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Development and Preliminary Application of SYBR Green I Real-Time Fluorescence Quantitative PCR Method for Detecting Porcine Parvovirus Virus
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作者 SHEN Zhi-qiang WANG Jin-liang +3 位作者 GUO Xian-po WANG Xiao-hu WANG Ming ZHAO De-ming 《Animal Husbandry and Feed Science》 CAS 2009年第11期42-46,共5页
According to VP2 gene sequence of the porcine parvovirus virus strain NADL-2 (NC001718) available in GenBank (NC_001718), a pair of specific primer was designed, and the target fragment of 431 bp was obtained by P... According to VP2 gene sequence of the porcine parvovirus virus strain NADL-2 (NC001718) available in GenBank (NC_001718), a pair of specific primer was designed, and the target fragment of 431 bp was obtained by PCR amplification. The products were ligated with pMD18- T vector and then transformed into bacteria DH5α for recombinant plasmid extraction. After PCR identification and sequencing, recombinant plasmid was used as a standard template to establish the standard curve of SYBR Green I fluorescence quantitative PCR. Sensitivity test, specificity test and repeatability test were also determined. The results indicated that there was a good linear relationship between threshold cycle of the standard curve and template concentration, R2 =0.997 6. Tm ranged from 82.3 to 82.9 ℃, while the sensitivity was 72.1 copies/μl with good specificity and repeatability. The developed SYBR Green I real-time quantitative PCR method to detect PPV VP2 gene laid the basis for further studies on patho- oenesis, early clinical diaonosis of this virus and quantitative analysis of PPV infection. 展开更多
关键词 Porcine parvovirus virus real-time fluorescence quantitative PCR DETECTION
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Real-time fluorescent quantitative immuno-PCR method for determination of fluoranthene in water samples with a molecular beacon 被引量:2
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作者 Qiyan Ye Huisheng Zhuang +1 位作者 Chun Zhou Qiong'e Wang 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2010年第5期796-800,共5页
A reliable and sensitive competitive real-time fluorescent quantitative immuno-PCR (RTFQ-IPCR) assay using a molecular beacon was developed for the determination of trace fluoranthene (FL) in the environment.Under... A reliable and sensitive competitive real-time fluorescent quantitative immuno-PCR (RTFQ-IPCR) assay using a molecular beacon was developed for the determination of trace fluoranthene (FL) in the environment.Under optimized assay conditions,FL can be determined in the concentration range from 1 fg/mL to 100 ng/mL,with y=0.194x + 7.859,and a correlation coefficient of 0.967 was identified,with a detection limit of 0.6 fg/mL.Environmental water samples were successfully analyzed,recovery was between 90% and 116%,with intra-day relative standard deviation (RSD) of 6.7%-12.8% and inter-day RSD of 8.4%-15.2%.The results obtained from RTFQ-IPCR were confirmed by ELISA,showing good accuracy and suitability to analyze FL in field samples.As a highly sensitive method,the molecular beacon-based RTFQ-IPCR is acceptable and promising for providing reliable test results to make environmental decisions. 展开更多
关键词 FLUORANTHENE real-time fluorescent quantitative irnmuno-PCR molecular beacon
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Detection of Ratoon Stunting Disease in Virus-free Seedcane via Real-time Fluorescence Quantitative PCR 被引量:1
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作者 Ming DAN Song LI +3 位作者 Kunxing YU Limin LIU Hongjian LIU Manman LU 《Agricultural Biotechnology》 CAS 2012年第5期24-26,共3页
This study was to develop the real-time fluorescence quantitative PCR technique for detecting the ratoon stunting disease (RSD) in virus-free seedcane seedlings. Healthy tissue culture seedlings were obtained from s... This study was to develop the real-time fluorescence quantitative PCR technique for detecting the ratoon stunting disease (RSD) in virus-free seedcane seedlings. Healthy tissue culture seedlings were obtained from six plants of sugarcane ROC22, which had been confirmed RSD-positive by detecting the sugarcane juice, by employing the sugarcane seedlings production protocol. Real-time fluorescence quantitative PCR was used to detect RSD pathogens in tissue culture sam- pies. The results showed that target fragment of RSD pathogens was not found in all 10 samples in real-time fluorescence quantitative PCR, with the Ct values of 37 - 39. The healthy tissue culture sugarcane seedlings do not carry RSD pathogens, indicating that adopting healthy seedcane seedlings production technique could thoroughly get rid of RSD pathogens. 展开更多
关键词 SUGARCANE Virus-free seedcane Ratoon stunting disease real-time fluorescence quantitative PCR
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Detection and clinical significance of multidrug resistance-1 mRNA in bone marrow cells in children with acute lymphoblastic leukemia by real-time fluorescence quantitative RT-PCR 被引量:1
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作者 Yuan Lu Runming Jin +3 位作者 Kun Yang Lirong Sun Yan Xia Xiuying Pang 《Journal of Nanjing Medical University》 2008年第3期153-158,共6页
Objective: Multidrug resistance(MDR) is one of the most important reasons for treatment failure and recurrence of acute leukemia. Its manifestations are different in children with acute lymphoblastic leukemia(ALL... Objective: Multidrug resistance(MDR) is one of the most important reasons for treatment failure and recurrence of acute leukemia. Its manifestations are different in children with acute lymphoblastic leukemia(ALL) which may be due to different detection methods. This study was to detect the expression of MDR1 mRNA in bone marrow cells of children with ALL by real-time fluorescence- quantitative reverse transcription polymerase-chain reaction(FQ-RT-PCR), and combine minimal residual desease(MRD) detection by flow cytometry(FCM) and to study their relationship with treatment response and prognosis of ALL. Methods:The MDR1 mRNA levels in bone marrow cells from 67 children with ALL[28 had newly diagnosed disease, 27 had achieved complete remission(CR), 12 recurrent] and 22 children without leukemia were detected by FQ-RT-PCR. MRD was detected by FCM. The patients were observed for 9-101 months, with a median of 64 months. Results:Standard curves of human MDR1 and GAPDH genes were constructed successfully. MDR1 mRNA was detected in all children with a positive rate of 100%. The mRNA level of MDR1 was similar among the newly diagnosed ALL group, CR group, and control group(P 〉 0.05), but significantly higher in the recurrence group than that in newly diagnosed disease group and control group(0.50 ± 0.55 vs. 0.09 ± 0.26 and 0.12 ± 0.23, P〈 0.05). 54 ALL patients were followed up, and it was found that MDR1 mRNA level was significantly higher in ALL patients within 3 years duration than that of ALL patients with 3-6 years and over 6 years duration(0.63 ± 0.56 vs. 0.11 ± 0.12 and 0.04 ± 0.06, P〈 0.01). For the 28 children with newly diagnosed disease, the MDR1 mRNA level was similar between WBC 〉 50 ~ 109 group and WBC〈50 × 10^9 group(P〉 0.05). In the 33 CR patients, the MDR1 mRNA level was significantly higher in MRD〉10a group than that in MRD〈10a group(0.39 ± 0.47 vs. 0.03 ± 0.03, P 〈 0.05). Conclusion:The sensitivity and specificity of FQ-RT-PCR in detecting MDR1 mRNA in bone marrowy cells of children with ALL patients are high. MDR1 mRNA is expressed in children with and without leukemia. MDR1 mRNA is highly expressed in the CR ALL patients with high MRD, recurrence and short duration(within 3 years). Monitoring MRD and the MDR1 mRNA level might be helpful for individual treatment. 展开更多
关键词 LEUKEMIA CHILDREN multidrug resistance MDR1 gene minimal residual disease real-time fluorescence quantitative RT-PCR
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Synchronous Detection of DNA/RNA of Four Shrimp Viruses by Real-time Fluorescence Quantitative RT-PCR 被引量:1
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作者 Biao SHEN Zhongfa WANG +1 位作者 Xingjuan HU Songye GU 《Agricultural Biotechnology》 CAS 2014年第5期48-50,共3页
[ Objective] This study aimed to establish a simultaneous detection method of shrimp viruses by real-time fluorescence quantitative RT-PCR, to improve the efficiency of inspection and quarantine. [ Method] A novel rea... [ Objective] This study aimed to establish a simultaneous detection method of shrimp viruses by real-time fluorescence quantitative RT-PCR, to improve the efficiency of inspection and quarantine. [ Method] A novel real-time fluorescence quantitative RT-PCR assay was established and optimized for simultaneously detecting DNA/RNA of four shrimp viruses (WSSV, IHHNV, TSV and YHV ). [ Result] The optimized real-time fluorescence quantitative RT-PCR system gener- ated typical amplification curves with high amplification efficiencies (E = 1.06, 1.07, 0.92 and 0.92, respectively), good hnear relationship ( r = 1 ), uniform repeatability ( standard deviation = 0.05 - 0.46 ; variation coefficient = 0.26% - 1.62% ) and high sensitivity, exhibiting no significant differences compared with re- al-time fluorescence quantitative PCR (average error of Ct value = 0.04 -0.40; T = 0.53 -2.50; P 〉 0.05 ). The total detection time was about 1 h. [ Conclusion] The optimized real-time fluorescence quantitative RT-PCR system can be used for rapid detection of WSSV, IHHNV, TSV and YHV. 展开更多
关键词 real-time fluorescence quantitative RT-PCR Shrimp viruses Synchronous amplification of DNA/RNA
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Real-time fluorescent quantitative PCR非特异性扩增的研究进展 被引量:1
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作者 刘姗姗 岳素文 +1 位作者 江洪 王成彬 《临床检验杂志(电子版)》 2013年第2期340-342,共3页
Real-time fluorescent quantitative PCR(RT-qPCR)因其高效快速、操作简便、高度敏感等优点获得广泛应用,但因其强大的放大功能而容易出现非特异性扩增的问题,尤其是荧光染料法中更加明显。文章对RT-qPCR的原理、非特异性扩增的发生因... Real-time fluorescent quantitative PCR(RT-qPCR)因其高效快速、操作简便、高度敏感等优点获得广泛应用,但因其强大的放大功能而容易出现非特异性扩增的问题,尤其是荧光染料法中更加明显。文章对RT-qPCR的原理、非特异性扩增的发生因素、解决方案及该技术的应用前景进行了综述。 展开更多
关键词 real-time fluorescENT quantitative PCR 非特异性 应用
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Evaluation of Clinical Application of Chemiluminescence and Real-time,Fluorescence-based Quantitative PCR in Diagnosis of Epstein-Barr Virus lnfection
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作者 Huijuan Geng Yan Wang +2 位作者 Hao Wang Jirui Sun Hui Tang 《Journal of Clinical and Nursing Research》 2020年第4期21-24,共4页
Objective:To compare the effects of clinical application of chemiluminescence and real-time,fluorescence-based quantitative PCR in the detection Epstein-Barr virus(EBV).Methods:The data of chemiluminescence and real-t... Objective:To compare the effects of clinical application of chemiluminescence and real-time,fluorescence-based quantitative PCR in the detection Epstein-Barr virus(EBV).Methods:The data of chemiluminescence and real-time fluorescent quantitative PCR.fromipaEsfwo were suspected of being infectea w1tn rito1 roro January 2016 to January 2019 in our hospital were analyzed.The specific stage of EBV infection was analyzed,and the differences in results of the two detection methods were compared.Results:Chemiluminescence method was used to detect EBV infection during the active phase.The sensitivity of the chemiluminescence method was 76.7%(56/73)and the real-time quantitative PCRmethod was 90.4%(66/73).There was a statistical difference between the two detection methods(P<0.05).Conclusion:There was no statistical difference in positive predictive values between the chemiluminescence method and the real-time,fluorescence-based quantitative PCR method in the detection of EBV infection,but the sensitivity of chemiluminescence method is slightly lower than the real-time quantitative PCRmethod.It is noteworthy that chemiluminescence method is convenient and fast while the real-time,fluorescence-based quantitative PCR method is more accurate,which can provide a more accurate reference for clinical treatment. 展开更多
关键词 Epstein-Barr virus Chemiluminescence method real-time fluorescence-based quantitative PCR method
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Detection of Lactobacillus acidophilus in Fermented Material by Real-time Fluorescent Quantitative PCR 被引量:4
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作者 Guo Zihao Fang Hua +4 位作者 Xia Zhisheng Zhu Xiaoshi Sun Zhongchao Yu Hanli Xia Jiaji 《Animal Husbandry and Feed Science》 CAS 2016年第1期54-57,共4页
The species distinctive PCR primer of Lactobacillus acidophilus ( L. acidophilus) was designed according to 16S rRNA gene sequences of conunon Lac- tobacillus species in fermented material. Bacterial genome DNA of s... The species distinctive PCR primer of Lactobacillus acidophilus ( L. acidophilus) was designed according to 16S rRNA gene sequences of conunon Lac- tobacillus species in fermented material. Bacterial genome DNA of separated L. acidophilus in fermented sample was taken as template, and L. acidophilus in fer- mented material was conducted the quantitative determination by real-time quantitative PCR (RT-PCR). Analysis on RT-PCR results shown that contents of L. aci- dophilus in the test sample reached 1.5 billion CFU / g. Test results shown that contents of L. acidophilus in fermented material could be detected accurately by the established RT-PCR method in the test. indicating that the established RT-PCR method could be aookued to the detection of L. acidophilus in fermented material. 展开更多
关键词 real-time fluorescent quantitative PCR Lactobacillus acidophilus quantitative analysis Fermented material
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Application of Real-time Fluorescent Quantitative PCR in Studies on Plants 被引量:3
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作者 Yueping MA Silan DAI Yanrong MA 《Agricultural Biotechnology》 CAS 2012年第1期1-7,共7页
Real-Lime fluorescent quantitative PCR is a method for quantitative analysis of gene expression developed in recent years, which has been widely used in various fields such as basic scientific research, clinical diagn... Real-Lime fluorescent quantitative PCR is a method for quantitative analysis of gene expression developed in recent years, which has been widely used in various fields such as basic scientific research, clinical diagnosis, disease study, drug research and development since its appearance. It starts relatively late in study on plants, but has already been used for analysis of gene expression in plants and gene identification of exogenous genes. The principles or advantages and dis- advantages of real-time fluorescent quantitative PCR, or its potential problems and condition optimizations in tests were introduced in this study, and then the appli- cation and prospect of real-time fluorescent quantitative PCR in study on plants were also been discussed. 展开更多
关键词 real-time fluorescent quantitative PCR (FQ-PCR) PLANT C ene expression
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Establishment of a Real-time Fluorescent Quantitative PCR Assay for Detection of Genetically Modified Maize Line MON88017
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作者 Jun SONG Dong WANG 《Agricultural Biotechnology》 CAS 2017年第1期15-19,22,共6页
In order to improve the standardized technical systems of quantitative analyses for genetically modified organisms (GMOs) and products, ensure bio-safety and reduce ecological risk in China, a real-time fluorescent ... In order to improve the standardized technical systems of quantitative analyses for genetically modified organisms (GMOs) and products, ensure bio-safety and reduce ecological risk in China, a real-time fluorescent quantitative PCR assay was established for detection of genetically modified maize line MON88017. The established method was evaluated based on the specificity, sensitivity, accuracy and measurement uncertainty. The results showed that the established method had strong specificity in detection of genetically modified maize line MON88017. 1.50% MON88017 sample was detected with 29 replica- tions. The average measured value ( 1. 541% ) was close to the actual value ( 1.50% ) and the relative deviation was 2.70%. The variation coefficient of the measured value was 0.110 g ; the recovery was 100.00% and the measurement uncertainty was 0. 096. The limit of detection for genetically modified maize line MON88017 with the established method was 5 copies at the 97.5% confidence level. Thus, the real-time fluorescent quantitative PCR assay established in this study exhibited high specificity, accuracy and sensitivity, which could provide technical support for the safety supervision of genetically modified organ- isms and products in China. 展开更多
关键词 Genetically modified maize real-time fluorescent quantitative PCR SPECIFICITY Sensitivity ACCURACY Measurement uncertainty
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Real-time quantitative optical method to study temperature dependence of crack propagation process in colloidal photonic crystal film
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作者 林冬风 徐余颛 +4 位作者 石将建 张瑜 罗艳红 李冬梅 孟庆波 《Chinese Physics B》 SCIE EI CAS CSCD 2015年第7期518-523,共6页
A real-time quantitative optical method to characterize crack propagation in colloidal photonic crystal film(CPCF)is developed based on particle deformation models and previous real-time crack observations. The crac... A real-time quantitative optical method to characterize crack propagation in colloidal photonic crystal film(CPCF)is developed based on particle deformation models and previous real-time crack observations. The crack propagation process and temperature dependence of the crack propagation rate in CPCF are investigated. By this method, the crack propagation rate is found to slow down gradually to zero when cracks become more numerous and dense. Meanwhile, with the temperature increasing, the crack propagation rate constant decreases. The negative temperature dependence of the crack propagation rate is due to the increase of van der Waals attraction, which finally results in the decrease of resultant force. The findings provide new insight into the crack propagation process in CPCF. 展开更多
关键词 colloidal photonic crystal crack propagation temperature real-time quantitative optical method
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Establishment of a new quantitative detection approach to adefovir-resistant HBV and its clinical application 被引量:5
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作者 Zhao, Wei-Feng Shao, You-Lin +4 位作者 Chen, Liang-Yun Wu, Jin-Hua Zhu, Yi-Ling Gan, Jian-He Xiong, Hui 《World Journal of Gastroenterology》 SCIE CAS CSCD 2010年第10期1267-1273,共7页
AIM:To establish the more feasible and sensitive assessment approach to the detection of adefovir (ADV) resistance-associated hepatitis B virus (HBV) quasispecies.METHODS: Based on the characteristics of rtA181V/T and... AIM:To establish the more feasible and sensitive assessment approach to the detection of adefovir (ADV) resistance-associated hepatitis B virus (HBV) quasispecies.METHODS: Based on the characteristics of rtA181V/T and rtN236T mutations, a new approach based on real-time fluorescent quantitative polymerase chain reaction (RT-PCR) was established for the detection of ADV-resistant HBV quasispecies, total HBV DNA, rtA181 and rtN236 mutations in blood samples from 32 chronic hepatitis B (CHB) patients with unsatisfactory curative effect on ADV and compared with routine HBV DNA sequencing.RESULTS: Both the sensitivity and specificity of this new detection approach to ADV-resistant HBV quasispecies were 100%, which were much higher than those of direct HBV DNA sequencing. The approach was able to detect 0.1% of mutated strains in a total plasmid population. Among the 32 clinical patients, single rtA181 and rtN236T mutation and double rtA181T and rtN236T mutations were detected in 20 and 8, respectively, while ADV-resistant mutations in 6 (including, rtA181V/T mutation alone in 5 patients) and no associated mutations in 26.CONCLUSION: This new approach is more feasible and efficient to detect ADV-resistant mutants of HBV and ADV-resistant mutations before and during ADV treatment with a specificity of 100% and a sensitivity of 100%. 展开更多
关键词 Chronic hepatitis B ADEFOVIR Drug resistance quantitative detection real-time fluorescent quantitative polymerase chain reaction
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牛冠状病毒TaqMan荧光定量PCR检测方法的建立及应用
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作者 蒲鹏 李晨露 +2 位作者 张琪 吴发兴 许信刚 《动物医学进展》 北大核心 2024年第2期7-10,共4页
为建立牛冠状病毒TaqMan荧光定量PCR检测方法,根据GenBank收录的牛冠状病毒AKS-01株N基因序列(KU886219)保守区设计特异性引物和探针,构建重组质粒并进行反应条件优化、特异性试验、重复性试验以及敏感性试验,建立一种检测BCoV的TaqMan... 为建立牛冠状病毒TaqMan荧光定量PCR检测方法,根据GenBank收录的牛冠状病毒AKS-01株N基因序列(KU886219)保守区设计特异性引物和探针,构建重组质粒并进行反应条件优化、特异性试验、重复性试验以及敏感性试验,建立一种检测BCoV的TaqMan荧光定量PCR方法。结果显示,建立的牛冠状病毒TaqMan荧光定量PCR检测方法特异性、敏感性和重复性均良好。该方法BCoV重组质粒标准品在5.75×10^(7)~5.75×10^(3)copies/μL时与Ct值呈现良好线性关系,该方法对牛轮状病毒、牛传染性鼻气管炎病毒、牛病毒性腹泻病毒、牛副流感病毒3型均无交叉反应,特异性良好;该方法对BCoV重组质粒标准品最低检测限为5.75×10^(1)copies/μL;批内和批间重复性试验结果稳定,变异系数均小于2%。利用所建立的TaqMan荧光定量PCR方法对收集的132份样品进行检测,与常规PCR相比,两者符合率为96.21%,可为BCoV的临床检测和流行病学调查提供技术支持。 展开更多
关键词 牛冠状病毒 TaqMan荧光定量PCR 检测方法
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基于Hsp70基因的绵羊肺炎支原体TaqMan检测方法的建立及其遗传演化分析
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作者 江锦秀 张靖鹏 +3 位作者 林裕胜 刘维巍 胡奇林 万春和 《畜牧兽医学报》 CAS CSCD 北大核心 2024年第4期1684-1695,共12页
热休克蛋白70 (heat shock protein 70,Hsp70)是绵羊肺炎支原体(Mycoplasma ovipneumoniae, Movi)的重要膜蛋白,是机体内高度保守的生物分子,但在种间差异大,可作为分子生物学检测的候选靶区。为建立基于Hsp70基因的Movi通用型TaqMan实... 热休克蛋白70 (heat shock protein 70,Hsp70)是绵羊肺炎支原体(Mycoplasma ovipneumoniae, Movi)的重要膜蛋白,是机体内高度保守的生物分子,但在种间差异大,可作为分子生物学检测的候选靶区。为建立基于Hsp70基因的Movi通用型TaqMan实时荧光定量PCR(qPCR)检测方法,并进一步了解其遗传变异情况,本研究基于GenBank中Movi的Hsp70基因特征,设计特异性的引物及探针,建立了基于Hsp70基因的绵羊肺炎支原体qPCR检测方法。应用建立的检测方法对88份山羊鼻拭子样品及43份疑似羊支原体性肺炎(Mycoplasmal pneumonia of sheep and goats, MPSG)病料进行检测。将检测结果为Movi阳性的肺组织样品进行分离鉴定,并对分离株Hsp70基因进行序列分析。结果显示,建立的qPCR检测方法其相关系数为1.00,扩增效率为96.0%,斜率为-3.411,Y轴截距为37.29。特异性强,与丝状支原体山羊亚种(Mycoplasma mycoides subsp.capri, Mmc)、山羊支原体山羊肺炎亚种(Mycoplasma capricolum subsp.capripneumoniae, Mccp)、莱氏无胆甾原体(Acholeplasmalaidlawii, AL)、无乳支原体(Mycoplasma agalactiae, Maga)、伪结核棒状杆菌(Corynebacterium pseudotuberculosis, CP)、羊口疮病毒(orf virus, ORFV)、牛支原体(Mycoplasma bovis, Mb)等牛羊常见病原均无交叉反应;敏感性高,最低检测限为5.72 copies·μL^(-1);重复性优,组内变异系数和组间变异系数均小于1.00%。6株Movi分离株Hsp70基因全长均为1 818 bp,与其它Movi参考株核苷酸和氨基酸同源性分别为96.0%~99.4%和98.0%~100.0%;进一步分析发现,山羊源Movi均比绵羊源多1个N-糖基化位点。遗传演化分析表明,其均处于ClusterⅠA亚分支(均为山羊源)。综上,本研究建立了特异性强、敏感性高、重复性优的基于Hsp70基因的Movi的qPCR检测方法。序列分析发现,不同来源Movi的Hsp70基因核苷酸同源性高;遗传演化分析证实,Movi福建株与山羊源分离株遗传关系较近。本研究不仅为Movi临床诊断提供了技术支持,更为进一步了解Movi遗传演化规律提供参考。 展开更多
关键词 绵羊肺炎支原体 HSP70基因 TaqMan实时荧光定量PCR方法 序列分析
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美洲鳗鲡腺瘤病毒(AEAdoV)普通PCR和SYBR Green I实时荧光定量PCR检测方法的建立及应用
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作者 孔文迪 陈曦 +1 位作者 杨金先 葛均青 《水产学报》 CAS CSCD 北大核心 2024年第4期358-365,共8页
为建立美洲鳗鲡腺瘤病毒(AEAdoV)的检测方法,根据AEAdoV福建株(AEAdoVFJ)的superfamily 3 helicases(S3H)序列,设计引物,建立了AEAdoV的普通PCR和qPCR检测方法;进一步评价检测方法的灵敏性、特异性及重复性,利用2种方法对美洲鳗鲡“出... 为建立美洲鳗鲡腺瘤病毒(AEAdoV)的检测方法,根据AEAdoV福建株(AEAdoVFJ)的superfamily 3 helicases(S3H)序列,设计引物,建立了AEAdoV的普通PCR和qPCR检测方法;进一步评价检测方法的灵敏性、特异性及重复性,利用2种方法对美洲鳗鲡“出血性烂鳃”病料进行了检测,并对美洲鳗鲡体内不同组织的病毒含量进行分析。结果显示,普通PCR扩增的目的片段长度约300 bp,利用其构建的qPCR质粒标准品,其拷贝数与qPCR阈值循环数(C_(t))线性关系良好,线性范围广,标准曲线相关系数(R2)达到0.999,扩增效率为105.067%。建立的普通PCR法和qPCR的最低检测AEAdoV拷贝数分别为100个和10个。2种方法均可特异性检测AEAdoV,而对蛙虹彩病毒(RGV)、鳗鲡疱疹病毒(AngHV)、鲤疱疹病毒(KHV)、对虾白斑综合征病毒(WSSV)、日本鳗鲡内皮细胞坏死病毒(JEAdoV)和花鳗鲡腺瘤病毒(MEAdoV)均无扩增反应。qPCR法的组内和组间变异系数均小于2%,表明其重复性良好。临床应用结果显示,35份美洲鳗鲡“出血性烂鳃”病料,采用普通PCR法的AEAdoV检出率为82.8%,而qPCR法的AEAdoV检出率为97%。对美洲鳗鲡不同组织的病毒含量分析结果显示,心脏、肝脏、鳃、鳍的AEAdoV相对含量较高,而黏液、皮肤和脾脏的病毒含量相对较低。研究表明,建立的AEAdoV的灵敏度高、特异性强的普通PCR和qPCR检测方法,证实AEAdoV与美洲鳗鲡“出血性烂鳃”病密切相关,且在感染鳗鲡主要组织中都存在。实验结果对于研究AEAdoV的致病性,开展其流行情况和病原学情况分析具有重要意义。 展开更多
关键词 美洲鳗鲡腺瘤病毒(AEAdoV) 普通PCR 荧光定量PCR SYBR GreenⅠ 检测方法
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实时荧光定量PCR检测猴痘病毒的方法研究
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作者 冯俊霞 陈锦峰 +3 位作者 崔晓虎 夏语嫣 薛冠华 袁静 《遵义医科大学学报》 2024年第5期508-512,521,共6页
目的建立猴痘病毒(mpox virus)的实时荧光定量PCR(RT-PCR)检测方法。方法以猴痘病毒F3L基因为靶序列,设计特异性引物和探针,建立猴痘病毒RT-PCR检测方法,并对方法的灵敏度、特异性和重复性进行检测;对疑似猴痘阳性的人脓拭子临床样本核... 目的建立猴痘病毒(mpox virus)的实时荧光定量PCR(RT-PCR)检测方法。方法以猴痘病毒F3L基因为靶序列,设计特异性引物和探针,建立猴痘病毒RT-PCR检测方法,并对方法的灵敏度、特异性和重复性进行检测;对疑似猴痘阳性的人脓拭子临床样本核酸进行检测,对RT-PCR方法检测临床样本能力进行评价。结果本研究建立的RT-PCR检测方法可实现猴痘病毒的特异性检测,与天花、痘苗、牛痘等其他正痘病毒无交叉反应,检测重复性好,最低检测限为103copies/μL。可以对人皮肤拭子样本中的猴痘病毒进行准确检测。结论本研究建立了猴痘病毒的RT-PCR检测方法,可在临床样本中快速、特异、灵敏的检测猴痘病毒。 展开更多
关键词 猴痘病毒 实时荧光定量PCR 快速检测方法 F3L基因
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鸡圆环病毒SYBR GreenⅠ实时荧光定量PCR检测方法的建立
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作者 陈佳圣 赵天琪 +3 位作者 刘东华 孙祥茹 陈文德 李根 《中国家禽》 北大核心 2024年第1期56-61,共6页
为快速准确检测鸡圆环病毒(CCV),试验根据CCV Rep基因设计特异性引物,以CCV阳性病料提取的DNA为模板进行PCR扩增,构建CCV重组质粒,建立检测CCV的SYBR GreenⅠ实时荧光定量PCR方法。结果显示:试验建立的方法对2.87×10^(8)~2.87×... 为快速准确检测鸡圆环病毒(CCV),试验根据CCV Rep基因设计特异性引物,以CCV阳性病料提取的DNA为模板进行PCR扩增,构建CCV重组质粒,建立检测CCV的SYBR GreenⅠ实时荧光定量PCR方法。结果显示:试验建立的方法对2.87×10^(8)~2.87×10^(1)copies/μL浓度范围的CCV重组质粒标准品呈现良好的线性关系,相关系数(R^(2))为0.9936,灵敏度比常规PCR高100倍;该方法对鸡传染性贫血病毒、新城疫病毒、传染性支气管炎病毒等常见鸡病毒性病原以及多杀性巴氏杆菌、禽致病性大肠杆菌、鸡白痢沙门氏菌无特异性扩增,批内和批间变异系数均不超过1%;该方法对60份疑似CCV感染临床样品检测结果显示,CCV阳性检出率(16.67%)高于常规PCR。上述结果表明,研究建立的CCV SYBR GreenⅠ实时荧光定量PCR方法具有良好的敏感性、特异性和重复性,检出限为2.87×10^(1)copies/μL,可以用于CCV的快速定量检测。 展开更多
关键词 鸡圆环病毒 SYBR GreenⅠ实时荧光定量PCR 检测方法
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肺癌组织中GALNT7的表达变化及其临床意义
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作者 张正攀 周新明 +3 位作者 冯珍珍 蔡子仁 徐之璨 向选慧 《临床肿瘤学杂志》 CAS 2024年第2期131-136,共6页
目的 探讨N-乙酰氨基半乳糖转移酶7(GALNT7)在肺癌组织中的表达及其与临床病理特征和预后的关系。方法 收集2016年2月至2018年2月深圳市龙华区人民医院90例接受手术切除的肺癌患者癌组织及配对癌旁正常组织标本。采用免疫组织化学法检... 目的 探讨N-乙酰氨基半乳糖转移酶7(GALNT7)在肺癌组织中的表达及其与临床病理特征和预后的关系。方法 收集2016年2月至2018年2月深圳市龙华区人民医院90例接受手术切除的肺癌患者癌组织及配对癌旁正常组织标本。采用免疫组织化学法检测肺癌组织及癌旁正常组织中GALNT7蛋白表达;采用实时荧光定量PCR(qPCR)检测肺癌组织及癌旁正常组织中GALNT7 mRNA的相对表达水平;分析GALNT7 mRNA表达与肺癌患者的临床病理特征及预后的关系。Kaplan-Meier法分析GALNT7表达与患者生存率之间的关系;Cox比例风险回归模型分析影响患者预后的独立因素。结果 GALNT7蛋白在肺癌组织中的高表达率为55.56%(50/90),显著高于癌旁正常组织中的11.11%(10/90),差异有统计学意义(P<0.05)。肺癌组织的GALNT7 mRNA表达水平为1.51±0.25,显著高于癌旁正常组织(1.02±0.18),差异有统计学意义(P<0.05)。GALNT7 mRNA表达与肿瘤大小、吸烟史、TNM分期、分化程度及淋巴结转移有关(P<0.05)。Kaplan-Meier生存分析显示,GALNT7低表达组患者的5年生存率显著高于高表达组(P<0.05);多因素Cox回归分析显示,淋巴结转移、GALNT7水平是影响肺癌患者预后的独立因素(P<0.05)。结论 GALNT7异常高表达参与肺癌的发生,且有作为肺癌患者预后预测分子标志物的潜力。 展开更多
关键词 肺癌 GALNT7 免疫组织化学法 实时荧光定量PCR(qPCR) 预后
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副结核分支杆菌实时荧光定量PCR检测方法的建立及应用
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作者 平宇明 张宏莉 +8 位作者 班亚星 刘建奇 任希恩 邬彩丽 刘东霞 徐丽媛 杨雪娇 常华 李劼 《动物医学进展》 北大核心 2024年第7期1-6,共6页
为加强副结核分支杆菌(MAP)的检测、监测与防控,建立MAP荧光定量PCR(qPCR)检测方法,根据国内MAP流行菌株特异性插入序列IS900设计1对特异性引物和探针,构建重组阳性质粒用作建立qPCR的模板,优化反应体系和条件,验证该方法的特异性、敏... 为加强副结核分支杆菌(MAP)的检测、监测与防控,建立MAP荧光定量PCR(qPCR)检测方法,根据国内MAP流行菌株特异性插入序列IS900设计1对特异性引物和探针,构建重组阳性质粒用作建立qPCR的模板,优化反应体系和条件,验证该方法的特异性、敏感性和重复性。结果显示,该方法最低检测限为5拷贝/μL;重复试验中批内和批间变异系数均小于4%;与牛传染性鼻气管炎病毒、牛副流感病毒3型、牛轮状病毒、牛病毒性腹泻病毒、牛支原体、肺炎克雷伯菌和曼氏杆菌等病原检测无交叉反应,能特异性检出MAP。应用建立的qPCR开展了内蒙古自治区6个市的MAP临床样品检测和流行情况分析,结果显示MAP平均阳性率为0.85%(6/704)。结果表明,成功建立了MAP的实时荧光定量PCR检测方法,可用于临床中MAP的监测和调查,为MAP疾病诊断与监控提供了快捷的方法。 展开更多
关键词 副结核分支杆菌 实时荧光定量PCR 检测方法 感染调查
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实时荧光定量PCR检测不同结核标本及其联合玻璃珠磨菌法检测的价值
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作者 张鑫 周辰刚 《临床和实验医学杂志》 2024年第6期637-641,共5页
目的研究实时荧光定量聚合酶链式反应(qRT-PCR)与玻璃珠磨菌法联合用于不同结核标本检测中的价值。方法以回顾性分析为法,收集并分析2021年1月至2022年6月在上海交通大学医学院附属仁济医院住院与门诊诊治的疑似结核病患者1200份不同临... 目的研究实时荧光定量聚合酶链式反应(qRT-PCR)与玻璃珠磨菌法联合用于不同结核标本检测中的价值。方法以回顾性分析为法,收集并分析2021年1月至2022年6月在上海交通大学医学院附属仁济医院住院与门诊诊治的疑似结核病患者1200份不同临床标本的qRT-PCR测定结果,其中血液样本469份,胸腔积液标本322份,心包积液标本16份,尿液标本25份,气管(支气管)肺泡灌洗液标本8份,腹腔积液标本34份,脑脊液标本143份,脓液标本31份,痰液标本152份;同时,对41份痰液标本予以玻璃珠振荡磨菌前后qRT-PCR定量检测效果分析。结果1200份不同结核标本的总检测阳性率为15.83%(190/1200),其中检出率最高的为气管(支气管)肺泡灌洗液标本,占比为37.50%(3/8),且门诊患者阳性率最高,占比为40.00%(2/5);脓液标本检出率第二,占比为35.48%(11/31),且住院患者阳性率最高,占比为38.46%(10/26);痰液标本检出率第三,占比为30.26%(46/152)。41份痰液标本经玻璃珠磨菌处理5 min之后,qRT-PCR检测核酸浓度明显高于处理前,差异有统计学意义(P<0.05);其中,14份痰液标本提升了菌株数量级,且11份含菌量为10^(2)拷贝/mL痰液标本于振荡研磨处理之后,7份痰液标本提升至了10^(3)拷贝/mL菌量数量级,磨菌处理后阳性检出率明显高于磨菌处理前,差异有统计学意义(P<0.05)。结论气管(支气管)肺泡灌洗液标本、脓液标本、痰液标本检测中qRT-PCR的检出率较高,而qRT-PCR在其他结核标本检测中的检出率较低,qRT-PCR联合玻璃珠磨菌法检测可有效提升临床结核标本阳性检出率。 展开更多
关键词 实时荧光定量聚合酶链式反应 玻璃珠磨菌法 结核分枝杆菌 检测
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