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立克次体的16SrRNA基因序列分析 被引量:20
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作者 温博海 《中国人兽共患病杂志》 CSCD 北大核心 1999年第6期18-20,共3页
目的 研究立克次体的16SrRNA基因序列的差异,为其分类和鉴定提供依据。方法 从基因数据库中选择不同的立克次体属代表种的16SrRNA基因序列,在计算机上用多序列排列程序对序列进行同源位排列和对比分析,以及依据序列... 目的 研究立克次体的16SrRNA基因序列的差异,为其分类和鉴定提供依据。方法 从基因数据库中选择不同的立克次体属代表种的16SrRNA基因序列,在计算机上用多序列排列程序对序列进行同源位排列和对比分析,以及依据序列的相似程度构建进化树。结果 立克次体的16SrRNA基因含有4 个高变区,这些高变区的序列具有种或属的特异性,依据序列的相似程度构成的进化树可将立克次体目内成员分为柯克斯体、巴通体、立克次体、埃立克体等4 个大基因群,每个大基因群含有若干个小基因群。结论 16SrRNA基因高变区的序列可用于设计立克次体种、属特异性PCR引物和杂交探针;16SrRNA 展开更多
关键词 立克次体 16srrna基因 细菌分类 序列分析
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Soil organic carbon and phosphorus availability regulate abundance of culturable phosphate-solubilizing bacteria in paddy fields 被引量:6
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作者 Arvind KUMAR Lal Chand RAI 《Pedosphere》 SCIE CAS CSCD 2020年第3期405-413,共9页
Low availability of phosphorus(P) is a major constraint for optimal crop production, as P is mostly present in its insoluble form in soil. Therefore,phosphate-solubilizing bacteria(PSB) from paddy field soils of the I... Low availability of phosphorus(P) is a major constraint for optimal crop production, as P is mostly present in its insoluble form in soil. Therefore,phosphate-solubilizing bacteria(PSB) from paddy field soils of the Indo-Gangetic Plain, India were isolated, and their abundance was attempted to be correlated with the physicochemical characteristics of the soils. Ninety-four PSB were isolated on Pikovskaya’s agar medium, and quantitative phosphate solubilization was evaluated using NBRIP medium. The isolates solubilized P up to a concentration of 1 006 μg mL-1 from tricalcium phosphate with the secretion of organic acids. These isolates were identified by 16 S rRNA gene sequence comparison, and they belonged to Gammaproteobacteria(56 isolates),Firmicutes(28 isolates), Actinobacteria(8 isolates), and Alphaproteobacteria(2 isolates). Phylogenetic analysis confirmed the identification by clustering the isolates in the clade of the respective reference organisms. The correlation analysis between PSB abundance and physicochemical characteristics revealed that the PSB population increased with increasing levels of soil organic carbon, insoluble P, K+, and Mg2+. The promising PSB explored in this study can be further evaluated for their biofertilizer potential in the field and for their use as potent bio-inoculants. 展开更多
关键词 bacterial abundance insoluble P organic acids phosphate solubilization phylogenetic analysis 16s rrna gene
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