失败4例(其中3例为免疫缺陷宿主,1例因经济原因放弃治疗)。结论 非HIV人群肺隐球菌病临床症状不典型,需重视血清学的隐球菌荚膜多糖抗原检测,必要时需要行电子气管镜、经皮肺穿刺等有创检查明确诊断,经过规范治疗大多数患者预后良好。 展开更多
关键词 肺真菌病 隐球菌肺炎 非HIV人群
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Evolutionary dynamics of the severe acute respiratory syndrome coronavirus 2 genomes
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作者 Zhaohui Qian Pei Li +1 位作者 Xiaolu Tang Jian Lu 《Medical Review》 2022年第1期3-22,共20页
The coronavirus disease 2019(COVID-19)pandemic has caused immense losses in human lives and the global economy and posed significant challenges for global public health.As severe acute respiratory syndrome coronavirus... The coronavirus disease 2019(COVID-19)pandemic has caused immense losses in human lives and the global economy and posed significant challenges for global public health.As severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),the causative agent of COVID-19,has evolved,thousands of single nucleotide variants(SNVs)have been identified across the viral genome.The roles of individual SNVs in the zoonotic origin,evolution,and transmission of SARS-CoV-2 have become the focus of many studies.This review summarizes recent comparative genomic analyses of SARS-CoV-2 and related coronaviruses(SC2r-CoVs)found in non-human animals,including delineation of SARS-CoV-2 lineages based on characteristic SNVs.We also discuss the current understanding of receptor-binding domain(RBD)evolution and characteristic mutations in variants of concern(VOCs)of SARS-CoV-2,as well as possible co-evolution between RBD and its receptor,angiotensin-converting enzyme 2(ACE2).We propose that the interplay between SARS-CoV-2 and host RNA editing mechanisms might have partially resulted in the bias in nucleotide changes during SARS-CoV-2 evolution.Finally,we outline some current challenges,including difficulty in deciphering the complicated relationship between viral pathogenicity and infectivity of different variants,and monitoring transmission of SARS-CoV-2 between humans and animals as the pandemic progresses. 展开更多
关键词 molecular evolution population genetics severe acute respiratory syndrome coronavirus 2 VARIANT virus.
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CMV通过影响效应因子MpC002的表达干预桃蚜种群增长的机制
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作者 毛立杰 梁晓 +3 位作者 刘迎 伍春玲 韩晓燕 陈青 《生物技术通报》 CAS CSCD 北大核心 2024年第4期271-277,共7页
【目的】桃蚜是CMV的重要传毒媒介,效应因子MpC002在桃蚜取食寄主过程中发挥关键作用,CMV和MpC002均存在于蚜虫唾液中,但两者如何相互作用从而利于病毒传播知之甚少。为探讨CMV影响MpC002表达干预桃蚜种群增长的机制。【方法】利用绝对... 【目的】桃蚜是CMV的重要传毒媒介,效应因子MpC002在桃蚜取食寄主过程中发挥关键作用,CMV和MpC002均存在于蚜虫唾液中,但两者如何相互作用从而利于病毒传播知之甚少。为探讨CMV影响MpC002表达干预桃蚜种群增长的机制。【方法】利用绝对定量的qPCR法建立CMV拷贝数检测的标准曲线方程y=-3.1631x+39.763。【结果】桃蚜取食CMV感染辣椒10 s体内CMV含量最高,然后随着取食时间的延长CMV含量不断降低,其获毒过程符合非持久性传毒特征。取食CMV感染辣椒5 min-24 h的桃蚜MpC002表达量显著降低至取食前的37%-58%;取食CMV感染辣椒的3龄、4龄若蚜和1-4龄若蚜的平均发育历期分别为1.58 d、2.07 d和6.47 d,显著长于取食未处理辣椒的1.25 d、1.47 d和5.33 d,但1龄和2龄若蚜发育历期在CMV感染辣椒和未处理辣椒间无显著差异;平均产蚜期、总产蚜量和单日平均产蚜量分别为10.03 d、16.87头和1.67头,显著短于取食未处理辣椒桃蚜的14.27 d,39.73头和2.82头;净增殖率、内禀增长率、周限增长率分别为16.87、0.21、1.24,均显著低于取食未处理辣椒桃蚜的39.73、0.31、1.36,平均世代周期(13.02 d)和种群加倍时间(3.26 d)均显著长于取食未处理辣椒桃蚜的12.00 d和2.30 d。【结论】CMV能显著抑制桃蚜MpC002的表达,从而延长其发育历期和降低其繁殖,最终抑制其种群的增长。 展开更多
关键词 CMV 辣椒 桃蚜 效应因子MpC002 种群增长
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辣椒重组自交系群体果实和叶形性状的遗传分析
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作者 陈大青 戴云花 +3 位作者 毛莲珍 孙浩 周瑶 刘周斌 《中国蔬菜》 北大核心 2024年第2期38-45,共8页
通过朝天椒D71和甜椒D72组合构建辣椒重组自交系(recombiant inbred line,RIL),测定2种不同生长环境下RIL群体的单果质量、果长、果肩宽、果宽、果实硬度、果肉厚、果柄粗、叶宽和叶长共9个性状,分析其遗传规律。结果表明,多数性状在2... 通过朝天椒D71和甜椒D72组合构建辣椒重组自交系(recombiant inbred line,RIL),测定2种不同生长环境下RIL群体的单果质量、果长、果肩宽、果宽、果实硬度、果肉厚、果柄粗、叶宽和叶长共9个性状,分析其遗传规律。结果表明,多数性状在2种生长环境下的偏度系数和峰度系数的绝对值均小于1,表明这些性状具有典型的数量性状特征,说明群体各性状受多基因控制的影响。各性状变异系数平均值为16.73%~52.06%,其中单果质量的变异系数平均值最大,为52.06%,而叶长最小,仅为16.73%。群体性状遗传力范围为42.03%~51.21%,其中果实多个性状间均呈显著或极显著正相关,而果实硬度与其他性状呈显著或极显著负相关。在不同生长环境下,群体在E1下性状表现力要好于E2,变异现象分析说明该RIL群体内部有丰富的遗传变异,遗传力分析表明辣椒果实性状受到基因型和环境型共同作用的影响,且受环境型影响略高于基因型影响。RIL群体在2种生长环境下的各性状分布均呈正态分布或近似正态分布,这些性状属于典型的数量性状遗传。以上结果可为辣椒新品种的选育提供参考。 展开更多
关键词 辣椒 RIL群体 果实性状 叶形性状 遗传分析
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Evolutionary study of hepatitis C virus envelope genes during primary infection 被引量:1
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作者 CHEN Song WANG Yu-ming 《Chinese Medical Journal》 SCIE CAS CSCD 2007年第24期2174-2180,共7页
Background Hepatitis C virus (HCV) envelope genes encoding glycoproteins E1 and E2 exhibits a high degree of variability that gives rise to differing phenotypic traits; including alterations in receptor-binding affi... Background Hepatitis C virus (HCV) envelope genes encoding glycoproteins E1 and E2 exhibits a high degree of variability that gives rise to differing phenotypic traits; including alterations in receptor-binding affinity and immune recognition and escape. This study aims to elucidate the relationship of the evolutionary patterns for HCV envelope glycoproteins to viral persistence. Methods HCV quasispecies were characterized in specimens collected every two to six months from a cohort of acutely HCV-infected subjects. We evaluated two individuals who spontaneously cleared viremia and three individuals with persistent viremia by cloning 33 1-kb amplicons that spanned E1 and the 5' half of E2; including hypervariable region 1 (HVR1). To detect representative variants for sequencing thirty-three cloned cDNAs representing each specimen were assessed by a method that combined analysis of a single-stranded conformational polymorphism (SSCP) method and heteroduplex analysis (HDA). For each patient, the rates of both synonymous and nonsynonymous substitutions for the El, HVR1 and E2 regions outside HVR1 were evaluated. The amino acid sequences and predicted antigenic profiles were analyzed. Results The genetic diversity within HVR1 was consistently higher than that in the E1 and E2 regions outside HVR1 in individuals with persistent viremia, but did not change markedly over time in those with clearance of viremia. For individuals with persistent viremia, the rate of nonsynonymous substitutions within the HVR1 region predominated and gradually increased, compared to that in the E1 and E2 regions outside HVR1. By contrast, the rates of both nonsynonymous and synonymous substitutions for the E1 and E2 regions, including HVR1, were consistently lower in individuals with clearance of viremia. HVR1 had a higher antigenic variable and lower positive charge in subjects with persistent viremia. All cysteine residues and N-linked glycosylation sites, some of which were known to play a major role in protein folding and others play a role in HCV entry, were 100% conserved among the sequenced cloned cDNAs from the two outcome groups. Conclusion HCV persistence may be associated with positive selection pressures on HVR1, rather than functional constraints in the envelope reaion. 展开更多
关键词 hepatitis C virus QUASISPECIES ENVELOPE population dynamics
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Canine distemper virus as a threat to wild tigers in Russia and across their range 被引量:2
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作者 Martin GILBERT Svetlana V.SOUTYRINA +6 位作者 Ivan V.SERYODKIN Nadezhda SULIKHAN Olga V.UPHYRKINA Mikhail GONCHARUK Louise MATTHEWS Sarah CLEAVELAND Dale G.MIQUELLE 《Integrative Zoology》 SCIE CSCD 2015年第4期329-343,共15页
Canine distemper virus(CDV)has recently been identified in populations of wild tigers in Russia and India.Tiger populations are generally too small to maintain CDV for long periods,but are at risk of infections arisin... Canine distemper virus(CDV)has recently been identified in populations of wild tigers in Russia and India.Tiger populations are generally too small to maintain CDV for long periods,but are at risk of infections arising from more abundant susceptible hosts that constitute a reservoir of infection.Because CDV is an additive mortality factor,it could represent a significant threat to small,isolated tiger populations.In Russia,CDV was associated with the deaths of tigers in 2004 and 2010,and was coincident with a localized decline of tigers in Sikhote-Alin Biosphere Zapovednik(from 25 tigers in 2008 to 9 in 2012).Habitat continuity with surrounding areas likely played an important role in promoting an ongoing recovery.We recommend steps be taken to assess the presence and the impact of CDV in all tiger range states,but should not detract focus away from the primary threats to tigers,which include habitat loss and fragmentation,poaching and retaliatory killing.Research priorities include:(i)recognition and diagnosis of clinical cases of CDV in tigers when they occur;and(ii)collection of baseline data on the health of wild tigers.CDV infection of individual tigers need not imply a conservation threat,and modeling should complement disease surveillance and targeted research to assess the potential impact to tiger populations across the range of ecosystems,population densities and climate extremes occupied by tigers.Describing the role of domestic and wild carnivores as contributors to a local CDV reservoir is an important precursor to considering control measures. 展开更多
关键词 canine distemper virus conservation threat EXTINCTION Panthera tigris altaica population decline
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