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大黄鱼slitrk3基因启动子克隆及转录调控分析
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作者 周锐涛 岳珠峰 +4 位作者 纪焦军 温靖 姜丹 王志勇 方铭 《南方水产科学》 CAS CSCD 北大核心 2023年第4期68-76,共9页
神经突触相关蛋白Slitrk3具有调节抑制性突触发育的作用。研究大黄鱼(Larimichthys crocea)神经突触黏附分子slitrk3基因的转录调控机制,可为解决大黄鱼养殖面临的生长、应激及抗逆等问题提供新思路。通过生物信息学方法对大黄鱼及其他... 神经突触相关蛋白Slitrk3具有调节抑制性突触发育的作用。研究大黄鱼(Larimichthys crocea)神经突触黏附分子slitrk3基因的转录调控机制,可为解决大黄鱼养殖面临的生长、应激及抗逆等问题提供新思路。通过生物信息学方法对大黄鱼及其他物种的Slitrk3氨基酸进行多重序列比对和系统进化树分析,并预测大黄鱼slitrk3基因启动子区域相关的调控元件,采用双荧光素酶报告基因系统检测大黄鱼slitrk3基因启动子区域的转录活性。生物信息学分析结果显示,Slitrk3氨基酸序列在鱼类中具有较高的保守性;大黄鱼slitrk3基因启动子区域预测存在2个潜在的转录起始位点、2个CpG岛以及Sp1、GR、C/EBPα和C/EBPβ等多种转录因子结合位点。双荧光素酶报告基因系统结果显示,大黄鱼slitrk3基因启动子区域的−1970—−1614 bp、−1210—−667 bp存在正调控元件,−1614—−1210 bp、−667—−376 bp、−376—−147 bp存在负调控元件,推测−147—+16 bp为核心启动子。 展开更多
关键词 大黄鱼 slitrk3基因 启动子 转录调控
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SLITRK3 expression correlation to gastrointestinal stromal tumor risk rating and prognosis 被引量:2
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作者 Chao-Jie Wang Zi-Zhen Zhang +8 位作者 Jia Xu Ming Wang Wen-Yi Zhao Lin Tu Chun Zhuang Qiang Liu Yan-Yin Shen Hui Cao Zhi-Gang Zhang 《World Journal of Gastroenterology》 SCIE CAS 2015年第27期8398-8407,共10页
AIM: To assess the influence of SLIT and NTRKlike family member 3(SLITRK3) on the prognosis of gastrointestinal stromal tumor(GIST) and determine whether SLITRK3 can help improve current risk stratification systems.ME... AIM: To assess the influence of SLIT and NTRKlike family member 3(SLITRK3) on the prognosis of gastrointestinal stromal tumor(GIST) and determine whether SLITRK3 can help improve current risk stratification systems.METHODS: We hypothesized that SLITRK3 could be used as a prognostic molecular biomarker for GIST. 35 fresh tumor samples and 417 paraffin-embedded specimens from GIST patients were utilized. SLITRK3m RNA expression in GIST tumor tissue was detected by real-time polymerase chain reaction, and SLITRK3 protein levels were estimated by immunohistochemistry. The correlation of SLITRK3 expression with various tumor clinicopathological characteristics and follow-up data were analyzed.RESULTS: GIST tumors had high expression of SLITRK3 compared with adjacent normal tissues and the expression level gradually increased with risk grade. SLITRK3 protein expression was closely associated with gastrointestinal bleeding, tumor site, tumor size, mitotic index, and National Institutes of Health(NIH) classification. Survival analysis showed that SLITRK3 expression was closely correlated with overall survival and disease-free survival of GIST patients. Multivariate analysis also identified SLITRK3 expression, mitotic index, and NIH stage as significant risk factors of GIST recurrence.CONCLUSION: SLITRK3 expression is a highly significant predictor of GIST recurrence and metastasis. Combinations of SLITRK3 and NIH stage have strong predictive and prognostic value, and are feasible markers for clinical practice in gastrointestinal stromal tumor. 展开更多
关键词 slitrk3 GASTROINTESTINAL STROMAL tumor Biomarkers Non-epithelial TUMORS Risk STRATIFICATION
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