Five Populus×euramericana wood samples representing three different sites were selected and near infrared(NIR)spectra were obtained.For these sections,basis weight,brightness and three mechanical properties(tensi...Five Populus×euramericana wood samples representing three different sites were selected and near infrared(NIR)spectra were obtained.For these sections,basis weight,brightness and three mechanical properties(tensile index,tearing index and bursting index)were determined by standard analytical methods.Calibrations were developed for each paper property using the NIR spectra,data on paper properties,using partial least squares(PLS)regression.The results show that the coefficients of correlation of calibration and validation for basis weight were0.8824 and 0.8299,respectively;the standard error of calibration(SEC)and prediction(SEP)were 1.150 and 1.170,respectively.In testing for brightness,the correlation coefficient of calibration was 0.9621 and for validation 0.9612,while the SEC and SEP were 0.997 and 1.300,respectively;paper brightness and NIR spectroscopy were highly correlated.NIR spectroscopy can be used to predict tensile,tearing and bursting indices of paper samples rapidly.We found that the paper properties fitted by NIR and GB methods were highly correlated.The coefficients of correlation of calibration and validation for basis weight exceeded 0.8000,while the SEC and SEP were very small.These results reveal that the five paper properties of Populus×euramericana and those predicted by the NIR model were highly correlated.We conclude that the NIR models can be used for the prediction of paper properties.展开更多
Biogeographical barriers to gene flow are central to plant phylogeography.In East Asia,plant distribution is greatly influenced by two phylogeographic breaks,the Mekong-Salween Divide and Tanaka-Kaiyong Line,however,f...Biogeographical barriers to gene flow are central to plant phylogeography.In East Asia,plant distribution is greatly influenced by two phylogeographic breaks,the Mekong-Salween Divide and Tanaka-Kaiyong Line,however,few studies have investigated how these barriers affect the genetic diversity of species that are distributed across both.Here we used 14 microsatellite loci and four chloroplast DNA fragments to examine genetic diversity and distribution patterns of 49 populations of Populus rotundifolia,a species that spans both the Mekong-Salween Divide and the Tanaka-Kaiyong Line in southwestern China.Demographic and migration hypotheses were tested using coalescent-based approaches.Limited historical gene flow was observed between the western and eastern groups of P.rotundifolia,but substantial flow occurred across both the Mekong-Salween Divide and Tanaka-Kaiyong Line,manifesting in clear admixture and high genetic diversity in the central group.Wind-borne pollen and seeds may have facilitated the dispersal of P.rotundifolia following prevalent northwest winds in the spring.We also found that the Hengduan Mountains,where multiple genetic barriers were detected,acted on the whole as a barrier between the western and eastern groups of P.rotundifolia.Ecological niche modeling suggested that P.rotundifolia has undergone range expansion since the last glacial maximum,and demographic reconstruction indicated an earlier population expansion around 600 Ka.The phylogeographic pattern of P.rotundifolia reflects the interplay of biological traits,wind patterns,barriers,niche differentiation,and Quaternary climate history.This study emphasizes the need for multiple lines of evidence in understanding the Quaternary evolution of plants in topographically complex areas.展开更多
Poplar is useful in different climates for bioenergy production and carbon sequestration when planted as a single species or in agroforestry. Europe has large areas potentially suitable for poplar forestry and a bioen...Poplar is useful in different climates for bioenergy production and carbon sequestration when planted as a single species or in agroforestry. Europe has large areas potentially suitable for poplar forestry and a bioenergy policy that would encourage poplar forestry. In this study I estimated biomass production and carbon sequestration in poplar monoculture plantation and poplar-wheat agroforestry, in the Mediterranean region of France. A single-tree harvesting method was used to estimate biomass and an empirical conversion factor was adopted to calculate sequestered carbon. Total biomass was higher in agroforestry trees(1223 kg tree^(-1)) than in monoculture plantation trees(1102 kg tree^(-1)).Aboveground and belowground biomass distributions were similar in both cases(89 and 88% aboveground, and 11 and12% belowground, respectively in agroforestry and monoculture). The partitioning of total biomass in an agroforestry tree in leaves, branch, and trunk(aboveground), and fine roots, medium roots, coarse roots and underground stem(belowground) was 1,22,and 77,and 6,9, 44 and 40%,respectively. Except for branch and trunk, all other compartments were similarly distributed in a monoculture tree.Storage of C was higher in agroforestry trees(612 kg tree^(-1))than in monoculture trees(512 kg tree^(-1)). In contrast, C storage on a per hectare basis was lower in agroforestry(85 Mg ha^(-1)) than in monoculture(105 Mg ha^(-1)) due to the lower density of trees per hectare in agroforestry(139 trees in agroforestry vs 204 trees in monoculture). On a per hectare basis, soil C stocks pattern were similar to per tree stocking:They were higher in agroforestry at 330 Mg ha^(-1) than in monoculture 304 Mg ha^(-1). Higher C accumulation by agroforestry has a direct management implication in the sense that expanding agroforestry into agriculture production areas with short rotation and fast growing trees like poplar would encourage quicker and greater C sequestration. This could simultaneously fulfil the requirement of bioenergy plantation in Europe.展开更多
Genomics research of Populus deltoides,an important timber species that is widely planted worldwide,is an important part of poplar breeding.Currently,the nuclear and chloroplast genome of P.deltoides have been sequenc...Genomics research of Populus deltoides,an important timber species that is widely planted worldwide,is an important part of poplar breeding.Currently,the nuclear and chloroplast genome of P.deltoides have been sequenced,but its mitochondrial genome(mitogenome)has not been reported.To further explore the evolution and phylogeny of P.deltoides,the mitogenome of P.deltoides I-69 was assembled using reads from Nanopore and Illumina sequencing platforms and found to consist of 802,637 bp and three circular chromosomes(336,205,280,841,and 185,591 bp)containing 58 genes(34 protein-coding genes,21 tRNA genes,and 3 rRNA genes).RNA analysis in combination with several species showed signifi cantly fewer RNA editingsites in the mitogenomes of poplar and other angiosperms than in gymnosperms.Sequence transfer analysis showed extensive mitogenome rearrangements in Populus species,and with evolution from lower to higher plants,tRNA transfer from chloroplasts to mitochondria became increasingly frequent.In a phylogenetic analysis,the evolutionary status of P.deltoides was determined,and the section Populus was supported.Our results based on the fi rst report of a multicircular conformation of the Populus mitogenome provide a basis for further study of the evolution and genetics of P.deltoides and other Populus species and for breeding programs.展开更多
The strength of phylogeographic breaks can vary among species in the same area despite being subject to the same geological and climate history due to differences in biological traits.Several important phylogeographic...The strength of phylogeographic breaks can vary among species in the same area despite being subject to the same geological and climate history due to differences in biological traits.Several important phylogeographic breaks exist around the Sichuan Basin in Southwest China but few studies have focused on wind-dispersed plants.Here,we investigated the phylogeographic patterns and the evolutionary history of Populus lasiocarpa,a wind-pollinated and wind-dispersed tree species with a circum-Sichuan Basin distribution in southwest China.We sequenced and analyzed three plastid DNA fragments(ptDNA) and eight nuclear microsatellites(nSSRs) of 265 individuals of P.lasiocarpa from 21 populations spanning the entire distribution range.Distribution patterns based on nSSR data revealed that there are three genetic groups in P.lasiocarpa.This is consistent with the three phylogeographic breaks(Sichuan Basin,the Kaiyong Line and the 105°E line),where the Sichuan basin acts as the main barrier to gene flow between western and eastern groups.However,the distribution pattern based on ptDNA haplotypes poorly matched the phylogeographic breaks,and wind-dispersed seeds may be one of the main contributing factors.Species distribution modelling suggested a larger potential distribution in the last glacial maximum with a severe bottleneck during the last interglacial.A DIYABC model also suggested a population contraction and expansion for both western and eastern lineages.These results indicate that biological traits are likely to affect the evolutionary history of plants,and that nuclear molecular markers,which experience higher levels of gene flow,might be better indicators of phylogeographic breaks.展开更多
Acyl-CoA-binding proteins(ACBPs)are important for the transport of acyl groups for macro molecular biosynthesis involved in plant growth,development,and diverse stress(e.g.,cold,drought,salinity,and heavy metals)respo...Acyl-CoA-binding proteins(ACBPs)are important for the transport of acyl groups for macro molecular biosynthesis involved in plant growth,development,and diverse stress(e.g.,cold,drought,salinity,and heavy metals)responses.Here,we report the phylogeny and characteristics of the ACBP family in the woody plant Populus trichocarpa.Eight genes encoding ACBP proteins were identified,and they are distributed on eight chromosomes in P.trichocarpa.These PtACBP genes were divided into four subgroups according to gene structure,conserved motifs and phylogenetic relationship.Promoter analysis revealed that cis-elements were related to stress response,phytohormone response,and physical and reproductive growth regulation.Expression levels of PtACBP genes varied among different organs,with the highest expression in leaves and the lowest in stems.Quantitative real-time PCR(qRT-PCR)analysis showed that under salinity-alkali stresses(i.e.,200 mM NaCl,75 mM Na2CO3,and 100 mM NaHCO3),four(PtACBP1,PtACBP3,PtACBP4 and PtACBP8)of eight PtACBP genes were significantly induced in roots and leaves.These data provide a comprehensive analysis of the ACBPs family in P.trichocarpa,which could be useful for gene function analyses.展开更多
Background: Trunk volume(Vt) is an essential parameter for estimating forest stand volume, biomass, and carbon sequestration potential. As the dominant tree species in desert riparian forests, Euphrates poplar(Populus...Background: Trunk volume(Vt) is an essential parameter for estimating forest stand volume, biomass, and carbon sequestration potential. As the dominant tree species in desert riparian forests, Euphrates poplar(Populus euphratica) has a high proportion of irregularly shaped tree trunks along the Tarim River, NW China, where the habitat is very fragile owing to long-term water stress. This causes uncertainty in estimation accuracy as well as technical challenges for forest surveys. Our study aimed to acquire P. euphratica Vtusing terrestrial laser scanning(TLS) and to establish a species-specific Vtprediction model.Methods: A total of 240 individual trees were measured by TLS multiple-station in 12 sampling plots in three sections along the lower reaches of the Tarim River. Vtwas calculated by a definite integration method using trunk diameters(Di) at every 0.1-m tree height obtained from TLS, and all data were split randomly into two sets:70% of data were used to estimate the model parameter calibration, and the remaining 30% were used for model validation. Sixteen widely used candidate tree Vtestimation models were fitted to the TLS-measured Vtand tree structural parameter data, including tree height(H), diameter at breast height(DBH), and basal diameter(BD). All model performances were evaluated and compared by the statistical parameters of determination coefficient(R^(2)),root mean square error(RMSE), Bayesian information criterion(BIC), mean prediction error(ME), mean absolute error(MAE), and modeling efficiency(EF), and accordingly the best model was selected.Results: TLS point cloud reflection intensity(RI) has advantageous in the extraction of data from irregular tree trunk structures. The P. euphratica tree Vtvalues showed obvious differences at the same tree height(H). There was no significant correlation between Vtand H(R^(2)=0.11, P < 0.01), which reflected the irregularity of P. euphratica trunk shape in the study area. Among all the models, model(14): Vt=0.909DBH1.184H0.487BD0.836(R^(2)=0.97, RMSE=0.14) had the best prediction capability for irregularly shaped Vtwith the highest R^(2), BIC(-37.96), and EF(0.96), and produced a smaller ME(0.006) and MAE(1.177) compared to other models. The prediction accuracy was 93.18%.Conclusions: TLS point cloud RI has a potential for nondestructively measuring irregularly shaped trunk structures of P. euphratica and developed Vtprediction models. The multivariate models more effectively predicted Vtfor irregularly shaped trees compared to one-way and general volume models.展开更多
KANADI(KAN)is a plant-specific gene that controlled the polarity development of lateral organs.It mainly acted on the abaxial characteristics of plants to make the lateral organs asymmetrical.However,it had been less ...KANADI(KAN)is a plant-specific gene that controlled the polarity development of lateral organs.It mainly acted on the abaxial characteristics of plants to make the lateral organs asymmetrical.However,it had been less identified in woody plants.In this study,the members of the KAN gene family in Populus trichocarpa were identified and analyzed using the bioinformatics method.The results showed that a total of 8 KAN family members were screened out,and each member contained the unique GARP domain and conserved region of the family proteins.Phylogenetic analysis and their gene structures revealed that all KAN genes from P.trichocarpa,Arabidopsis thaliana,and Nicotiana benthamiana could be divided into four subgroups,while the eight genes in P.trichocarpa were classified into three subgroups,respectively.The analysis of tissue-specific expression indicated that PtKAN1 was highly expressed in young leaves,PtKAN6 was highly expressed in young leaves and mature leaves,PtKAN2,PtKAN5,and PtKAN7 were highly expressed in nodes and internodes,PtKAN8 was highly expressed in roots,and PtKAN3 and PtKAN4 showed low expression levels in all tissues.Among them,PtKAN2 and PtKAN6,and PtKAN4 and PtKAN5 might have functional redundancy.Under high nitrogen concentrations,PtKAN2 and PtKAN8 were highly expressed in mature stems and leaves,respectively,while PtKAN4,PtKAN5,and PtKAN7 were highly expressed in roots.This study laid a theoretical foundation for further study of the KAN genemediated nitrogen effect on root development.展开更多
Traditionally,plant distribution is thought to be closely related to environmental factors.But recently,it is found that Populus,quite different from other plant taxa,adapted to negative environmental changes,and succ...Traditionally,plant distribution is thought to be closely related to environmental factors.But recently,it is found that Populus,quite different from other plant taxa,adapted to negative environmental changes,and successfully migrated to different climate zones from its origin places of warm temperate zone.Conversely,Metasequoia is gradually tending to extinction from the Miocene to Quaternary.Based on above contrary cases,two response patterns of plant to negative environmental changes are proposed.One is active adaptation represented by Populus,the other is passive adaptation represented by Metasequoia.The plants of passive strategy characterized for desert prevention might be easily replaced by those of active strategy characterized for desert utilization.Fast growing plants,such as Populus with characteristics of drought and salt tolerance,wind and sand resistance,are selected in Tarim Basin in southern Xinjiang,China,as a good example of desert utilization in the construction of new highways and towns,not only serve as farmland shelterbelt in sandy area.In addition,Populus with high-altitude and cold adaptation has also been selected as an ideal tree planted in Tibet.Therefore,the idea of using Populus as one of the preferred pioneer trees to colonize Mars is proposed.展开更多
[Objectives]The paper was to study the fine root distribution characteristics of Populus cathayana plantations at different ages in alpine sandy land.[Methods]With 5,10,15,20,and 25 years old P.cathayana plantation in...[Objectives]The paper was to study the fine root distribution characteristics of Populus cathayana plantations at different ages in alpine sandy land.[Methods]With 5,10,15,20,and 25 years old P.cathayana plantation in the eastern margin of Gonghe Basin,Qinghai Province as the research objects,fine roots were collected by root core drilling method,and the differences of fine root biomass,root length density,average diameter and root tip number at the soil depths of 0-20,20-40,40-60,60-80 and 80-100 cm were analyzed.[Results]The total biomass density of P.cathayana plantation was mainly distributed in the soil layer of 0-60 cm,accounting for 76%of the entire soil layer,and its value increased with the increase in forest age.With the increase in different forest ages,the root length density,average diameter and root tip number of living fine roots in the soil layer of 0-60 cm accounted for 74%-81%of the entire soil layer,and the proportions in the soil layers of 60-80 and 80-100 cm were 9%-11%.The biomass density,root length density,average diameter and root tip number of living and dead fine roots of P.cathayana plantation increased with the increase of forest age.The root length density,average diameter and root tip number of P.cathayana fine roots showed a linear function change trend with the growth of forest age,which could be described by the linear function equation y=ax+b(a>0).The analysis results showed that the root length density,average diameter and root tip number of P.cathayana were significantly correlated with the total biomass density of fine roots,and the root length density and average diameter had an extremely positive correlation with the total biomass density.[Conclusions]In the future,P.cathayana plantation should be properly tended to promote the development of fine roots and maximize its ecological benefits.展开更多
Plant species produce different types of allelopathic chemicals in nature;however,little is known about the differential regulation of plant allelopathy.Because allelopathy caused by p-hydroxybenzoic acid(pHBA)is one ...Plant species produce different types of allelopathic chemicals in nature;however,little is known about the differential regulation of plant allelopathy.Because allelopathy caused by p-hydroxybenzoic acid(pHBA)is one of the main obstacles to continuous cropping of Populus×euramericana ‘Neva’,we examined gene expression dynamics in Neva leaves induced by pHBA.The expression of genes related to photosynthesis and respiration changed,while mRNA involved in regulating gene expression during allelopathy was degraded.Some miRNAs that are involved in plant allelopathy target crucial genes for regulating reactive oxygen species.Moreover,coexpression regulatory networks were constructed based on profiles of the identified miRNA-target interactions and the differentially expressed miRNA-target pairs.These findings provide a mechanistic framework for understanding allelopathy in plants.展开更多
In order to select a suitable genotype for the studies on genetic transformation, the difference among three genotypes (DN04-18, DN04-25 and DN04-26) of Populus × euramericana (Populus deltoides × P. nigra) ...In order to select a suitable genotype for the studies on genetic transformation, the difference among three genotypes (DN04-18, DN04-25 and DN04-26) of Populus × euramericana (Populus deltoides × P. nigra) in terms of shoot regeneration was investigated in this paper. An efficient in vitro micropropagation method was successfully established for genotype DN04-18. The high frequency shoot regeneration (90.0%) from leaf discs was obtained in genotype DN04-18 on the modified Murashige and Skoog (mMS) medium with 30 g/L sucrose and 5.5 g/L agar (pH: 5.8) which was supplemented with 0.8 mg/L 6-benzyladenine (6-BA), while the shoot regeneration rates of DN04-25 and DN04-26 were below 40.0% even on the same medium. The optimum rooting medium was 1/2 mMS medium supplemented with 0.3-0.4 mg/L indole-3-butyric acid (IBA) for three genotypes. The results showed that genotype is a key factor for restricting shoot regeneration in establishing regeneration system of P. × euramerican hybrids. This micropropagation system of DN04-18 is expected to be suitable for the studies on gene transformation to improve drought tolerance of P. × euramerican.展开更多
文摘Five Populus×euramericana wood samples representing three different sites were selected and near infrared(NIR)spectra were obtained.For these sections,basis weight,brightness and three mechanical properties(tensile index,tearing index and bursting index)were determined by standard analytical methods.Calibrations were developed for each paper property using the NIR spectra,data on paper properties,using partial least squares(PLS)regression.The results show that the coefficients of correlation of calibration and validation for basis weight were0.8824 and 0.8299,respectively;the standard error of calibration(SEC)and prediction(SEP)were 1.150 and 1.170,respectively.In testing for brightness,the correlation coefficient of calibration was 0.9621 and for validation 0.9612,while the SEC and SEP were 0.997 and 1.300,respectively;paper brightness and NIR spectroscopy were highly correlated.NIR spectroscopy can be used to predict tensile,tearing and bursting indices of paper samples rapidly.We found that the paper properties fitted by NIR and GB methods were highly correlated.The coefficients of correlation of calibration and validation for basis weight exceeded 0.8000,while the SEC and SEP were very small.These results reveal that the five paper properties of Populus×euramericana and those predicted by the NIR model were highly correlated.We conclude that the NIR models can be used for the prediction of paper properties.
基金funded by the National Natural Science Foundation of China(grants 41571054 and 31622015)the National Basic Research Program of China(grant 2014CB954100)+1 种基金Sichuan University(Fundamental Research Funds for the Central Universities,SCU2021D006 and SCU2022D003Institutional Research Funds,2021SCUNL102).
文摘Biogeographical barriers to gene flow are central to plant phylogeography.In East Asia,plant distribution is greatly influenced by two phylogeographic breaks,the Mekong-Salween Divide and Tanaka-Kaiyong Line,however,few studies have investigated how these barriers affect the genetic diversity of species that are distributed across both.Here we used 14 microsatellite loci and four chloroplast DNA fragments to examine genetic diversity and distribution patterns of 49 populations of Populus rotundifolia,a species that spans both the Mekong-Salween Divide and the Tanaka-Kaiyong Line in southwestern China.Demographic and migration hypotheses were tested using coalescent-based approaches.Limited historical gene flow was observed between the western and eastern groups of P.rotundifolia,but substantial flow occurred across both the Mekong-Salween Divide and Tanaka-Kaiyong Line,manifesting in clear admixture and high genetic diversity in the central group.Wind-borne pollen and seeds may have facilitated the dispersal of P.rotundifolia following prevalent northwest winds in the spring.We also found that the Hengduan Mountains,where multiple genetic barriers were detected,acted on the whole as a barrier between the western and eastern groups of P.rotundifolia.Ecological niche modeling suggested that P.rotundifolia has undergone range expansion since the last glacial maximum,and demographic reconstruction indicated an earlier population expansion around 600 Ka.The phylogeographic pattern of P.rotundifolia reflects the interplay of biological traits,wind patterns,barriers,niche differentiation,and Quaternary climate history.This study emphasizes the need for multiple lines of evidence in understanding the Quaternary evolution of plants in topographically complex areas.
基金financially supported by European Union and INRA
文摘Poplar is useful in different climates for bioenergy production and carbon sequestration when planted as a single species or in agroforestry. Europe has large areas potentially suitable for poplar forestry and a bioenergy policy that would encourage poplar forestry. In this study I estimated biomass production and carbon sequestration in poplar monoculture plantation and poplar-wheat agroforestry, in the Mediterranean region of France. A single-tree harvesting method was used to estimate biomass and an empirical conversion factor was adopted to calculate sequestered carbon. Total biomass was higher in agroforestry trees(1223 kg tree^(-1)) than in monoculture plantation trees(1102 kg tree^(-1)).Aboveground and belowground biomass distributions were similar in both cases(89 and 88% aboveground, and 11 and12% belowground, respectively in agroforestry and monoculture). The partitioning of total biomass in an agroforestry tree in leaves, branch, and trunk(aboveground), and fine roots, medium roots, coarse roots and underground stem(belowground) was 1,22,and 77,and 6,9, 44 and 40%,respectively. Except for branch and trunk, all other compartments were similarly distributed in a monoculture tree.Storage of C was higher in agroforestry trees(612 kg tree^(-1))than in monoculture trees(512 kg tree^(-1)). In contrast, C storage on a per hectare basis was lower in agroforestry(85 Mg ha^(-1)) than in monoculture(105 Mg ha^(-1)) due to the lower density of trees per hectare in agroforestry(139 trees in agroforestry vs 204 trees in monoculture). On a per hectare basis, soil C stocks pattern were similar to per tree stocking:They were higher in agroforestry at 330 Mg ha^(-1) than in monoculture 304 Mg ha^(-1). Higher C accumulation by agroforestry has a direct management implication in the sense that expanding agroforestry into agriculture production areas with short rotation and fast growing trees like poplar would encourage quicker and greater C sequestration. This could simultaneously fulfil the requirement of bioenergy plantation in Europe.
基金funded by the National Key Research and Development Program of China[Grant Number 2021YFD2201205]the Priority Academic Program Development of Jiangsu Higher Education Institutions(PAPD).
文摘Genomics research of Populus deltoides,an important timber species that is widely planted worldwide,is an important part of poplar breeding.Currently,the nuclear and chloroplast genome of P.deltoides have been sequenced,but its mitochondrial genome(mitogenome)has not been reported.To further explore the evolution and phylogeny of P.deltoides,the mitogenome of P.deltoides I-69 was assembled using reads from Nanopore and Illumina sequencing platforms and found to consist of 802,637 bp and three circular chromosomes(336,205,280,841,and 185,591 bp)containing 58 genes(34 protein-coding genes,21 tRNA genes,and 3 rRNA genes).RNA analysis in combination with several species showed signifi cantly fewer RNA editingsites in the mitogenomes of poplar and other angiosperms than in gymnosperms.Sequence transfer analysis showed extensive mitogenome rearrangements in Populus species,and with evolution from lower to higher plants,tRNA transfer from chloroplasts to mitochondria became increasingly frequent.In a phylogenetic analysis,the evolutionary status of P.deltoides was determined,and the section Populus was supported.Our results based on the fi rst report of a multicircular conformation of the Populus mitogenome provide a basis for further study of the evolution and genetics of P.deltoides and other Populus species and for breeding programs.
基金supported by National Natural Science Foundation of China (grants 31971567 and 31622015)Fundamental Research Funds for the Central Universities (YJ201936,SCU2020D003,SCU2021D006,SCU2022D003)。
文摘The strength of phylogeographic breaks can vary among species in the same area despite being subject to the same geological and climate history due to differences in biological traits.Several important phylogeographic breaks exist around the Sichuan Basin in Southwest China but few studies have focused on wind-dispersed plants.Here,we investigated the phylogeographic patterns and the evolutionary history of Populus lasiocarpa,a wind-pollinated and wind-dispersed tree species with a circum-Sichuan Basin distribution in southwest China.We sequenced and analyzed three plastid DNA fragments(ptDNA) and eight nuclear microsatellites(nSSRs) of 265 individuals of P.lasiocarpa from 21 populations spanning the entire distribution range.Distribution patterns based on nSSR data revealed that there are three genetic groups in P.lasiocarpa.This is consistent with the three phylogeographic breaks(Sichuan Basin,the Kaiyong Line and the 105°E line),where the Sichuan basin acts as the main barrier to gene flow between western and eastern groups.However,the distribution pattern based on ptDNA haplotypes poorly matched the phylogeographic breaks,and wind-dispersed seeds may be one of the main contributing factors.Species distribution modelling suggested a larger potential distribution in the last glacial maximum with a severe bottleneck during the last interglacial.A DIYABC model also suggested a population contraction and expansion for both western and eastern lineages.These results indicate that biological traits are likely to affect the evolutionary history of plants,and that nuclear molecular markers,which experience higher levels of gene flow,might be better indicators of phylogeographic breaks.
基金supported by grants from the Fundamental Research Funds for the Central Universities(Nos.2572018B03)the College Students Innovations Special Project funded by NEFU(No.202010225173)+1 种基金the Fundamental Research Funds for the Central Universities(Nos.2572019CT03)the Natural Science Foundation of Heilongjiang Province(No.ZD2019C003)。
文摘Acyl-CoA-binding proteins(ACBPs)are important for the transport of acyl groups for macro molecular biosynthesis involved in plant growth,development,and diverse stress(e.g.,cold,drought,salinity,and heavy metals)responses.Here,we report the phylogeny and characteristics of the ACBP family in the woody plant Populus trichocarpa.Eight genes encoding ACBP proteins were identified,and they are distributed on eight chromosomes in P.trichocarpa.These PtACBP genes were divided into four subgroups according to gene structure,conserved motifs and phylogenetic relationship.Promoter analysis revealed that cis-elements were related to stress response,phytohormone response,and physical and reproductive growth regulation.Expression levels of PtACBP genes varied among different organs,with the highest expression in leaves and the lowest in stems.Quantitative real-time PCR(qRT-PCR)analysis showed that under salinity-alkali stresses(i.e.,200 mM NaCl,75 mM Na2CO3,and 100 mM NaHCO3),four(PtACBP1,PtACBP3,PtACBP4 and PtACBP8)of eight PtACBP genes were significantly induced in roots and leaves.These data provide a comprehensive analysis of the ACBPs family in P.trichocarpa,which could be useful for gene function analyses.
基金supported by the National Natural Science Foundation of China (Nos. 32260285, 31860134, 32160367, 31800469)the Third Xinjiang Scientific Expedition and Research Program (Nos2022xjkk0301, 2021xjkk14002)+1 种基金the Youth Innovation Promotion Association of the Chinese Academy of Sciences (No. 2022445)the Tianchi Doctor Program of Xinjiang Autonomous Region (No.Y970000362)。
文摘Background: Trunk volume(Vt) is an essential parameter for estimating forest stand volume, biomass, and carbon sequestration potential. As the dominant tree species in desert riparian forests, Euphrates poplar(Populus euphratica) has a high proportion of irregularly shaped tree trunks along the Tarim River, NW China, where the habitat is very fragile owing to long-term water stress. This causes uncertainty in estimation accuracy as well as technical challenges for forest surveys. Our study aimed to acquire P. euphratica Vtusing terrestrial laser scanning(TLS) and to establish a species-specific Vtprediction model.Methods: A total of 240 individual trees were measured by TLS multiple-station in 12 sampling plots in three sections along the lower reaches of the Tarim River. Vtwas calculated by a definite integration method using trunk diameters(Di) at every 0.1-m tree height obtained from TLS, and all data were split randomly into two sets:70% of data were used to estimate the model parameter calibration, and the remaining 30% were used for model validation. Sixteen widely used candidate tree Vtestimation models were fitted to the TLS-measured Vtand tree structural parameter data, including tree height(H), diameter at breast height(DBH), and basal diameter(BD). All model performances were evaluated and compared by the statistical parameters of determination coefficient(R^(2)),root mean square error(RMSE), Bayesian information criterion(BIC), mean prediction error(ME), mean absolute error(MAE), and modeling efficiency(EF), and accordingly the best model was selected.Results: TLS point cloud reflection intensity(RI) has advantageous in the extraction of data from irregular tree trunk structures. The P. euphratica tree Vtvalues showed obvious differences at the same tree height(H). There was no significant correlation between Vtand H(R^(2)=0.11, P < 0.01), which reflected the irregularity of P. euphratica trunk shape in the study area. Among all the models, model(14): Vt=0.909DBH1.184H0.487BD0.836(R^(2)=0.97, RMSE=0.14) had the best prediction capability for irregularly shaped Vtwith the highest R^(2), BIC(-37.96), and EF(0.96), and produced a smaller ME(0.006) and MAE(1.177) compared to other models. The prediction accuracy was 93.18%.Conclusions: TLS point cloud RI has a potential for nondestructively measuring irregularly shaped trunk structures of P. euphratica and developed Vtprediction models. The multivariate models more effectively predicted Vtfor irregularly shaped trees compared to one-way and general volume models.
基金funded by the Natural Science Foundation of Heilongjiang Province,China(ZD2020C004)the Fundamental Research Funds for the Central Universities(2572019CT02).
文摘KANADI(KAN)is a plant-specific gene that controlled the polarity development of lateral organs.It mainly acted on the abaxial characteristics of plants to make the lateral organs asymmetrical.However,it had been less identified in woody plants.In this study,the members of the KAN gene family in Populus trichocarpa were identified and analyzed using the bioinformatics method.The results showed that a total of 8 KAN family members were screened out,and each member contained the unique GARP domain and conserved region of the family proteins.Phylogenetic analysis and their gene structures revealed that all KAN genes from P.trichocarpa,Arabidopsis thaliana,and Nicotiana benthamiana could be divided into four subgroups,while the eight genes in P.trichocarpa were classified into three subgroups,respectively.The analysis of tissue-specific expression indicated that PtKAN1 was highly expressed in young leaves,PtKAN6 was highly expressed in young leaves and mature leaves,PtKAN2,PtKAN5,and PtKAN7 were highly expressed in nodes and internodes,PtKAN8 was highly expressed in roots,and PtKAN3 and PtKAN4 showed low expression levels in all tissues.Among them,PtKAN2 and PtKAN6,and PtKAN4 and PtKAN5 might have functional redundancy.Under high nitrogen concentrations,PtKAN2 and PtKAN8 were highly expressed in mature stems and leaves,respectively,while PtKAN4,PtKAN5,and PtKAN7 were highly expressed in roots.This study laid a theoretical foundation for further study of the KAN genemediated nitrogen effect on root development.
基金Supported by projects of the Open Research Fund of State Key Laboratory of Modern Paleontology and Stratigraphy,Nanjing Institute of Geology and Palaeontology,CAS(No.213127)the National Natural Science Foundation of China(No.31470324)Higher Education Teaching Reform Project of Shenyang Normal University,2014(No.052/51400301).
文摘Traditionally,plant distribution is thought to be closely related to environmental factors.But recently,it is found that Populus,quite different from other plant taxa,adapted to negative environmental changes,and successfully migrated to different climate zones from its origin places of warm temperate zone.Conversely,Metasequoia is gradually tending to extinction from the Miocene to Quaternary.Based on above contrary cases,two response patterns of plant to negative environmental changes are proposed.One is active adaptation represented by Populus,the other is passive adaptation represented by Metasequoia.The plants of passive strategy characterized for desert prevention might be easily replaced by those of active strategy characterized for desert utilization.Fast growing plants,such as Populus with characteristics of drought and salt tolerance,wind and sand resistance,are selected in Tarim Basin in southern Xinjiang,China,as a good example of desert utilization in the construction of new highways and towns,not only serve as farmland shelterbelt in sandy area.In addition,Populus with high-altitude and cold adaptation has also been selected as an ideal tree planted in Tibet.Therefore,the idea of using Populus as one of the preferred pioneer trees to colonize Mars is proposed.
文摘[Objectives]The paper was to study the fine root distribution characteristics of Populus cathayana plantations at different ages in alpine sandy land.[Methods]With 5,10,15,20,and 25 years old P.cathayana plantation in the eastern margin of Gonghe Basin,Qinghai Province as the research objects,fine roots were collected by root core drilling method,and the differences of fine root biomass,root length density,average diameter and root tip number at the soil depths of 0-20,20-40,40-60,60-80 and 80-100 cm were analyzed.[Results]The total biomass density of P.cathayana plantation was mainly distributed in the soil layer of 0-60 cm,accounting for 76%of the entire soil layer,and its value increased with the increase in forest age.With the increase in different forest ages,the root length density,average diameter and root tip number of living fine roots in the soil layer of 0-60 cm accounted for 74%-81%of the entire soil layer,and the proportions in the soil layers of 60-80 and 80-100 cm were 9%-11%.The biomass density,root length density,average diameter and root tip number of living and dead fine roots of P.cathayana plantation increased with the increase of forest age.The root length density,average diameter and root tip number of P.cathayana fine roots showed a linear function change trend with the growth of forest age,which could be described by the linear function equation y=ax+b(a>0).The analysis results showed that the root length density,average diameter and root tip number of P.cathayana were significantly correlated with the total biomass density of fine roots,and the root length density and average diameter had an extremely positive correlation with the total biomass density.[Conclusions]In the future,P.cathayana plantation should be properly tended to promote the development of fine roots and maximize its ecological benefits.
基金the National Public Welfare Industry Research Project of China(201504406)National Natural Science Foundation of China(31770706)+1 种基金National Natural Science Foundation of China(31870379)Science Research Projects of Facility Horticulture Laboratory of Universities in Shandong(2018YY031)。
文摘Plant species produce different types of allelopathic chemicals in nature;however,little is known about the differential regulation of plant allelopathy.Because allelopathy caused by p-hydroxybenzoic acid(pHBA)is one of the main obstacles to continuous cropping of Populus×euramericana ‘Neva’,we examined gene expression dynamics in Neva leaves induced by pHBA.The expression of genes related to photosynthesis and respiration changed,while mRNA involved in regulating gene expression during allelopathy was degraded.Some miRNAs that are involved in plant allelopathy target crucial genes for regulating reactive oxygen species.Moreover,coexpression regulatory networks were constructed based on profiles of the identified miRNA-target interactions and the differentially expressed miRNA-target pairs.These findings provide a mechanistic framework for understanding allelopathy in plants.
文摘In order to select a suitable genotype for the studies on genetic transformation, the difference among three genotypes (DN04-18, DN04-25 and DN04-26) of Populus × euramericana (Populus deltoides × P. nigra) in terms of shoot regeneration was investigated in this paper. An efficient in vitro micropropagation method was successfully established for genotype DN04-18. The high frequency shoot regeneration (90.0%) from leaf discs was obtained in genotype DN04-18 on the modified Murashige and Skoog (mMS) medium with 30 g/L sucrose and 5.5 g/L agar (pH: 5.8) which was supplemented with 0.8 mg/L 6-benzyladenine (6-BA), while the shoot regeneration rates of DN04-25 and DN04-26 were below 40.0% even on the same medium. The optimum rooting medium was 1/2 mMS medium supplemented with 0.3-0.4 mg/L indole-3-butyric acid (IBA) for three genotypes. The results showed that genotype is a key factor for restricting shoot regeneration in establishing regeneration system of P. × euramerican hybrids. This micropropagation system of DN04-18 is expected to be suitable for the studies on gene transformation to improve drought tolerance of P. × euramerican.
