Skeletal muscles are essential for locomotion,posture,and metabolic regulation.To understand physiological processes,exercise adaptation,and muscle-related disorders,it is critical to understand the molecular pathways...Skeletal muscles are essential for locomotion,posture,and metabolic regulation.To understand physiological processes,exercise adaptation,and muscle-related disorders,it is critical to understand the molecular pathways that underlie skeletal muscle function.The process of muscle contra ction,orchestrated by a complex interplay of molecular events,is at the core of skeletal muscle function.Muscle contraction is initiated by an action potential and neuromuscular transmission requiring a neuromuscular junction.Within muscle fibers,calcium ions play a critical role in mediating the interaction between actin and myosin filaments that generate force.Regulation of calcium release from the sarcoplasmic reticulum plays a key role in excitation-contraction coupling.The development and growth of skeletal muscle are regulated by a network of molecular pathways collectively known as myogenesis.Myogenic regulators coordinate the diffe rentiation of myoblasts into mature muscle fibers.Signaling pathways regulate muscle protein synthesis and hypertrophy in response to mechanical stimuli and nutrient availability.Seve ral muscle-related diseases,including congenital myasthenic disorders,sarcopenia,muscular dystrophies,and metabolic myopathies,are underpinned by dys regulated molecular pathways in skeletal muscle.Therapeutic interventions aimed at preserving muscle mass and function,enhancing regeneration,and improving metabolic health hold promise by targeting specific molecular pathways.Other molecular signaling pathways in skeletal muscle include the canonical Wnt signaling pathway,a critical regulator of myogenesis,muscle regeneration,and metabolic function,and the Hippo signaling pathway.In recent years,more details have been uncovered about the role of these two pathways during myogenesis and in developing and adult skeletal muscle fibers,and at the neuromuscular junction.In fact,research in the last few years now suggests that these two signaling pathways are interconnected and that they jointly control physiological and pathophysiological processes in muscle fibers.In this review,we will summarize and discuss the data on these two pathways,focusing on their concerted action next to their contribution to skeletal muscle biology.However,an in-depth discussion of the noncanonical Wnt pathway,the fibro/a dipogenic precursors,or the mechanosensory aspects of these pathways is not the focus of this review.展开更多
目的探讨程序性死亡受体1(PD1)及半胱氨酸天门冬氨酰蛋白酶(cysteine aspartyl protease,Caspasee)募集域家族成员11(caspase recruitment domain family member 11,CARD11)表达与弥漫大B细胞淋巴瘤(DLBCL)患者远期生存的关系。方法选取...目的探讨程序性死亡受体1(PD1)及半胱氨酸天门冬氨酰蛋白酶(cysteine aspartyl protease,Caspasee)募集域家族成员11(caspase recruitment domain family member 11,CARD11)表达与弥漫大B细胞淋巴瘤(DLBCL)患者远期生存的关系。方法选取2012年2月-2014年12月期间唐山市人民医院收治DLBCL患者80例作为本文研究对象,免疫组化法检测淋巴结病理组织PD1和CARD11,分析二者与临床病理参数的关系,采用单因素和多因素Cox回归模型,探讨PD1和CARD11与DLBCL患者远期生存的关系。结果80例DLBCL患者中CARD11阳性为52例,阳性率为65.00%;PD1阳性为44例,阳性率为55.00%;DLBCL患者五年生存率与年龄、Ann Arbor分期、临床疗效、结外累及数目、国际预后指数(IPI)评分、B症状、病理亚型、PD1表达和CARD11表达均有统计学差异(P<0.05);Cox回归分析结果显示Ann-Arbor分期(Ⅲ~Ⅳ)(OR=1.351,95%CI:1.081~1.690)、临床疗效(无效)(OR=1.972,95%CI:1.029~3.780)、年龄(>60岁)(OR=1.473,95%CI:1.182~1.834)、PD1阳性表达(OR=2.399,95%CI:1.892~3.041)和CARD11阳性表达(OR=2.010,95%CI:1.435~2.815)是DLB⁃CL患者5年生存率的独立危险因素(P<0.05)。结论PD1和CARD11均在DLBCL淋巴结病理组织中表达,且是远期生存的独立危险因素,可作为DLBCL患者预后评估有效指标。展开更多
Objective To explore the expression and clinicopathological significance of RASSF1A and WT1 in recurrent epithelial ovarian cancer.Methods Sixty-three cases of patients with pathologically confirmed epithelial ovarian...Objective To explore the expression and clinicopathological significance of RASSF1A and WT1 in recurrent epithelial ovarian cancer.Methods Sixty-three cases of patients with pathologically confirmed epithelial ovarian cancer were collected in the department of Gynaecology and Obsterics of the North China University of Technology from January 2013 to December 2018.The expression of RASSF1A and WT1 were measured by IHC staining.The relation of these proteins with ovarian cancer was also analyzed.Results Compared with non-recurrent group(46.4%),the positive expression rate of RASSF1A was 17.1%in recurrent group.The positive expression rate of WT1 was 74.3%and higher than the rate of 42.8%in non-recurrent group.The reducing expression of RASSF1A was related to clinical stage,differentiation,and with ascites(P<0.05).The increasing expression of WT1 was related to pathological type,clinical stage,histological differentiation,with ascites,and lymph node metastasis(P<0.05).Conclusion Low expression of RASSF1A and high expression of WT1 may be related to recurrent epithelial ovarian cancer.展开更多
Axonal growth inhibitors are released during traumatic injuries to the adult mammalian central nervous system, including after spinal cord injury. These molecules accumulate at the injury site and form a highly inhibi...Axonal growth inhibitors are released during traumatic injuries to the adult mammalian central nervous system, including after spinal cord injury. These molecules accumulate at the injury site and form a highly inhibitory environment for axonal regeneration. Among these inhibitory molecules, myelinassociated inhibitors, including neurite outgrowth inhibitor A, oligodendrocyte myelin glycoprotein, myelin-associated glycoprotein, chondroitin sulfate proteoglycans and repulsive guidance molecule A are of particular importance. Due to their inhibitory nature, they represent exciting molecular targets to study axonal inhibition and regeneration after central injuries. These molecules are mainly produced by neurons, oligodendrocytes, and astrocytes within the scar and in its immediate vicinity. They exert their effects by binding to specific receptors, localized in the membranes of neurons. Receptors for these inhibitory cues include Nogo receptor 1, leucine-rich repeat, and Ig domain containing 1 and p75 neurotrophin receptor/tumor necrosis factor receptor superfamily member 19(that form a receptor complex that binds all myelin-associated inhibitors), and also paired immunoglobulin-like receptor B. Chondroitin sulfate proteoglycans and repulsive guidance molecule A bind to Nogo receptor 1, Nogo receptor 3, receptor protein tyrosine phosphatase σ and leucocyte common antigen related phosphatase, and neogenin, respectively. Once activated, these receptors initiate downstream signaling pathways, the most common amongst them being the Rho A/ROCK signaling pathway. These signaling cascades result in actin depolymerization, neurite outgrowth inhibition, and failure to regenerate after spinal cord injury. Currently, there are no approved pharmacological treatments to overcome spinal cord injuries other than physical rehabilitation and management of the array of symptoms brought on by spinal cord injuries. However, several novel therapies aiming to modulate these inhibitory proteins and/or their receptors are under investigation in ongoing clinical trials. Investigation has also been demonstrating that combinatorial therapies of growth inhibitors with other therapies, such as growth factors or stem-cell therapies, produce stronger results and their potential application in the clinics opens new venues in spinal cord injury treatment.展开更多
目的 探讨AT富交互域3A (ARID3A)对结肠癌细胞化疗敏感性的影响及其作用机制。方法 在人结肠癌细胞系HCT116和SW1116中构建ARID3A过表达或敲低细胞系,设置HCT116-PLVX/SW1116-PLVX过表达对照组、HCT116-ARID3A/SW1116-ARID3A过表达组、H...目的 探讨AT富交互域3A (ARID3A)对结肠癌细胞化疗敏感性的影响及其作用机制。方法 在人结肠癌细胞系HCT116和SW1116中构建ARID3A过表达或敲低细胞系,设置HCT116-PLVX/SW1116-PLVX过表达对照组、HCT116-ARID3A/SW1116-ARID3A过表达组、HCT116-ARID3A-sh1/SW1116-ARID3A-sh1敲减组、HCT116-ARID3A-sh2/SW1116-ARID3A-sh2敲减组和HCT116-SH/SW1116-SH敲减对照组。应用MTT实验检测5-FU作用于各组后的抑制效率。蛋白质谱检测筛选下游调控基因醛酮还原酶家族1成员C3(AKR1C3),采用qRT-PCR和蛋白质印迹法检测ARID3A过表达或敲减对AKR1C3表达的影响。采用双荧光素酶报告基因和染色质免疫沉淀(ChIP)实验分析ARID3A对AKR1C3的调控作用。进一步构建AKR1C3过表达或敲低细胞系,再次应用MTT实验检测其对5-FU的敏感性。结果 与对照组相比,HCT116-ARID3A过表达组(F=151.300,P<0.001;F=11.980,P=0.003;F=5.250,P=0.005)和SW1116-ARID3A过表达组(F=404.902,P<0.001;F=215.901,P<0.001;F=3.185,P=0.023)细胞受5-FU的抑制效率增加,药物和ARID3A表达水平的作用效应存在交互作用。而敲减ARID3A后,相较于对照组细胞表现出了对5-FU敏感性的降低,均P<0.05。进一步筛选出ARID3A的下游靶基因AKR1C3,qRT-PCR实验结果显示,在过表达ARID3A的HCT116和SW1116细胞中,AKR1C3的mRNA水平均低于相应对照组细胞(HCT116:0.395±0.054 vs 1.000±0.162,t=6.147,P=0.004;SW1116:0.250±0.017 vs 1.000±0.332,t=3.911,P=0.017);而在ARID3A敲减细胞中则相反,即AKR1C3的mRNA水平高于相应对照组细胞(HCT116:2.886±0.421 vs 1.000±0.080,t=7.621,P=0.002;SW1116:2.990±0.851 vs 1.000±0.148,t=3.909,P=0.016)。在过表达ARID3A的HCT116和SW1116细胞中,AKR1C3的蛋白水平均低于相应对照组细胞(HCT116:0.780±0.010 vs 1.000±0.012,t=19.630,P=0.004;SW1116:0.130±0.012 vs 0.240±0.029,t=4.880,P=0.032)。而在ARID3A敲减细胞中则相反,即AKR1C3的蛋白水平均高于相应对照组细胞(HCT116:1.630±0.040 vs 1.030±0.026,t=18.140,P=0.005;SW1116:1.070±0.153 vs 0.450±0.033,t=5.590,P=0.031)。并进一步明确ARID3A与AKR1C3结合并发挥其对AKR1C3的转录抑制作用。在HCT116和SW1116细胞中,过表达AKR1C3后,相较于对照组细胞均表现出了对5-FU敏感性的减弱,药物和AKR1C3表达水平的作用效应存在交互作用,均P<0.05。而敲减AKR1C3后,相较于对照组细胞表现出了对5-FU敏感性的增强,均P<0.05。结论 ARID3A通过抑制结肠癌细胞中的耐药相关基因AKR1C3促进结肠癌细胞对化疗药物5-FU的敏感性。展开更多
Objective: To provide comprehensive data to understand mechanisms of vascular endothelial cell(VEC) response to hypoxia/re-oxygenation. Methods: Human umbilical vein endothelial cells(HUVECs) were employed to construc...Objective: To provide comprehensive data to understand mechanisms of vascular endothelial cell(VEC) response to hypoxia/re-oxygenation. Methods: Human umbilical vein endothelial cells(HUVECs) were employed to construct hypoxia/re-oxygenation-induced VEC transcriptome profiling. Cells incubated under 5% O2, 5% CO2, and 90% N2 for 3 h followed by 95% air and 5% CO2 for 1 h were used in the hypoxia/re-oxygenation group. Those incubated only under 95% air and 5% CO2 were used in the normoxia control group. Results: By using a well-established microarray chip consisting of 58 339 probes, the study identified 372 differentially expressed genes. While part of the genes are known to be VEC hypoxia/re-oxygenation-related, serving as a good control, a large number of genes related to VEC hypoxia/re-oxygenation were identified for the first time. Through bioinformatic analysis of these genes, we identified that multiple pathways were involved in the reaction. Subsequently, we applied real-time polymerase chain reaction(PCR) and western blot techniques to validate the microarray data. It was found that the expression of apoptosis-related proteins, like pleckstrin homology-like domain family A member 1(PHLDA1), was also consistently up-regulated in the hypoxia/re-oxygenation group. STRING analysis found that significantly differentially expressed genes SLC38A3, SLC5A5, Lnc-SLC36 A4-1, and Lnc-PLEKHJ1-1 may have physical or/and functional protein–protein interactions with PHLDA1. Conclusions: The data from this study have built a foundation to develop many hypotheses to further explore the hypoxia/re-oxygenation mechanisms, an area with great clinical significance for multiple diseases.展开更多
基金supported by the German Research Council(Deutsche Forschungsgemeinschaft,HA3309/3-1/2,HA3309/6-1,HA3309/7-1)。
文摘Skeletal muscles are essential for locomotion,posture,and metabolic regulation.To understand physiological processes,exercise adaptation,and muscle-related disorders,it is critical to understand the molecular pathways that underlie skeletal muscle function.The process of muscle contra ction,orchestrated by a complex interplay of molecular events,is at the core of skeletal muscle function.Muscle contraction is initiated by an action potential and neuromuscular transmission requiring a neuromuscular junction.Within muscle fibers,calcium ions play a critical role in mediating the interaction between actin and myosin filaments that generate force.Regulation of calcium release from the sarcoplasmic reticulum plays a key role in excitation-contraction coupling.The development and growth of skeletal muscle are regulated by a network of molecular pathways collectively known as myogenesis.Myogenic regulators coordinate the diffe rentiation of myoblasts into mature muscle fibers.Signaling pathways regulate muscle protein synthesis and hypertrophy in response to mechanical stimuli and nutrient availability.Seve ral muscle-related diseases,including congenital myasthenic disorders,sarcopenia,muscular dystrophies,and metabolic myopathies,are underpinned by dys regulated molecular pathways in skeletal muscle.Therapeutic interventions aimed at preserving muscle mass and function,enhancing regeneration,and improving metabolic health hold promise by targeting specific molecular pathways.Other molecular signaling pathways in skeletal muscle include the canonical Wnt signaling pathway,a critical regulator of myogenesis,muscle regeneration,and metabolic function,and the Hippo signaling pathway.In recent years,more details have been uncovered about the role of these two pathways during myogenesis and in developing and adult skeletal muscle fibers,and at the neuromuscular junction.In fact,research in the last few years now suggests that these two signaling pathways are interconnected and that they jointly control physiological and pathophysiological processes in muscle fibers.In this review,we will summarize and discuss the data on these two pathways,focusing on their concerted action next to their contribution to skeletal muscle biology.However,an in-depth discussion of the noncanonical Wnt pathway,the fibro/a dipogenic precursors,or the mechanosensory aspects of these pathways is not the focus of this review.
文摘目的探讨程序性死亡受体1(PD1)及半胱氨酸天门冬氨酰蛋白酶(cysteine aspartyl protease,Caspasee)募集域家族成员11(caspase recruitment domain family member 11,CARD11)表达与弥漫大B细胞淋巴瘤(DLBCL)患者远期生存的关系。方法选取2012年2月-2014年12月期间唐山市人民医院收治DLBCL患者80例作为本文研究对象,免疫组化法检测淋巴结病理组织PD1和CARD11,分析二者与临床病理参数的关系,采用单因素和多因素Cox回归模型,探讨PD1和CARD11与DLBCL患者远期生存的关系。结果80例DLBCL患者中CARD11阳性为52例,阳性率为65.00%;PD1阳性为44例,阳性率为55.00%;DLBCL患者五年生存率与年龄、Ann Arbor分期、临床疗效、结外累及数目、国际预后指数(IPI)评分、B症状、病理亚型、PD1表达和CARD11表达均有统计学差异(P<0.05);Cox回归分析结果显示Ann-Arbor分期(Ⅲ~Ⅳ)(OR=1.351,95%CI:1.081~1.690)、临床疗效(无效)(OR=1.972,95%CI:1.029~3.780)、年龄(>60岁)(OR=1.473,95%CI:1.182~1.834)、PD1阳性表达(OR=2.399,95%CI:1.892~3.041)和CARD11阳性表达(OR=2.010,95%CI:1.435~2.815)是DLB⁃CL患者5年生存率的独立危险因素(P<0.05)。结论PD1和CARD11均在DLBCL淋巴结病理组织中表达,且是远期生存的独立危险因素,可作为DLBCL患者预后评估有效指标。
文摘Objective To explore the expression and clinicopathological significance of RASSF1A and WT1 in recurrent epithelial ovarian cancer.Methods Sixty-three cases of patients with pathologically confirmed epithelial ovarian cancer were collected in the department of Gynaecology and Obsterics of the North China University of Technology from January 2013 to December 2018.The expression of RASSF1A and WT1 were measured by IHC staining.The relation of these proteins with ovarian cancer was also analyzed.Results Compared with non-recurrent group(46.4%),the positive expression rate of RASSF1A was 17.1%in recurrent group.The positive expression rate of WT1 was 74.3%and higher than the rate of 42.8%in non-recurrent group.The reducing expression of RASSF1A was related to clinical stage,differentiation,and with ascites(P<0.05).The increasing expression of WT1 was related to pathological type,clinical stage,histological differentiation,with ascites,and lymph node metastasis(P<0.05).Conclusion Low expression of RASSF1A and high expression of WT1 may be related to recurrent epithelial ovarian cancer.
基金a Ph D fellowship by FCT-Fundacao para a Ciência Tecnologia (SFRH/BD/135868/2018)(to SSC)。
文摘Axonal growth inhibitors are released during traumatic injuries to the adult mammalian central nervous system, including after spinal cord injury. These molecules accumulate at the injury site and form a highly inhibitory environment for axonal regeneration. Among these inhibitory molecules, myelinassociated inhibitors, including neurite outgrowth inhibitor A, oligodendrocyte myelin glycoprotein, myelin-associated glycoprotein, chondroitin sulfate proteoglycans and repulsive guidance molecule A are of particular importance. Due to their inhibitory nature, they represent exciting molecular targets to study axonal inhibition and regeneration after central injuries. These molecules are mainly produced by neurons, oligodendrocytes, and astrocytes within the scar and in its immediate vicinity. They exert their effects by binding to specific receptors, localized in the membranes of neurons. Receptors for these inhibitory cues include Nogo receptor 1, leucine-rich repeat, and Ig domain containing 1 and p75 neurotrophin receptor/tumor necrosis factor receptor superfamily member 19(that form a receptor complex that binds all myelin-associated inhibitors), and also paired immunoglobulin-like receptor B. Chondroitin sulfate proteoglycans and repulsive guidance molecule A bind to Nogo receptor 1, Nogo receptor 3, receptor protein tyrosine phosphatase σ and leucocyte common antigen related phosphatase, and neogenin, respectively. Once activated, these receptors initiate downstream signaling pathways, the most common amongst them being the Rho A/ROCK signaling pathway. These signaling cascades result in actin depolymerization, neurite outgrowth inhibition, and failure to regenerate after spinal cord injury. Currently, there are no approved pharmacological treatments to overcome spinal cord injuries other than physical rehabilitation and management of the array of symptoms brought on by spinal cord injuries. However, several novel therapies aiming to modulate these inhibitory proteins and/or their receptors are under investigation in ongoing clinical trials. Investigation has also been demonstrating that combinatorial therapies of growth inhibitors with other therapies, such as growth factors or stem-cell therapies, produce stronger results and their potential application in the clinics opens new venues in spinal cord injury treatment.
文摘目的 探讨AT富交互域3A (ARID3A)对结肠癌细胞化疗敏感性的影响及其作用机制。方法 在人结肠癌细胞系HCT116和SW1116中构建ARID3A过表达或敲低细胞系,设置HCT116-PLVX/SW1116-PLVX过表达对照组、HCT116-ARID3A/SW1116-ARID3A过表达组、HCT116-ARID3A-sh1/SW1116-ARID3A-sh1敲减组、HCT116-ARID3A-sh2/SW1116-ARID3A-sh2敲减组和HCT116-SH/SW1116-SH敲减对照组。应用MTT实验检测5-FU作用于各组后的抑制效率。蛋白质谱检测筛选下游调控基因醛酮还原酶家族1成员C3(AKR1C3),采用qRT-PCR和蛋白质印迹法检测ARID3A过表达或敲减对AKR1C3表达的影响。采用双荧光素酶报告基因和染色质免疫沉淀(ChIP)实验分析ARID3A对AKR1C3的调控作用。进一步构建AKR1C3过表达或敲低细胞系,再次应用MTT实验检测其对5-FU的敏感性。结果 与对照组相比,HCT116-ARID3A过表达组(F=151.300,P<0.001;F=11.980,P=0.003;F=5.250,P=0.005)和SW1116-ARID3A过表达组(F=404.902,P<0.001;F=215.901,P<0.001;F=3.185,P=0.023)细胞受5-FU的抑制效率增加,药物和ARID3A表达水平的作用效应存在交互作用。而敲减ARID3A后,相较于对照组细胞表现出了对5-FU敏感性的降低,均P<0.05。进一步筛选出ARID3A的下游靶基因AKR1C3,qRT-PCR实验结果显示,在过表达ARID3A的HCT116和SW1116细胞中,AKR1C3的mRNA水平均低于相应对照组细胞(HCT116:0.395±0.054 vs 1.000±0.162,t=6.147,P=0.004;SW1116:0.250±0.017 vs 1.000±0.332,t=3.911,P=0.017);而在ARID3A敲减细胞中则相反,即AKR1C3的mRNA水平高于相应对照组细胞(HCT116:2.886±0.421 vs 1.000±0.080,t=7.621,P=0.002;SW1116:2.990±0.851 vs 1.000±0.148,t=3.909,P=0.016)。在过表达ARID3A的HCT116和SW1116细胞中,AKR1C3的蛋白水平均低于相应对照组细胞(HCT116:0.780±0.010 vs 1.000±0.012,t=19.630,P=0.004;SW1116:0.130±0.012 vs 0.240±0.029,t=4.880,P=0.032)。而在ARID3A敲减细胞中则相反,即AKR1C3的蛋白水平均高于相应对照组细胞(HCT116:1.630±0.040 vs 1.030±0.026,t=18.140,P=0.005;SW1116:1.070±0.153 vs 0.450±0.033,t=5.590,P=0.031)。并进一步明确ARID3A与AKR1C3结合并发挥其对AKR1C3的转录抑制作用。在HCT116和SW1116细胞中,过表达AKR1C3后,相较于对照组细胞均表现出了对5-FU敏感性的减弱,药物和AKR1C3表达水平的作用效应存在交互作用,均P<0.05。而敲减AKR1C3后,相较于对照组细胞表现出了对5-FU敏感性的增强,均P<0.05。结论 ARID3A通过抑制结肠癌细胞中的耐药相关基因AKR1C3促进结肠癌细胞对化疗药物5-FU的敏感性。
基金Project supported by the National Natural Science Foundation of China(Nos.81801572 and 81272075)the Foundation of Key Discipline Construction of Zhejiang Province for Traditional Chinese Medicine(No.2017-XKA36)+5 种基金the Foundation of Key Research Project of Zhejiang Province for Traditional Chinese Medicine(No.2019ZZ014)the Medical and Health Science Foundation of Zhejiang Province(No.2019327552)the Key Research and Development Program of Zhejiang Province(No.2019C03076)the General Research Program of Zhejiang Provincial Department of Medical and Health(No.2013KYA066)the Opening Foundation of State Key Laboratory for the Diagnosis and Treatment of Infectious Diseases(Nos.2018KF02 and 2019KF06)the Program of Education Department of Zhejiang Province(No.Y201738150),China。
文摘Objective: To provide comprehensive data to understand mechanisms of vascular endothelial cell(VEC) response to hypoxia/re-oxygenation. Methods: Human umbilical vein endothelial cells(HUVECs) were employed to construct hypoxia/re-oxygenation-induced VEC transcriptome profiling. Cells incubated under 5% O2, 5% CO2, and 90% N2 for 3 h followed by 95% air and 5% CO2 for 1 h were used in the hypoxia/re-oxygenation group. Those incubated only under 95% air and 5% CO2 were used in the normoxia control group. Results: By using a well-established microarray chip consisting of 58 339 probes, the study identified 372 differentially expressed genes. While part of the genes are known to be VEC hypoxia/re-oxygenation-related, serving as a good control, a large number of genes related to VEC hypoxia/re-oxygenation were identified for the first time. Through bioinformatic analysis of these genes, we identified that multiple pathways were involved in the reaction. Subsequently, we applied real-time polymerase chain reaction(PCR) and western blot techniques to validate the microarray data. It was found that the expression of apoptosis-related proteins, like pleckstrin homology-like domain family A member 1(PHLDA1), was also consistently up-regulated in the hypoxia/re-oxygenation group. STRING analysis found that significantly differentially expressed genes SLC38A3, SLC5A5, Lnc-SLC36 A4-1, and Lnc-PLEKHJ1-1 may have physical or/and functional protein–protein interactions with PHLDA1. Conclusions: The data from this study have built a foundation to develop many hypotheses to further explore the hypoxia/re-oxygenation mechanisms, an area with great clinical significance for multiple diseases.