A Bibliometric Analysis Unveils Valuable Insights into the Past,Present,and Future Dynamics of Plant Acclimation to Temperature

Plant temperature acclimation is closely related to maintaining a positive carbon gain under future climate change.However,no systematic summary of the field has been conducted.Based on this,we analyzed data on plant temperature acclimation from the Web of Science Core Collection database using bibliometric software R,RStudio and VOSviewer.Our study demonstrated that a stabilized upward trajectory was noted in publications(298 papers)from 1986 to 2011,followed by a swift growth(373 papers)from 2012 to 2022.The most impactful journals were Plant Cell and Environment,boasting the greatest count of worldwide citations and articles,the highest H-index and G-index,followed by Global Change Biology and New Phytologist,and Frontiers in Plant Science which had the highest M-index.The USA and China were identified as the most influential countries,while Atkin was the most influential author,and the Chinese Academy of Sciences was the most influential research institution.The most cited articles were published in the Annual Review of Plant Biology in 1999.“Cold acclimation”was the most prominent keyword.Future plant temperature acclimation research is expected to focus on thermal acclimation and photosynthesis,which have important significance for future agricultural production,forestry carbon sequestration,and global food security.In general,this study provides a systematic insight of the advancement,trend,and future of plant temperature acclimation research,enhancing the comprehension of how plants will deal with forthcoming climate change.

Signaling Components Involved in Plant Responses to Phosphate Starvation

Phosphorus is one of the macronutrients essential for plant growth and development. Many soils around the world are deficient in phosphate （Pi） which is the form of phosphorus that plants can absorb and utilize. To cope with the stress of Pi starvation, plants have evolved many elaborate strategies to enhance the acquisition and utilization of Pi from the environment. These strategies include morphological, biochemical and physiological responses which ultimately enable plants to better survive under low Pi conditions. Though these adaptive responses have been well described because of their ecological and agricultural importance, our studies on the molecular mechanisms underlying these responses are still in their infancy. In the last decade, significant progresses have been made towards the identification of the molecular components which are involved in the control of plant responses to Pi starvation. In this article, we first provide an overview of some major responses of plants to Pi starvation, then summarize what we have known so far about the signaling components involved in these responses, as well as the roles of sugar and phytohormones.

Molecular mechanisms governing plant responses to high temperatures

The increased prevalence of high temperatures （HTs） around the world is a major global concern, as they dramatically affect agronomic productivity. Upon HT exposure, plants sense the temperature change and initiate cellular and metabolic responses that enable them to adapt to their new environmental conditions.Decoding the mechanisms by which plants cope with HT will facilitate the development of molecular markers to enable the production of plants with improved thermotolerance. In recent decades, genetic, physiological, molecular, and biochemical studies have revealed a number of vital cellular components and processes involved in thermoresponsive growth and the acquisition of thermo- tolerance in plants. This review summarizes the major mechanisms involved in plant HT responses, with a special focus on recent discoveries related to plant thermosensing, heat stress signaling, and HT-regulated gene expression networks that promote plant adaptation to elevated environmental temperatures.

Reactive oxygen species signaling and stomatal movement in plant responses to drought stress and pathogen attack

Stomata, the pores formed by a pair of guard cells, are the main gateways for water transpiration and photosynthetic CO2 exchange, as well as pathogen invasion in land plants. Guard cell movement is regulated by a combination of environmental factors, including water status, light, CO2 levels and pathogen attack, as well as endogenous signals, such as abscisic acid and apoplastic reactive oxygen species （ROS）. Under abiotic and biotic stress conditions, extracellular ROS are mainly produced by plasma membrane-localized NADPH oxidases, whereas intracellular ROS are produced in multiple organelles. These ROS form a sophisticated cellular signaling network, with the accumulation of apoplastic ROS an early hallmark of stomatal movement. Here, we review recent progress in understanding the molecular mechanisms of the ROS signaling network, primarily during drought stress and pathogen attack. We summarize the roles of apoplastic ROS in regulating stomatal movement, ABA and CO2 signaling, and immunity responses. Finally, we discuss ROS accumulation and communication between organelles and cells. This information provides a conceptual framework for understanding how ROS signaling is integrated with various signaling pathways during plant responses to abiotic and biotic stress stimuli.

WRKY transcription factors in plant responses to stresses

The WRKY gene family is among the largest families of transcription factors （TFs） in higher plants. By regulating the plant hormone signal transduction pathway, these TFs play critical roles in some plant processes in response to biotic and abiotic stress, Various bodies of research have demonstrated the important biological functions of WRKY TFs in plant response to different kinds of biotic and abiotic stresses and working mecha- nisms. However, very li2ttle summarization has been done to review their research progress. Not iust important TFs function in plant response to biotic and abiotic stresses, WRKY also participates in carbohydrate synthesis, senes- cence, development, and secondary metabolites synthesis. WRKY proteins can bind to W-box （TGACC （A/T）） in the promoter of its target genes and activate or repress the expression of downstream genes to regulate their stress response. Moreover, WRKY proteins can interact with other TFs to regulate plant defensive responses. In the present review, we focus on the structural characteristics of WRKY TFs and the research progress on their functions in plant responses to a variety of stresses.

Future challenges in understanding ROS in plant responses to abiotic stress

Plants must cope with a variety of environmental stresses. Most types of abiotic stresses, such as drought, salinity, flooding, heat and cold stress, disrupt the metabolic balance of cells, resulting in the enhanced production of reactive oxygen species （ROS）. While being well-known as a toxic by-product, recent studies about ROS focus on their roles as signaling molecules.

Varied responses to copper for plant regeneration from calli of different rice varieties

Enrichment of copper to the culture mediumcould enhance the plant regeneration from cal-lus of indica rice variety Qiugui’ai 11. Westudied the effect of copper on plant regenera-tion of other rice varieties.Calli of 14 indica and 2 japonica varietieswere induced from disinfected mature embryoson an agar-gelled medium containing Nbasal

Enhanced Ultraviolet-B Radiation Suppresses Magnaporthe oryzae Infection and Alleviates Its Damage to the Photosynthesis of Rice Leaves

In the present study,an indoor potting experiment was conducted to study the effects of enhanced UV-B radiation and Magnaporthe oryzae on the growth,stomatal structure,photosynthesis,and endogenous hormone contents of a traditional rice cultivar Baijiaolaojing in the Yuanyang terraces of Yunnan Province.In addition,the relationships between these parameters and disease indices were analyzed.We aimed to clarify the response of the photosynthetic physiology of rice under the combined stress of UV-B radiation and M.oryzae.Compared with the M.oryzae infection treatment,all the treatments,including M.oryzae infection before(MBR),simultaneously with(MSR),and after(MAR)UV-B radiation significantly increased the rice height and biomass by 4%–11%and 30%–111%,respectively,and the stomatal structure and carotenoids content of leaves,while decreasing the contents of chlorophyll a and b,by 21%–41%and 63%–73%,respectively.Both the MSR and MBR treatments significantly increased the photosynthetic rate and transpiration rate of rice leaves.The MAR treatment weakened chlorophyll fluorescence parameters,including the actual photosystem II(PS II)photochemical efficiency,electron transport rate,photochemical quenching,and nonphotochemical quenching by 40%,39%,43%,and 24%,respectively.Moreover,the treatments of MAR,MSR,and MBR decreased the phytohormones content and the M.oryzae disease index by 27%–62%in rice leaves.Thus,the enhanced UV-B radiation contributed to suppressing the M.oryzae infection and alleviating its damage to the photosynthesis of rice leaves.This study is valuable for the control of rice blast fungus and offers important insights into plant pathology.

Physiological and Biochemical Response of Artificial Wetland Plant under Electric Field

By measuring wetland plants chlorophyll content,malondialdehyde(MDA) content and superoxide dismutase(SOD) enzyme activity,the changes of wetland plant physiological characeristics under different power strength were studied,and the mechanism of electric field on plant physiological characteristics was analyzed to provide a theoretical basis for the pollutant removal ability strengthening of artificial wetland under electricfield.The results showed that compared with the control plants,low-intensity-voltage(1 V and 3 V) had no significant effect on the normal physiological and biochemical indexes of the plants,and the growth trend was better than the control group;with the voltage increasing,plant chlorophyll content,MDA content and SOD activity were greatly affected,indicating that plants were under strong oxidative stress,and the growth was damaged.Therefore,a suitable electric field could enhance the sewage treatment effect of constructed wetland.

Stress Knowledge Map:A knowledge graph resource for systems biology analysis of plant stress responses

Stress Knowledge Map(SKM;https://skm.nib.si)is a publicly available resource containing two complementary knowledge graphs that describe the current knowledge of biochemical,signaling,and regulatory molecular interactions in plants:a highly curated model of plant stress signaling(PSS;543 reactions)and a large comprehensive knowledge network(488390 interactions).Both were constructed by domain experts through systematic curation of diverse literature and database resources.SKM provides a single entry point for investigations of plant stress response and related growth trade-offs,as well as interactive explorations of current knowledge.PSS is also formulated as a qualitative and quantitative model for systems biology and thus represents a starting point for a plant digital twin.Here,we describe the features of SKM and show,through two case studies,how it can be used for complex analyses,including systematic hypothesis generation and design of validation experiments,or to gain new insights into experimental observations in plant biology.

Decomposition of dynamic transcriptomic responses during effector-triggered immunity reveals conserved responses in two distinct plant cell populations

Rapid plant immune responses in the appropriate cells are needed for effective defense against pathogens.Although transcriptome analysis is often used to describe overall immune responses,collection of transcriptome data with sufficient resolution in both space and time is challenging.We reanalyzed public Arabidopsis time-course transcriptome data obtained after low-dose inoculation with a Pseudomonas syringae strain expressing the effector AvrRpt2,which induces effector-triggered immunity in Arabidopsis.Double-peak time-course patterns are prevalent among thousands of upregulated genes.We implemented a multicompartment modeling approach to decompose the double-peak pattern into two single-peak patterns for each gene.The decomposed peaks reveal an“echoing”pattern:the peak times of the first and second peaks correlate well across most upregulated genes.We demonstrated that the two peaks likely represent responses of two distinct cell populations that respond either cell autonomously or indirectly to AvrRpt2.Thus,the peak decomposition has extracted spatial information from the time-course data.The echoing pattern also indicates a conserved transcriptome response with different initiation times between the two cell populations despite different elicitor types.A gene set highly overlapping with the conserved gene set is also upregulated with similar kinetics during pattern-triggered immunity.Activation of a WRKY network via different entry-point WRKYs can explain the similar but not identical transcriptome responses elicited by different elicitor types.We discuss potential benefits of the properties of the WRKY activation network as an immune signaling network in light of pressure from rapidly evolving pathogens.

Eureka lemon zinc finger protein ClDOF3.4 interacts with citrus yellow vein clearing virus coat protein to inhibit viral infection

Citrus yellow vein clearing virus(CYVCV)is a new citrus virus that has become an important factor restricting the development of China’s citrus industry,and the CYVCV coat protein(CP)is associated with viral pathogenicity.In this study,the Eureka lemon zinc finger protein(ZFP)ClDOF3.4 was shown to interact with CYVCV CP in vivo and in vitro.Transient expression of ClDOF3.4 in Eureka lemon induced the expression of salicylic acid(SA)-related and hypersensitive response marker genes,and triggered a reactive oxygen species burst,ion leakage necrosis,and the accumulation of free SA.Furthermore,the CYVCV titer in ClDOF3.4 transgenic Eureka lemon plants was approximately 69.4%that in control plants 6 mon after inoculation,with only mild leaf chlorotic spots observed in those transgenic plants.Taken together,the results indicate that ClDOF3.4 not only interacts with CP but also induces an immune response in Eureka lemon by inducing the SA pathways.This is the first report that ZFP is involved in the immune response of a citrus viral disease,which provides a basis for further study of the molecular mechanism of CYVCV infection.

Alterations of Endogenous Hormonal Levels in Plants under Drought and Salinity

The phytohormones are pivotal chemical messengers produced within the plant that regulate its growth and development, and responses to environmental stimuli. Drought and salinity are adverse environmental factors that disturb the plant hormonal balance. Accordingly, these hormonal fluctuations modify the cellular dynamic and hence they play a central role in regulating plant growth responses to abiotic stresses such as drought and salinity. The present review gives an update about the alterations of endogenous phytohormones such as abscisic acid (ABA), auxins (Aux), cytokinins (CKs), ethylene (ET), gibberellins (GAs), jasmonates (JAs), salicylic acid (SA), brassinosteroids (BRs), strigolactones (SLs) and nitric oxide (NO) that occur as part of the adaptative responses of plant against drought and salt stresses. Better understanding of the endogenous hormonal changes during the plant response to both abiotic stresses will contribute, in part, to the development of stress-tolerant plants.

Distinct Morpho-Physiological Responses of Maize to Salinity Stress

Most plants demonstrate wide interactive and complex adaptive morphological, biochemical, and physiological responses when subjected to salinity stress. Salt stress negatively impacts agricultural yields more especially cultivated crops throughout the world. Of interest to this study is maize a salt- sensitive crop that is widely grown worldwide, and receiving most attention due to its significant attributes and ability to serve as a great model for stress response studies. We exposed QN701 maize cultivar, to simulated salinity stress and investigated its morphological and physiological responses. Salinity negatively induced various morphological responses such as the reduction in plant height, number of leaves, shoot and root (length and biomass), and leaf width;however, it significantly increased the leaf area. On the physiological aspect, salt stress decreased the number of stomata, stomatal density, and photosynthesis, while it increased the respiration rate. This study expanded our knowledge of the morphological and physiological responses of maize to salinity stress. Additionally, these findings may serve as a recommendation for salinity breeding programs in maize and related cereal crops.

Phosphatidic acid plays key roles regulating plant development and stress responses

Phospholipids, including phosphatidic acid （PA）, phosphatidylcholine （PC）, phosphatidylethanolamine （PE）, phosphatidylglycerol （PC）, phosphatidylserine （PS） and phosphoinositides, have emerged as an important class of cellular messenger molecules in various cellular and physiological processes, of which PA attracts much attention of researchers. In addition to its effect on stimulating vesicle trafficking, many studies have demonstrated that PA plays a crucial role in various signaling pathways by binding target proteins and regulating their activity and subcellular localization. Here, we summarize the functional mechanisms and target proteins underlying PA-mediated regulation of cellular signaling, development, hormonal responses, and stress responses in plants.

TRAF proteins as key regulators of plant development and stress responses

Tumor necrosis factor receptor-associated factor(TRAF)proteins are conserved in higher eukaryotes and play key roles in transducing cellular signals across different organelles.They are characterized by their C-terminal region(TRAF-C domain)containing seven to eight antiparallelβ-sheets,also known as the meprin and TRAF-C homology(MATH)domain.Over the past few decades,significant progress has been made toward understanding the diverse roles of TRAF proteins in mammals and plants.Compared to other eukaryotic species,the Arabidopsis thaliana and rice(Oryza sativa)genomes encode many more TRAF/MATH domaincontaining proteins;these plant proteins cluster into five classes:TRAF/MATH-only,MATH-BPM,MATH-UBP(ubiquitin protease),Seven in absentia(SINA),and MATH-Filament and MATHPEARLI-4 proteins,suggesting parallel evolution of TRAF proteins in plants.Increasing evidence now indicates that plant TRAF proteins form central signaling networks essential for multiple biological processes,such as vegetative and reproductive development,autophagosome formation,plant immunity,symbiosis,phytohormone signaling,and abiotic stress responses.Here,we summarize recent advances and highlight future prospects for understanding on the molecular mechanisms by which TRAF proteins act in plant development and stress responses.

Understanding Plant Development and Stress Responses through Integrative Approaches

As the name reflects, integrative plant biology is the core topic of JIPB. In the past few years JIPB has been pursuing the development of this area, to assist the scientific community to bring together all possible research tools to understand plant growth, development and stress responses in micro- and macro-scales. As part of these efforts, JIPB and Yantai University organized the 1st International Symposium on Integrative Plant Biology in the seaside town of Yantai during August 10-12, 2009 （Figure 1） The symposium was co-sponsored by Botanical Society of China, Chinese Society for Cell Biology, Genetics Society of China, and Chinese Society for Plant Physiology.

Influences of the Populus deltoids seedlings treated with exogenous methyl jasmonate on the growth and development of Lymantria dispar larvae

Lyantria dispar larvae were fed with the leaves of Populus deltoids seedlings exposed to methyl jasmonate （MeJA） for 24 h. The growth and development of the larvae were investigated, and phenolics contents in treated leaves including pyrocatechol, caffeic acid, coumarin, fernlic acid and benzoic acid were also surveyed by high-pressure liquid chromatography （HPLC）. Results indicated that approximate digestibility, efficiency of conversion of ingested food, efficiency of conversion of digested food, and weight of the larvae were inhibited obviously, especially from the sixth day, which may result from the increase of total phenolics contents in treated leaves. This result provides strong supports for MeJA acting as the airborne signal molecule between woody plants.

What are the evolutionary origins of stomatal responses to abscisic acid in land plants?

The evolution of active stomatal closure in response to leaf water deficit, mediated by the hormone abscisic acid （ABA）, has been the subject of recent debate. Two different models for the timing of the evolution of this response recur in the literature. A single-step model for stomatal control suggests that stomata evolved active, ABA- mediated control of stomatal aperture, when these structures first appeared, prior bryophyte and vascular plant gradualistic model for stomatal to the divergence of neages. In contrast, a control proposes that the most basal vascular plant stomata responded passively to changes in leaf water status. This model suggests that active ABA-driven mechanisms for stomatal responses to water status instead evolved after the divergence of seed plants, culminating in the complex, ABA-mediated responses observed in modern angiosperms. Here we review the findings that form the basis for these two models, including recent work that provides critical molecular insights into resolving this intriguing debate, and find strong evidence to support a gradualistic model for stomatal evolution.

Expression Analysis of Aldo-Keto Reductase 1 (AKR1) in Foxtail Millet (Setaria italica L.) Subjected to Abiotic Stresses

Foxtail millet (Setaria italica L.) is a drought-tolerant millet crop of arid and semi-arid regions. Aldo-keto reductases (AKRs) are significant part of plant defence mechanism, having an ability to confer multiple stress tolerance. In this study, AKR1 gene expression was studied in roots and leaves of foxtail millet subjected to different regimes of PEG- and NaCl-stress for seven days. The quantitative Real-time PCR expression analysis in both root and leaves showed upregulation of AKR1 gene during PEG and salt stress. A close correlation exits between expression of AKR1 gene and the rate of lipid peroxidation along with the retardation of growth. Tissue-specific differences were found in the AKR1 gene expression to the stress intensities studied. The reduction in root and shoot growth under both stress conditions were dependent on stress severity. The level of lipid peroxidation as indicated by MDA formation was significantly increased in roots and leaves along with increased stress levels. Finally, these findings support the early responsive nature of AKR1 gene and seem to be associated at least in part with its ability to contribute in antioxidant defence related pathways which could provide a better protection against oxidative stress under stress conditions.