The response of transcription factor genes to low nitrogen stress was studied to provide molecular basis for improving the absorption and utilization efficiency of nitrogen fertilizer in rice. The agilent rice genome ...The response of transcription factor genes to low nitrogen stress was studied to provide molecular basis for improving the absorption and utilization efficiency of nitrogen fertilizer in rice. The agilent rice genome arrays were used to study the varied expression of transcription factor genes in two rice varieties （SN 196 and Toyonishhiki） with different chlorophyll contents under low nitrogen stress. The results showed that a total of 53 transcription factor genes （35 down-regulated and 18 up-regulated genes at the transcription level） in flag leaves of super-green rice SN196 and 27 transcription factor genes （21 down-regulated and 6 up-regulated genes at the transcription level） in flag leaves of Toyonishiki were affected by low nitrogen stress. Among those nitrogen-responsive genes, 48 transcription factor genes in SN196 and 22 in Toyonishiki were variety-specific. There were overlapped transcription factor genes responded to low nitrogen stress between SN196 and Toyonishiki, with 1 up-regulated and 4 down-regulated at the transcription level. Distributions of low nitrogen responsive genes on chromosomes were different in two rice varieties.展开更多
We isolated 4 Norwalk-like viruses （NLVs） contaminated oysters from 33 Chinese oysters collected from local commercial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase （RdRp） r...We isolated 4 Norwalk-like viruses （NLVs） contaminated oysters from 33 Chinese oysters collected from local commercial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase （RdRp） region of NLVs genomes with RT-PCR, the open reading frame 1 （ORF 1） of the RdRp was sequenced and subjected to multiple-sequence alignment. The results showed that NLVs in the four isolates belong to genogroup Ⅱ. The sequence comparison showed that the similarity between four Chinese oyster isolates were higher than 99.0%, which indicated that NLVs prevalent in close areas have high homogeneity in genome sequences. In addition, the most conserved sequences between diverse NLVs were used to design primers and TaqMan probes, then the real-time quantitative PCR assay was performed. According to the standard curve of GII NLVs, the original amounts （copies） of NLVs in positive patient＇s fecal isolate, positive Japanese oyster isolate, and the Chinese oyster isolate were 8.9× 10^8, 1.25× 10^8 and 4.7× 10^1 respectively. The detecting limit of NLVs was 1 × 10^1 copies. This study will be helpful for routine diagnosis of NLVs pathogens in foods and thus for avoiding food poisoning in the future.展开更多
在樱桃病毒A(CVA)mp基因保守区域设计了3对检测引物,经特异性筛选后,获得可用于病毒定量研究的引物。制备质粒标准品,建立标准曲线,同时验证该方法的灵敏度和特异性,并应用于田间果树样品CVA定量检测。最终成功筛选出1对检测效率高、特...在樱桃病毒A(CVA)mp基因保守区域设计了3对检测引物,经特异性筛选后,获得可用于病毒定量研究的引物。制备质粒标准品,建立标准曲线,同时验证该方法的灵敏度和特异性,并应用于田间果树样品CVA定量检测。最终成功筛选出1对检测效率高、特异性强的引物(CVA-dF2、CVA-dR2),基于SYBR Green I荧光染料建立反转录实时荧光定量PCR检测CVA的方法。该方法重复性好、灵敏度高,无需借助内参基因即可准确检测目的病毒载量,绝对定量标准曲线斜率为-3.5746,决定系数R2为0.9986,扩增效率为0.9044,比常规RT-PCR检测灵敏度高10倍。该方法的建立为CVA定量研究提供了有力工具,可用于果树中CVA批量检测或低丰度病毒样品检测。展开更多
基金supported by the Agricultural Science and Technology Achievement Transformation Fund of Science and Technology Ministry of China(Grant No. 2010GB2B000077)the Special Fund forAgro-scientific Research in the Public Interest of theministry of Agriculture of China (Grant No.201203026)
文摘The response of transcription factor genes to low nitrogen stress was studied to provide molecular basis for improving the absorption and utilization efficiency of nitrogen fertilizer in rice. The agilent rice genome arrays were used to study the varied expression of transcription factor genes in two rice varieties （SN 196 and Toyonishhiki） with different chlorophyll contents under low nitrogen stress. The results showed that a total of 53 transcription factor genes （35 down-regulated and 18 up-regulated genes at the transcription level） in flag leaves of super-green rice SN196 and 27 transcription factor genes （21 down-regulated and 6 up-regulated genes at the transcription level） in flag leaves of Toyonishiki were affected by low nitrogen stress. Among those nitrogen-responsive genes, 48 transcription factor genes in SN196 and 22 in Toyonishiki were variety-specific. There were overlapped transcription factor genes responded to low nitrogen stress between SN196 and Toyonishiki, with 1 up-regulated and 4 down-regulated at the transcription level. Distributions of low nitrogen responsive genes on chromosomes were different in two rice varieties.
文摘We isolated 4 Norwalk-like viruses （NLVs） contaminated oysters from 33 Chinese oysters collected from local commercial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase （RdRp） region of NLVs genomes with RT-PCR, the open reading frame 1 （ORF 1） of the RdRp was sequenced and subjected to multiple-sequence alignment. The results showed that NLVs in the four isolates belong to genogroup Ⅱ. The sequence comparison showed that the similarity between four Chinese oyster isolates were higher than 99.0%, which indicated that NLVs prevalent in close areas have high homogeneity in genome sequences. In addition, the most conserved sequences between diverse NLVs were used to design primers and TaqMan probes, then the real-time quantitative PCR assay was performed. According to the standard curve of GII NLVs, the original amounts （copies） of NLVs in positive patient＇s fecal isolate, positive Japanese oyster isolate, and the Chinese oyster isolate were 8.9× 10^8, 1.25× 10^8 and 4.7× 10^1 respectively. The detecting limit of NLVs was 1 × 10^1 copies. This study will be helpful for routine diagnosis of NLVs pathogens in foods and thus for avoiding food poisoning in the future.
文摘在樱桃病毒A(CVA)mp基因保守区域设计了3对检测引物,经特异性筛选后,获得可用于病毒定量研究的引物。制备质粒标准品,建立标准曲线,同时验证该方法的灵敏度和特异性,并应用于田间果树样品CVA定量检测。最终成功筛选出1对检测效率高、特异性强的引物(CVA-dF2、CVA-dR2),基于SYBR Green I荧光染料建立反转录实时荧光定量PCR检测CVA的方法。该方法重复性好、灵敏度高,无需借助内参基因即可准确检测目的病毒载量,绝对定量标准曲线斜率为-3.5746,决定系数R2为0.9986,扩增效率为0.9044,比常规RT-PCR检测灵敏度高10倍。该方法的建立为CVA定量研究提供了有力工具,可用于果树中CVA批量检测或低丰度病毒样品检测。
