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RESTRICTION FRAGMENT LENGTH POLYMORPHISMS ASSOCIATED WITH FACTOR Ⅷ CARRIER DETECTION USING DNA RFLPs IN CHINESE
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作者 汪运山 王德芬 曾畿生 《Medical Bulletin of Shanghai Jiaotong University》 CAS 1992年第2期28-34,共7页
RFLPs for XbaI, BelI and BglI sites of human FⅧwere informative for 48%, 41% and 15% of females studied, respectively. BglI RFLP is different from that reported by Chan et al, a fact suggests Yangtze River region pop... RFLPs for XbaI, BelI and BglI sites of human FⅧwere informative for 48%, 41% and 15% of females studied, respectively. BglI RFLP is different from that reported by Chan et al, a fact suggests Yangtze River region population of China would be at variance with the Southern Chinese population in certain RFLP distribution. TaqI allelic system Ⅰin the DXS52 region also shows the same variance among them, but heterozygous rate 0f 71% for system Ⅰ(alleles 1 to 8) and 49% for system Ⅱ(αand βalleles) were very similar. Using the Bell/XbaI RFLPs, accurate information could be obtained from this study for 56% of women who were at risk for hemophilia A (HA) carriership. The carrier of the remaining 44% could be determined by utilizing the TaqI RFLP. In addition, we report a new intergenie polymorphism (9%) at DXS115 as a marker for detection of heterozygotes in families at risk for HA. The advantage of using the XbaI/KpnI RFLP is that both the intragemie RFLP and the new intergenie RFLP can be evaluated on the same blot at the same time. 展开更多
关键词 restriction fragment length POLYMORPHISM HEMOPHILIA A CARRIER detection X CHROMOSOME allelic frequencies
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Comparing the frequencies of restriction fragment length polymorphisms for dystrophin gene in Chinese with those from Japanese and Caucasian populations
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作者 YULong MINQINWANG +4 位作者 QUNBINWANG WEIYIWANG YUMEIYANG JINGDEZHU SHOUYUANZHAO 《Cell Research》 SCIE CAS CSCD 1993年第1期38-38,40-47,共9页
The restriction fragment length polymorphisms distribution and frequency of dystrophin gene in Chinese were studied by using 14 subclones of the entire 14kb cDNA for the dystrophin as hybridization probes. Allelic fra... The restriction fragment length polymorphisms distribution and frequency of dystrophin gene in Chinese were studied by using 14 subclones of the entire 14kb cDNA for the dystrophin as hybridization probes. Allelic fragments were detected in hybridization patterns of PvuII/1a, Taq I/2b-3, Taq I/5b-7, and Xba I/10. Among them, the allelic fragments (26kb and 3.8kb) in PvuII/2b-3 pattern and the allelic fragments (10.0kb and 8.4kb) in Taq I/5b-7 patterns had never been reported previously. Compared with the data from Caucasians and Japanese, it indicated that there was a significant difference (P<0.01) of the allelic fragment frequency in Taq I/2b-3 and Xba I/10 patterns between Chinese and Caucasians. The frequencies of allelic fragments A2 (5.6kb) in Taq I/8 and A2 (10.7kb) in EcoR V/9 were high in Caucasians, yet had not been detected in Chinese, the differences were also highly significant. But in Chinese and Caucasians, the B1B2 allelic frequencies in Taq I/5b-7 are the same. As to the frequency of the allelic fragments A1A2 and B1B2 in Pvu II/1a, there was no significant difference between Chinese and Japanese. 展开更多
关键词 dystrophin . gene restriction fragment length polymorphism.
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Development of Fok-I based nested polymerase chain reaction-restriction fragment length polymorphism analysis for detection of hepatitis B virus X region V5M mutation 被引量:2
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作者 Hong Kim Seok-Hyun Hong +2 位作者 Seoung-Ae Lee Jeong-Ryeol Gong Bum-Joon Kim 《World Journal of Gastroenterology》 SCIE CAS 2015年第47期13360-13367,共8页
AIM: To develop a Fok-I nested polymerase chain reaction(PCR)-restriction fragment length polymorphism analysis(PRA) method for the detection of hepatitis B virus X region(HBx) V5 M mutation.METHODS: Nested PCR was ap... AIM: To develop a Fok-I nested polymerase chain reaction(PCR)-restriction fragment length polymorphism analysis(PRA) method for the detection of hepatitis B virus X region(HBx) V5 M mutation.METHODS: Nested PCR was applied into DNAs from 198 chronic patients at 2 different stages [121 patients with hepatocellular carcinoma(HCC) and 77 carrier patients]. To identify V5 M mutants, digestion of nested PCR amplicons by the restriction enzyme Fok-I(GGA TGN9↓) was done. For size comparison, the enzymetreated products were analyzed by electrophoresis on 2.5% agarose gels, stained with ethidium bromide, and visualized on a UV transilluminator.RESULTS: The assay enabled the identification of 69 patients(sensitivity of 34.8%; 46 HCC patients and 23 carrier patients). Our data also showed that V5 M prevalence in HCC patients was significantly higher than in carrier patients(47.8%, 22/46 patients vs 0%, 0/23 patients, P < 0.001), suggesting that HBx Ag V5 M mutation may play a pivotal role in HCC generation in chronic patients with genotype C infections.CONCLUSION: The Fok-I nested PRA developed in this study is a reliable and cost-effective method to detect HBx Ag V5 M mutation in chronic patients with genotype C2 infection. 展开更多
关键词 Hepatitis B virus X ANTIGEN Polymerasechain reaction-restriction fragment length polymorphismanalysis V5M MUTATION Hepatocellur carcinoma
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Diversity of Microflora in Colonic Mucus from Severe Ulcerative Colitis Patients Analyzed by Terminal Restriction Fragment Length Polymorphism and Clone Libraries of Bacterial 16S rRNA Gene Sequences 被引量:1
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作者 I-Nung Huang Yuri Sato +8 位作者 Mitsuo Sakamoto Moriya Ohkuma Shinobu Ohnuma Takeshi Naitoh Chikashi Shibata Akira Horii Junko Nishimura Haruki Kitazawa Tadao Saito 《Advances in Microbiology》 2014年第13期857-870,共14页
Although the gut microflora is thought to be an essential factor in the development of ulcerative colitis (UC), the entire gut microflora occurring in UC remains unknown. Most studies use feces to represent the microf... Although the gut microflora is thought to be an essential factor in the development of ulcerative colitis (UC), the entire gut microflora occurring in UC remains unknown. Most studies use feces to represent the microflora distribution;however, here we analyzed the bacterial diversity in colonic mucus from UC patients receiving colectomy surgery and control patients. The diversity of microflora was investigated using a combination of terminal restriction fragment length polymorphism (T-RFLP) and clone library analyses of the 16S rRNA gene sequences. In the T-RFLP analysis, the number of terminal restriction fragments (T-RFs) decreased significantly in UC patients when compared to control samples. Also in the clone library analysis, the number of operational taxonomic units (OTU) and the Shannon diversity index were reduced significantly in UC patients. These molecular analyses reveal an overall dysbiosis in UC patients. No specific pathogen was found, and a strong negative correlation in relative abundance of bacterial populations was observed between the phyla Bacteroidetes and Firmicutes in the UC patients. This is the first report showing a significant correlation between these two phyla, which may be important characteristics in the pathogenesis of UC. 展开更多
关键词 ULCERATIVE Colitis MICROFLORA Terminal restriction fragment length Polymorphism 16S rRNA Gene CLONE Library
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Antibiotic-Resistant Bacterial Group in Field Soil Evaluated by a Newly Developed Method Based on Restriction Fragment Length Polymorphism Analysis 被引量:1
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作者 Katsuji Watanabe Naoto Horinishi Kunimasa Matumoto 《Advances in Microbiology》 2015年第12期807-816,共10页
Spreading of antibiotic resistant bacteria into environment is becoming a major public health problem, implicating affair of the indirect transmission of antibiotic resistant bacteria to human through drinking water, ... Spreading of antibiotic resistant bacteria into environment is becoming a major public health problem, implicating affair of the indirect transmission of antibiotic resistant bacteria to human through drinking water, or vegetables, or daily products. Until now, the risk of nosocomial infection of antibiotic resistant bacteria has mainly been evaluated using clinical isolates by phenotypic method. To evaluate a risk of community-acquired infection of antibiotic resistant bacteria, a new method has been developed based on PCR-RFLP without isolation. By comparing restriction fragment lengths of the 16S rDNA gene from bacterial mixture grown under antibiotic treatment to those simulated from the DNA sequence, bacterial taxonomies were elucidated using the method of Okuda and Watanabe [1] [2]. In this study, taxonomies of polymyxin B resistant bacteria group in field soils, paddy field with organic manure and upland field without organic manure were estimated without isolation. In the both field soils, the major bacteria grown under the antibiotic were B. cereus group, which had natural resistance to this antibiotic. In field applied with organic manure, Prevotella spp., and the other Cytophagales, which were suggested to be of feces origin and to acquire resistance to the antibiotic, were detected. When numbers of each bacterial group were roughly estimated by the most probable number method, B. cereus group was enumerated to be 3.30 × 106 MPN/g dry soil in paddy field soil and 1.32 × 106 MPN/g dry soil in upland filed. Prevotella spp. and the other Cytophagales in paddy field were enumerated to be 1.31 × 106 MPN, and 1.07 × 106 MPN·g-1 dry soil. 展开更多
关键词 POLYMYXIN B Resistant Bacteria Field Soil Microchip ELECTROPHORESIS Multiple Enzyme restriction fragment length Polymorphism Analysis the Most PROBABLE Number METHOD
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RESTRICTION FRAGMENT LENGTH POLYMORPHISM(RFLP) ANALYSIS OF GENOMIC DNA OF 5 STRAINS OF TRICHINELLA SPIRALIS IN CHINA
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作者 王虹 张月清 +1 位作者 劳为德 吴赵永 《Chinese Medical Sciences Journal》 CAS CSCD 1995年第3期131-135,共5页
Five restriction endonucleases were used to digest genomic DNA from 5 isolates of Trichinella spiralis obtained from Changchun, Tianjin, Xian, Henan and Yunnan. All the isolates were secured from pigs except the Chang... Five restriction endonucleases were used to digest genomic DNA from 5 isolates of Trichinella spiralis obtained from Changchun, Tianjin, Xian, Henan and Yunnan. All the isolates were secured from pigs except the Changchun strain which came from dog. The DNA fragments digested by endonuclease were separated by agarose gel electrophoresis. The Changchun isolate had a EcoRI band at 1. 12kb and a DraI band at 1. 97kb which were unique to this isolate. A cloned specific repetitive DNA sequence (1. 12kb) from the Changchun strain was selected to prepare a probe for the Southern blotting of EcoRI restriction DNA fragments for the 5 isolates. The 1.12kb hybridizing band did not appear except in the Changchun isolate.These results seem to indicate that there are differences between the isolates obtained from hosts in different geographical regions. 展开更多
关键词 TRICHINELLA restriction fragment length polymorphisms Southern blot
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Bacterial Groups Concerned with Maturing Process in Manure Production Analyzed by a Method Based on Restriction Fragment Length Polymorphism Analysis
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作者 Katsuji Watanabe Naoto Horinishi +2 位作者 Kunimasa Matumoto Akihiro Tanaka Kenichi Yakushido 《Advances in Microbiology》 2015年第13期832-841,共10页
Composting is a biological aerobic decomposition process consisted from different phases. Although the Japanese Standards for manure recommended that it took at least 6 months to complete the maturing phase, there was... Composting is a biological aerobic decomposition process consisted from different phases. Although the Japanese Standards for manure recommended that it took at least 6 months to complete the maturing phase, there was no reliable ground. In order to find out shortening method of the maturing phase, the microorganisms concerned with a progress of the maturing was determined by using the most probable number method (MPN) and PCR-RFLP of the 16S rDNA, which was found effective to provide numbers and taxonomy of polymyxin B resistant bacterial groups in the former paper [1]. Compared to the numbers after thermophilic phase, those of Actinobacteria, δ-proteobacteria, and the other gram negative bacteria increased to 50 times, 20 times, and 105 times, respectively, after maturing phase, while those of Bacillus spp., and α and β-proteobacteria decreased to 1/10, and 1/105 after maturing phase. Numbers of the other Fumicutes, and γ-proteobacteria remained in the same revel. Actinobacteria, δ-proteobacteria, and the other gram negative bacteria might be concerned with a progress of the maturing phase, because these bacterial groups were detected and enumerated due to their proliferation ability. Although number of Acitinobacteria might be underestimated because of a PCR bias, the method was found effective for the purpose to monitor bacteria actively proliferated in culture medium. 展开更多
关键词 Maturing Phase MANURE PRODUCTION Microchip ELECTROPHORESIS Multiple Enzyme restriction fragment length Polymorphism Analysis The Most PROBABLE Number METHOD
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Genotyping of human platelet antigen (HPA) system 5 of Chinese Han population in Shanghai by PCR restriction fragment length polymorphism(PCRRFLP)
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《中国输血杂志》 CAS CSCD 2001年第S1期376-,共1页
关键词 PCRRFLP length Genotyping of human platelet antigen system 5 of Chinese Han population in Shanghai by PCR restriction fragment length polymorphism HPA
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Evaluation of the Method Based on Restriction Fragment Length Polymorphism Analysis as Simple Analysis Method of Lactic Acid Bacteria in Foods
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作者 Kunimasa Matsumoto Kouya Shimada +1 位作者 Naoto Horinishi Katsuji Watanabe 《Food and Nutrition Sciences》 2016年第3期163-172,共10页
Lactic acid bacteria have not only been used to produce various kinds of fermented food, but also used as probiotic products. As lactic acid bacterial group was consisted from diverse genera, a simple inspection metho... Lactic acid bacteria have not only been used to produce various kinds of fermented food, but also used as probiotic products. As lactic acid bacterial group was consisted from diverse genera, a simple inspection method by which numbers and contained microorganisms could be automatically analyzed without any preliminary information was required to use them more effectively. In this manuscript, lactic acid bacterial groups in commercial products of kimuchi, komekouji-miso, and yoghurt were identified and enumerated by our newly developed method [1]-[3], to evaluate whether the method could be used as an inspection method of various food samples. In kimuchi, numerically dominant bacteria were Lactobacillus sakei, and L. casei (1.4 × 104 MPN g<sup>-1</sup>) and Leuconostoc spp. (l.4 × 104 MPN). In kouji-miso, numerically dominant bacteria was Bacillus spp. (3 × 103 MPN), which mainly included B. subtilis group and B. cereus group. Lactic acid bacteria such as Lactobacillus spp., or Lactococcus spp., included in the komekouji-miso, could be enumerated after 3 days incubation (1.24 × 104 MPN), but not detected after 7 days incubation. In yoghurt A and C, Lactococcus lactis was detected as numerically dominant lactic acid bacteria (3.0 × 105 MPN). In yoghurt B, Lactobacillus spp., or Lactococcus spp., was detected not only by a culturebased method but also by an unculture-based method, although there was a difference between the both estimated numbers. The present results suggested that the method might become useful as a simple inspection method of food microorganisms, because time and labor of the analysis could be reduced by using an unculture-based method and MCE-202 MultiNA. In this study, Bifidobacteriium spp. was not detected in B and C yoghurt, in spite of indicating their existence, and numbers of lactic acid bacteria were lower than the level of the daily product regulation, because 16S rDNA of Bifidobacteriium spp. might not be amplified by the used PCR condition. The PCR condition must be changed so as to amplify Bifidobacterium spp., before the method will be used as an inspection method for lactic acid bacteria. 展开更多
关键词 Multiple Enzyme restriction fragment length Polymorphism Analysis Most Probable Number Method Lactic Acid Bacteria Komekouji-Miso Kimuchi YOGHURT
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The Use of Restriction Fragment Length Polymorphism and Fluorescence in Situ Hybridization to Investigate Microbiota of Piglets after Feeding Oregano
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作者 Katrin Stelter Andreas Berk +4 位作者 Lutz Geue Stefanie Barth Petra Schlien Alexander Swidsinski Sven Danicke 《Food and Nutrition Sciences》 2014年第17期1628-1636,共9页
A total of 80 piglets (7.9 ± 1.0 kg) were used in a feeding experiment with dried oregano. The diets differed in their oregano content: 0 g, 2 g, 4 g and 8 g oregano/kg feed, corresponding to 0, 23.5, 46.9 and 93... A total of 80 piglets (7.9 ± 1.0 kg) were used in a feeding experiment with dried oregano. The diets differed in their oregano content: 0 g, 2 g, 4 g and 8 g oregano/kg feed, corresponding to 0, 23.5, 46.9 and 93.9 mg carvacrol/kg DM. After the experimental period of 5 weeks, 20 piglets of both extreme feeding groups were slaughtered: 10 animals of the control group and 10 animals of the group that received 8 g oregano/kg. Ingesta samples of jejunum, caecum and colon were collected and analyzed by FISH and PCR RFLP to compare the diversity of microbiota. The results showed no significant changes in microbiota in response to oregano. The patterns of the PCR-RFLP showed a similarity of 61.8% - 91.8% in both feeding groups. In conclusion, an effect of oregano on the in- testinal microbiota could not be shown under the methods used. 展开更多
关键词 PIGLETS Origanum vulgare L. Fluorescence in Situ Hybridization restriction fragment length Polymorphism Intestinal Microorganisms
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TLR4基因多态性与小儿反复呼吸道感染的关系
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作者 赵淑景 马志平 +2 位作者 张金彪 付峰 冯娜娜 《青岛大学学报(医学版)》 CAS 2024年第4期587-590,共4页
目的探究Toll样受体4(TLR4)基因多态性与小儿反复呼吸道感染(RRTI)的关系。方法选择107例RRTI病儿作为观察组,另选103例体检健康儿童作为对照组(近1年未出现RRTI),采用限制性片段长度多态性聚合酶链反应(PCR-RFLP)技术分析两组TLR4基因r... 目的探究Toll样受体4(TLR4)基因多态性与小儿反复呼吸道感染(RRTI)的关系。方法选择107例RRTI病儿作为观察组,另选103例体检健康儿童作为对照组(近1年未出现RRTI),采用限制性片段长度多态性聚合酶链反应(PCR-RFLP)技术分析两组TLR4基因rs2737190位点多态性,比较不同病情严重程度病儿TLR4基因多态性的差异,并分析不同TLR4基因多态性病儿临床特征的差异。结果观察组TLR4基因rs2737190位点AG基因型、G等位基因频率均明显高于对照组,AA基因型频率明显低于对照组(χ^(2)=4.129~8.564,P<0.05);中重度RRTI病儿GG基因型、G等位基因频率明显高于轻度病儿,AA基因型频率显著低于轻度病儿(χ^(2)=9.233~13.357,P<0.05);AA基因型病儿年发作次数、合并呼吸困难比例,以及C反应蛋白、白细胞介素-6、γ-干扰素和丙二醛等指标均显著低于AG和GG基因型病儿,超氧化物歧化酶则显著高于AG和GG基因型病儿(χ^(2)=7.573,F=4.668~24.317,P<0.05)。结论TLR4基因rs2737190位点AG基因型、G等位基因频率会增加小儿RRTI易感性,并促进其炎症反应升高和病情进展。 展开更多
关键词 呼吸道感染 再感染 儿童 TOLL样受体4 多态性 限制性片段长度 病人病情
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牦牛乳蛋白多态性对奶酪凝乳特性的影响
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作者 谈婷 罗毅皓 +1 位作者 孙万成 孙祥祥 《食品与生物技术学报》 CAS CSCD 北大核心 2024年第6期40-49,共10页
为了检测青海部分地区7家不同牧场牦牛乳κ-酪蛋白和αs1-酪蛋白基因多态性,作者分析了基因多态性对奶酪凝乳特性的影响。通过提取牦牛乳体细胞,采用限制性片段长度多态性聚合酶链式反应(polymerase chain reaction-restrition fragment... 为了检测青海部分地区7家不同牧场牦牛乳κ-酪蛋白和αs1-酪蛋白基因多态性,作者分析了基因多态性对奶酪凝乳特性的影响。通过提取牦牛乳体细胞,采用限制性片段长度多态性聚合酶链式反应(polymerase chain reaction-restrition fragment length polymophism,PCR-RFLP)分析技术,对提取的DNA进行PCR扩增及酶切,对电泳条带进行基因分型;提取牦牛乳蛋白,采用高效液相色谱法(high performance liquid chromatography,HPLC)分析各样品与标准品色谱图,对出峰时间和出峰形状进行基因分型。利用流变仪测定不同基因型牦牛乳凝乳过程中流变特性,记录奶酪凝乳时间,计算奶酪得率。牦牛乳κ-酪蛋白基因有AA型、AB型和BB型3种基因型,3种基因型与凝乳特性的分析表明,在凝乳时间方面A等位基因为有利等位基因。牦牛乳αs1-酪蛋白存在AA型、AB型和BB型3种类型,3种基因型与凝乳特性的分析表明,在凝乳时间、奶酪得率、最大动力黏度和最大剪切速率方面B等位基因为有利等位基因。以上结果表明,青海7家牧场牦牛乳κ-酪蛋白和αs1-酪蛋白均存在基因多态性,κ-酪蛋白A等位基因和αs1-酪蛋白B等位基因是影响牦牛乳凝乳特性的主效基因。 展开更多
关键词 牦牛乳 蛋白质多态性 高效液相色谱法 限制性片段长度多态性聚合酶链式反应 凝乳特性
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ACE2 rs2074192位点多态性与非乙醇性脂肪性肝病易感性的相关性
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作者 赵守林 张梅 +2 位作者 赵真真 陈立震 宣世英 《青岛大学学报(医学版)》 CAS 2024年第1期39-42,共4页
目的探讨青岛地区人群血管紧张素转化酶2(ACE2)rs2074192位点多态性与非乙醇性脂肪性肝病(NAFLD)易感性的相关性。方法研究纳入NAFLD病人208例,健康查体者105例。收集受试者的血液标本,提取DNA,应用多聚酶链反应(PCR)检测ACE2基因rs2074... 目的探讨青岛地区人群血管紧张素转化酶2(ACE2)rs2074192位点多态性与非乙醇性脂肪性肝病(NAFLD)易感性的相关性。方法研究纳入NAFLD病人208例,健康查体者105例。收集受试者的血液标本,提取DNA,应用多聚酶链反应(PCR)检测ACE2基因rs2074192位点的基因型,比较ACE2 rs2074192位点基因型及等位基因频率在NAFLD组及对照组的分布差异。同时收集受试者的临床资料及实验室生化检查结果,比较不同基因型病人临床资料及实验室生化结果的差异。结果NAFLD组和对照组ACE2 rs2074192位点的基因型与等位基因分布差异均无统计学意义(P>0.05)。ACE2 rs2074192位点T等位基因女性携带者体质量指数高于未携带者,T等位基因男性携带者血清葡萄糖水平低于未携带者(t=-2.613、-3.195,P<0.05)。结论青岛地区人群ACE2 rs2074192位点多态性与NAFLD易感性无明显相关性。 展开更多
关键词 非酒精性脂肪性肝病 多态性 限制性片段长度 血管紧张素转换酶2 疾病遗传易感性
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PEAR1基因多态性与缺血性脑卒中复发易感性的关系研究
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作者 张云芳 聂晓改 +2 位作者 吉永 王祝君 彭传梅 《国际检验医学杂志》 CAS 2024年第7期776-779,784,共5页
目的分析血小板内皮聚集受体1(PEAR1)基因多态性与缺血性脑卒中复发的相关性,为防治缺血性脑卒中复发提供依据。方法选取该院神经内科门急诊和住院确诊为急性缺血性脑卒中的150例患者作为研究对象,根据是否为脑卒中复发分为初发脑卒中组... 目的分析血小板内皮聚集受体1(PEAR1)基因多态性与缺血性脑卒中复发的相关性,为防治缺血性脑卒中复发提供依据。方法选取该院神经内科门急诊和住院确诊为急性缺血性脑卒中的150例患者作为研究对象,根据是否为脑卒中复发分为初发脑卒中组(127例)和复发脑卒中组(23例)。应用聚合酶链反应-限制性片断长度多态性(PCR-RFLP)方法分析PEAR1基因rs12041331位点单核苷酸多态性,并测序验证基因型。结果初发脑卒中组和复发脑卒中组PEAR1基因rs12041331G>A位点GG、GA、AA基因型和G、A等位基因频率比较,差异有统计学意义(P<0.05);复发脑卒中组的年龄较初发脑卒中组高,差异有统计学意义(P<0.05)。Logistic回归分析显示,年龄、PEAR1基因rs12041331位点AA基因型与缺血性脑卒中复发有关,是缺血性脑卒中复发的危险因素(P<0.05)。结论PEAR1基因rs12041331G>A位点多态性与缺血性脑卒中复发相关。PEAR1基因纯合突变可能是缺血性脑卒中复发的危险因素,PEAR1基因可能是缺血性脑卒中复发风险预测的候选基因。 展开更多
关键词 缺血性脑卒中 单核苷酸多态性 聚合酶链反应-限制性片断长度多态性 等位基因
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Association of TNF-α-238G/A and 308 G/A Gene Polymorphisms with Pulmonary Tuberculosis among Patients with Coal Worker’s Pneumoconiosis 被引量:12
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作者 HONG-MIN FAN ZHUO WANG +7 位作者 FU-MIN FENG KONG-LAI ZHANG JU-XIANG YUAN HONG SUI HONG-YAN QIU LI-HUA LIU XIAO-JUAN DENG JING-XUE REN 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2010年第2期137-145,共9页
Objectives Tumor necrosis factor-α (TNF-α) may play an important role in host's immune response to mycobacterium tuberculosis (M. tuberculosis) infection. This study was to investigate the association of TNF-α... Objectives Tumor necrosis factor-α (TNF-α) may play an important role in host's immune response to mycobacterium tuberculosis (M. tuberculosis) infection. This study was to investigate the association of TNF-α gene polymorphism with pulmonary tuberculosis (TB) among patients with coal worker's pneumoconiosis (CWP). Methods A case-control study was conducted in 113 patients with confirmed CWP complicated with pulmonary TB and 113 non-TB controls with CWP. They were matched in gender, age, job, and stage of pneumoconiosis. All participants were interviewed with questionnaires and their blood specimens were collected for genetic determination with informed consent. The TNF-α gene polymorphism was determined with polymerase chain reaction of restriction fragment length polymorphism (PCR-RFLP). Frequency of genotypes was assessed for Hardy-Weinberg equilibrium by chi-square test or Fisher's exact probability. Factors influencing the association of individual susceptibility with pulmonary TB were evaluated with logistic regression analysis. Gene-environment interaction was evaluated by a multiplieative model with combined OR. All data were analyzed using SAS version 8.2 software. Results No significant difference in frequency of the TNF-α-308 genotype was found between CWP complicated with pulmonary TB and non-TB controls (2,2=5.44, P=-0.07). But difference in frequency of the TNF-α-308 A allele was identified between them (2,2-5.14, P=0.02). No significant difference in frequencies of the TNF-α-238 genotype and allele (P=0.23 and P=0.09, respectively) was found between cases and controls either, with combined (GG and AA) OR of 3.96 (95% confidence interval of 1.30-12.09) at the -308 locus of the TNF-α gene, as compared to combination of the TNF-α-238 GG and TNF-α-308 GG genotypes. Multivariate-adjusted odds ratio of the TNF-α-238 GG and TNF-α-308 GA genotypes was 1.98 (95% CI of 1.06-3.71) for risk for pulmonary TB in patients with CWP. There was a synergic interaction between the TNF-a-308 GG genotype and body mass index (OR=4.92), as well as an interaction between the TNF-α-308 GG genotype and history of BCG immunization or history of TB exposure. And, the interaction of the TNF-α-238 GG genotype and history of BCG immunization or TB exposure with risk for pulmonary TB in them was also indicated. Conclusions TNF-α-308 A allele is associated with an elevated risk for pulmonary TB, whereas TNF-α-238 A allele was otherwise. 展开更多
关键词 Coal worker's pneumoeoniosis (CWP) Pulmonary tuberculosis (TB) Susceptibility POLYMORPHISM Tumor necrosis factor (TNF) α-308 α-238 Polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) Interaction
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POLYMORPHISMS OF THE HUMAN LIPOPROTEIN LIPASE GENE:POSSIBLE ASSOCIATION WITH LIPID LEVELS IN PATIENTS WITH CORONARY HEART DISEASE IN BEIJING AREA 被引量:7
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作者 叶平 裴兰 王士雯 《Chinese Medical Sciences Journal》 CAS CSCD 1996年第3期157-161,共5页
The polymorphisms(Pvu Ⅱand Hind Ⅲ) on the lipoprotein lipase(LPL) gene locus was investigated in a sample of 100 patients surviving previous myocardial infarction and 100 age matched healthy individuals selected fro... The polymorphisms(Pvu Ⅱand Hind Ⅲ) on the lipoprotein lipase(LPL) gene locus was investigated in a sample of 100 patients surviving previous myocardial infarction and 100 age matched healthy individuals selected from Han Chinese of Beijing area.In patient group a strong association was found between H+allele of Hind Ⅲ polymorphism and raised TG levels(P<0.01).In control group P-P-genotype was observed to be associated with higher TG levels compared with P+P genotype of Pvu Ⅱ polymorphism(P<0.05).Combination of H+H+ genotype with P-P-genotype showed the highest TG levels among all nine kinds of genotype combinations in patient group(P<0.01).However,comparison of distribution of alleles and genotypes of these polymorphisms between patient group and control group demonstrated no significant difference. Our data suggest that the polymorphisms at the LPL gene,as the linkage markers with an aetiologic mutation at or around LPL gene,may constitute one of the genetic determinants for the population variation in plasma TG levels,as well as for the common dyslipidemia in Chinese population. 展开更多
关键词 restriction fragment length polymorphism coronary heart disease lipoprotein lipase
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Analysis of polymorphisms in the promoter region of interleukin-1 β by restriction fragment length polymorphism-PCR 被引量:1
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作者 文爱清 王军 +2 位作者 冯凯 朱佩芳 蒋建新 《Chinese Journal of Traumatology》 CAS 2004年第5期271-274,共4页
Objective: To investigate the frequencies of -1470, (-511) and -31 single nucleotide polymorphisms (SNPs) in the promoter of IL-1β and its haplotype constitution in Chongqing population. Methods: One hundred and twel... Objective: To investigate the frequencies of -1470, (-511) and -31 single nucleotide polymorphisms (SNPs) in the promoter of IL-1β and its haplotype constitution in Chongqing population. Methods: One hundred and twelve healthy Chongqing people were enrolled in this study. Polymorphisms at -1470 (G to C), (-511) (T to C) and -31 (C to T) of IL-1β were genotyped with the method of restriction fragment length polymorphism (RFLP). Haplotype frequencies were analyzed by Arlequine software.Results: Frequencies of IL-1β -1470, -511 and -31 SNPs were (41.67)%, 50% and (45.33)%, respectively. Genotype frequencies of -1470 locus were (39.81)%, (37.04)% and (23.15)% for G/G, G/C and C/C respectively. As for T-511C SNP, genotype frequencies of (T/T), T/C and C/C were (29.91)%, (40.18)% and (29.91)%, respectively. Genotyping results of C/C, C/T, and T/T of -31 locus were (35.51)%, (38.32)% and (26.71)% respectively. Haplotype analysis found that there were mainly three haplotypes constituted by three SNPs, ie., G-T-C, C-T-C and G-C-T. Conclusions: Polymorphisms exist in the promoter of IL-1β in Chongqing population. Three SNPs locate in the same haplotype block. 展开更多
关键词 INTERLEUKIN-1 Polymorphism restriction fragment length polymorphisms single nucleotide GENOTYPE Haplotypes
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RESTRICTION ENDONUCLEASE ANALYSIS OF MITOCHONDRIALDNA FROM HUMAN LUNG ADENOCARCINOMA CELLLINE SPC-A-1
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作者 胡义德 钱桂生 +3 位作者 陈维中 李淑平 王关嵩 毛宝龄 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 1999年第4期253-256,共4页
Objective: To understand the role of mitochondrial DNA (mtDNA) in carcinogenesis. Methods: single-step method was used to isolate the mtDNA from human lung adenocarcinoma cell line SPC-A-1. The mtDNA was analyzed by r... Objective: To understand the role of mitochondrial DNA (mtDNA) in carcinogenesis. Methods: single-step method was used to isolate the mtDNA from human lung adenocarcinoma cell line SPC-A-1. The mtDNA was analyzed by restriction fragment length polymorphism (RFLP) with 11 kinds of restriction endonuclease, which were Pvu II, Xho I, Pst I, EcoR I, BstE II, Hind III, Hpa I, Bc1 I, EcoR V, Sca I and Xba I. Restriction map of mtDNA from SPC-A-1 cell was obtained by the single and double-digestion method. Results: It was found that no variation at 32 restriction-sites could be detected in the coding region of mtDNA from SPC-A-1 cell line. But a new site was found at nucleotide 16276 (EcoR V) within the noncoding region. Conclusion: These results indicate that the primary structure of gene coding region of mtDNA isolated from SPC-A-1 cell is highly stable. While the major variation of nucleotide is probably located in the noncoding region. 展开更多
关键词 Lung carcinoma Mitochondrial DNA restriction fragment length polymorphism MUTATION
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PEAR1基因多态性与缺血性脑卒中的相关性研究 被引量:1
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作者 张云芳 庄杉杉 +3 位作者 余艳 李铮 吴晓明 聂晓改 《昆明医科大学学报》 CAS 2023年第11期135-139,共5页
目的分析PEAR1基因多态性与缺血性脑卒中相关性,为缺血性脑卒中发病机制的进一步研究提供科学依据,为疾病防治提供新的思路。方法收集昆明医科大学附属延安医院神经内科门急诊或住院确诊为急性缺血性脑卒中患者150例作为实验组,同期150... 目的分析PEAR1基因多态性与缺血性脑卒中相关性,为缺血性脑卒中发病机制的进一步研究提供科学依据,为疾病防治提供新的思路。方法收集昆明医科大学附属延安医院神经内科门急诊或住院确诊为急性缺血性脑卒中患者150例作为实验组,同期150例健康体检者作为对照组,应用聚合酶链反应-限制性片断长度多态性(PCR-RFLP)方法分析PEAR1基因rs12041331位点单核苷酸多态性(SNP),并测序验证基因型。结果卡方检验显示缺血性脑卒中组和正常对照组PEAR1基因rs12041331G>A位点GG、GA、AA基因型和G、A等位基因频率间的差异有统计学意义(P<0.05);缺血性脑卒中组的糖尿病、高血压比例较正常对照组多,同型半胱氨酸(HCY)水平较正常对照组高,差异有统计学意义(P<0.05);Logistic回归分析显示PEAR1基因rs12041331G>A位点突变可能是缺血性脑卒中发生的危险因素。结论PEAR1基因rs12041331G>A位点基因多态性与缺血性脑卒中发生相关。rs12041331G>A位点基因可作为缺血性脑卒中风险预测的候选基因。 展开更多
关键词 缺血性脑卒中 单核苷酸多态性 聚合酶链反应-限制性片断长度多态性
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鸡金银羽位点基因型PCR-RFLP鉴定方法的建立及其应用研究 被引量:1
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作者 崔梦笛 倪慧勇 +5 位作者 刘华格 褚素乔 王学静 许利军 王志永 樊宝良 《中国家禽》 北大核心 2023年第2期8-14,共7页
为了建立一个快速、简便、有效鉴定鸡金银羽位点基因型的方法,试验通过对金银羽等位基因位点核苷酸序列进行分析,设计合成一对引物,应用该对引物对海兰褐、伊莎褐和大午金凤等采用金银羽羽色自别雌雄的蛋鸡配套系商品代公鸡(金银羽等位... 为了建立一个快速、简便、有效鉴定鸡金银羽位点基因型的方法,试验通过对金银羽等位基因位点核苷酸序列进行分析,设计合成一对引物,应用该对引物对海兰褐、伊莎褐和大午金凤等采用金银羽羽色自别雌雄的蛋鸡配套系商品代公鸡(金银羽等位基因杂合,Ss)和母鸡(金羽等位基因半合子,s-)进行了PCR-RFLP基因型鉴定分析。结果显示,PCR-RFLP方法的鉴定结果与实际基因型一致;采用该方法从960只白羽太行鸡母鸡中鉴定得到3只不携带显性白羽等位基因的银羽母鸡(银羽等位基因半合子,S-);以海兰褐父母代父本公鸡(金羽等位基因纯合,ss)作为父本与用本方法鉴定得到的3只银羽太行鸡母鸡进行杂交,来模拟金银羽自别雌雄的海兰褐蛋鸡商品代鸡的生产,获得的后代雏鸡绒羽颜色表型和性别符合海兰褐商品代鸡金银羽羽色自别雌雄的规律。上述结果表明,建立的PCR-RFLP方法能够快速、简便、有效且低成本地鉴定鸡金银羽位点基因型,为银羽纯合品系的建立提供了一个有效的个体金银羽位点基因型鉴定的方法。 展开更多
关键词 金银羽 基因型 性别鉴定 分子标记 PCR-限制性片段长度的多态性(PCR-RFLP)
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