Background Streptococcus pneumoniae (S.pneumoniae) is a major causative agent of severe infections,including sepsis,pneumonia,meningitis,and otitis media,and has become a major public health concern.We report the pn...Background Streptococcus pneumoniae (S.pneumoniae) is a major causative agent of severe infections,including sepsis,pneumonia,meningitis,and otitis media,and has become a major public health concern.We report the pneumococcal serotype and sequence type (ST) distribution,and antimicrobial resistance of 39 S.pneumoniae strains from seven hospitals in China.Methods Blood/cerebrospinal fluid (CSF) and sputum isolates from patients were analyzed to determine S.pneumoniae serotypes by polymerase chain reaction (PCR) and the Neufeld Quellung reaction,the multilocus sequence types (MLST) by PCR and sequencing,and susceptibility to antimicrobial agents by the VITEK Gram Positive Susceptibility Card.Results A total of 39 isolates were collected including 21 blood/CSF and 18 sputum isolates.Conventional serotyping by the Quellung reaction required 749 reactions.In contrast,PCR based typing needed only 106 PCR reactions.The most frequent serotypes from the blood/CSF isolates were 14 (38.1%),19A (14.3%),23F (9.5%),and 18C (9.5%).In the sputum isolates the most frequent serotypes were 19F (33.3%),23F (16.7%),19A (11.1%),and 3 (11.1%).The incidence of penicillin resistance in the blood/CSF and sputum isolates was 66.7% and 55.6%,respectively.Statistical analysis showed that patients ≤5 years old had a higher resistance to penicillin when they compared with the patients ≥65 years old (P=0.011).Serotypes 14,19A and 19F were significantly associated with penicillin resistance (P 〈0.001).ST320,ST271,and ST876 isolates showed high resistant rates to several antibiotics including penicillin (P=0.006).All of the isolates of serotype 19A were resistant to both penicillin and erythromycin,and they were all multi-drug resistant (MDR) isolates.Conclusions The specificity and sensitivity of multiplexPCR are good,and this method represents a substantial savings of time and money,and can be widely used in the laboratory and clinical practice.Data from this research showed an extremely high prevalence of penicillin resistance and an increasing prevalence of multi-drug resistant (MDR) rate in S.pneumoniae.A distinctive emergence of serotype 19A was observed which was also associated with the increasing prevalence of antimicrobial resistance.Therefore,nationwide surveillance of pneumococcal resistance and serotypes is strongly warranted.展开更多
Background According to data from the China Hospital Invasive Fungal Surveillance Net (CHIF-NET) 2010, Candida tropica/is (C. tropica/is) is the third most common pathogen causing invasive candidiasis. Moreover, t...Background According to data from the China Hospital Invasive Fungal Surveillance Net (CHIF-NET) 2010, Candida tropica/is (C. tropica/is) is the third most common pathogen causing invasive candidiasis. Moreover, the majority of fluconazole-resistant C. tropicalis isolates were from a single hospital. Therefore, a molecular epidemiological survey is necessary to investigate the genetic relatedness of C. tropica/is isolates in China. Methods In this study, 48 C. tropicalis isolates causing invasive fungal infections from four tertiary hospitals in China were studied. All the isolates were identified by sequencing the internal transcribed spacer region. Antifungal susceptibility to triazoles, amphotericin B, and caspofungin was determined by the Clinical and Laboratory Standards Institute standard broth microdilution method. Multilocus sequence typing (MLST) was performed, and phylogenetic analysis was further performed by the eBURST and maximum parsimony (MP) methods to characterize the genetic relatedness of isolates. Results MLST discriminated 40 diploid sequence types (DSTs) among 48 isolates, including 36 novel DSTs, and the XYR1 gene showed the highest discriminatory power. The DSTs obtained from this study were compared with those of previously reported C. tropicalis isolates, and there was poor type alignment with regional strains. Nine groups and 11 singletons were identified by eBURST, whereas two groups and 10 subgroups were clustered by MP analysis. Generally, there were no obvious correlations between clonal clusters generated and the specimen source or hospital origin. Seven fiuconazole-resistant isolates were confirmed and assigned to three distinguishable branches. Conclusions The results suggested diverse origins of invasive C. tropicalis isolates in China. Although most invasive C. tropicalis strains in the mainland of China were clustered with previously characterized Asian isolates, major C. tropicalis clusters identified in this study were genetically distinct from those of other geographic regions.展开更多
Background Multi-locus sequence typing (MLST) is widely used to explore the population structure of numerous bacterial pathogens. However, for genotypically-restricted pathogens, the sensitivity of MLST is limited b...Background Multi-locus sequence typing (MLST) is widely used to explore the population structure of numerous bacterial pathogens. However, for genotypically-restricted pathogens, the sensitivity of MLST is limited by a paucity of variation within selected loci. For Bartonella henselae (B. henselae), although the MLST scheme currently used has been proven useful in defining the overall population structure of the species, its reliability for the accurate delineation of closely-related sequence types, between which allelic variation is usually limited to, at most, one or two nucleotide polymorphisms. Exploitation of high-throughput sequencing data allows a more informed selection of MLST loci and thus, potentially, a means of enhancing the sensitivity of the schemes they comprise. Methods We carried out SOLID resequencing on 12 representative B. henselae isolates and explored these data using single nucleotide polymorphism (SNP) analysis. We determined the number and distribution of SNPs in the genes targeted by the established MLST scheme and modified the position of loci within these genes to capture as much genetic variation as possible. Results Using genome-wide SNP data, we found the distribution of SNPs within each open reading frame (ORF) of MLST loci, which were not represented by the established B. henselae MLST scheme. We then modified the position of loci in the MLST scheme to better reflect the polymorphism in the ORF as a whole. The use of amended loci in this scheme allowed previously indistinguishable ST1 strains to be differentiated. However, the diversity of B. henselae was still rare in China. Conclusions Our study demonstrates the use of SNP analysis to facilitate the selection of MLST loci to augment the currently-described scheme for B. henselae. And the diversity among B. henselae strains in China is markedly less than that observed in B. henselae populations elsewhere in the world.展开更多
The Gram-negative bacterial genus Brucella includes six classic species based on host specificity,pathogenicity and phenotypic differences.Four more Brucella species were identified in 2007.Although many Brucella geno...The Gram-negative bacterial genus Brucella includes six classic species based on host specificity,pathogenicity and phenotypic differences.Four more Brucella species were identified in 2007.Although many Brucella genomes have been sequenced,genome sequences and analysis of Brucella strains isolated in China are still scarce.An efficient genome-based Brucella typing method is also needed.In this study,we used the minimum core genome(MCG)typing method to identify and type Brucella strains.Twenty Brucella isolates fromChinawere newly sequenced.The genome sequences of 55 representative Brucella strainswere downloaded.Among the 75 genomes,1089 genes and 52,030 single nucleotide polymorphisms(SNPs)shared by all isolates were considered as the MCG genes and MCG SNPs.Using these 52,030 MCG SNPs,Brucella was divided into six MCG groups.In addition,average nucleotide identity(ANI)values and the distributions of 184 virulence genes were all computed.The proportions of virulence genes were 90.96%,93.56%,95.89%,86.04%,85.78%and 91.87%for MCG groups 1 to 6,respectively.The intragroup ANI values were higher than the intergroup values,further confirming the validity of the MCG taxonomy classification.Brucella melitensis and Brucella abortus,the two main Brucella species pathogenic to humans,were well separated from other species.With the development and cost reduction of next-generation sequencing,theMCG typing method can be used for rapid identification of Brucella,which can contribute to the rapid diagnosis of brucellosis and ensure timely and effective treatment.展开更多
Salmonella is a significant foodborne zoonotic pathogen that endangers both human and animal health.The goal of this research is to gain a preliminary understanding of Salmonella contamination and antimicrobial resist...Salmonella is a significant foodborne zoonotic pathogen that endangers both human and animal health.The goal of this research is to gain a preliminary understanding of Salmonella contamination and antimicrobial resistance in the chicken production chain in Hubei Province,China.1149 animal and environmental samples were collected from chicken farms,slaughterhouses,and retail markets in six cities across Hubei Province in China from 2019 to 2020,yielding Salmonella isolation rates of 4.68%(28/598),12.21%(47/385),and 9.64%(16/166),respectively.Seventeen distinct serotypes were detected among 53 non-clonal Salmonella strains,of which Meleagridis(26.42%,14/53)was the dominant serotype.Almost half of the strains(49.06%,26/53)were multi-drug resistant(MDR).Whole-genome sequencing(WGS)showed that 10 resistance genes(tetA,bla_(TEM),parC,qnrs1,floR,aac(6'-ly,aph(6)-ld,aph(3")-b,aac(6')-laa and sul2)and 7 categories of virulence genes were present in all three links in 22 non-clonal dominant serotype strains.It was shown that Salmonella in the chicken production chain in Hubei Province had a high resist-ance rate to Tetracycline(TET,73.58%),Ofloxacin(OFL,69.81%),Florfenicol(FFC,60.38%)and Ampicillin(AMP,39.62%)which was consistent with the widespread use of these drugs in the husbandry industry in China.Salmonella ST types determined by MLST and serotypes determined by WGS had a one-to-one correlation.Minimum spanning tree analysis revealed that there was cross contamination of Salmonella in farms and slaughterhouses,slaughterhouses and markets,animal samples and environmental samples.This work provides useful information for the prevention and control of contamination and antimicrobial resistance of Salmonella in the chicken production chain,as well as demonstrating the dependable role of WGS in Salmonella molecular typing.展开更多
Based on 294 earthquake sequences with magnitude greater than or equal to 5.0 occurred in Chinese mainland since 1970, the spatial distribution features of sequence types have been studied. In southwestern China, it t...Based on 294 earthquake sequences with magnitude greater than or equal to 5.0 occurred in Chinese mainland since 1970, the spatial distribution features of sequence types have been studied. In southwestern China, it takes mainshock-aftershock sequence type (MAT) as the major in Chuan-Dian rhombic block and concerned Xianshuihe-Anninghe-Xiaojiang seismic belt, as well as in Jinshajiang-Honghe seismic belt. Multiple mainshock type (MMT) mainly distributes in western Yunnan, and Longlin and Lancang areas in Tengchong-Baoshan block in west of Nujiang-Lancangjiang fault zone. A few isolated earthquake type (IET) mainly occurred in northwestern Sichuan and there is no IET occurred in Yunnan region. In northwestern China, it takes mainshock-aftershock sequence type (MAT) as the major in west segment of South Tianshan in Xinjiang region. Some MMT also occurred in this area in the intersection of Kalpin block and the Puchang fault zone. It takes IET as the major in middle Tianshan in Xinjiang. Along the Qilianshan seismic belt, most of sequences are MAT. In Qinghai region, it takes MAT as the major, but the regional feature of the spatial distribution of sequence types is not very clear. In North China, it takes MAT as the major in Yinshan-Yanshan-Bohai seismic belt, north edge of North China, and in Hebei plain seismic belt, as well as in sub-plate of lower river area of Yangtze River. In intersection of north segment of Shanxi seismic belt and the NW-trending Yinshan-Yanshan-Bohai seismic belt, there are several moderate or strong MMT with magnitude from 5.0 to 6.0 occurred. In south of North China around the latitude line of 35°N, it takes IET as the major. The spatial distribution of sequence types is relevant to the patterns of tectonic movements. MAT is mostly produced by the ruptures of locked units or asperities or the neonatal separating segments inside the fault zones. MMT is generally relevant to the conjugate structures or intersection of many tectonic settings. Further extension of simple fault often produces IET. Spatial distribution of sequence types is also correlative to the regional and deep environment of crustal medium to some extent. MAT mainly distributes in high velocity area in upper crust or in the transition zone between high velocity area and low velocity area, MMT mostly occurred in the low velocity area in upper crust.展开更多
In this paper, we investigate the problem of approximating solutions of the equations of Lipschitzian ψ-strongly accretive operators and fixed points of Lipschitzian ψ-hemicontractive operators by lshikawa type iter...In this paper, we investigate the problem of approximating solutions of the equations of Lipschitzian ψ-strongly accretive operators and fixed points of Lipschitzian ψ-hemicontractive operators by lshikawa type iterative sequences with errors. Our results unify, improve and extend the results obtained previously by several authors including Li and Liu (Acta Math. Sinica 41 (4)(1998), 845-850), and Osilike (Nonlinear Anal. TMA, 36(1)(1999), 1-9), and also answer completely the open problems mentioned by Chidume (J. Math. Anal. Appl. 151 (2)(1990), 453-461).展开更多
The aftershock activity of the May 12, 2008 Wenchuan Ms8.0 Earthquake Sequence shows an obvious segmented feature. Most of the large aftershocks were distributed in the north and south parts of the aftershock zone. Th...The aftershock activity of the May 12, 2008 Wenchuan Ms8.0 Earthquake Sequence shows an obvious segmented feature. Most of the large aftershocks were distributed in the north and south parts of the aftershock zone. Thrusting was dominant with a small amount of strike-slip component in the south part. The aftershock activity decayed gradually, presenting the sequence features of a mainshock-aftershock pattern. The north part was the ending area of the malnshock fracture where strike-slipping was dominant, showing an obvious swarm feature. Therefore it became the major area for large aftershocks. The modulation of the earth tide on aftershock activity is remarkable; most large aftershocks occur during the period of flood and neap tide. The time period around 16:00 was the dominant occurring time for large aftershocks. The p-value, a parameter of modified Omori formula, increases gradually with time, and reaches about 1 at the end. Based on previous study, the sequence patterns, magnitude of maximum aftershock, as well as the duration of aftershock activity has been discussed. The primary results also show that the magnitude difference between the maiushock and the maximum aftershock is proportional to the rupture size of the maiushock for huge earthquakes of about Ms8.0. This means that when the magnitudes of the earthquakes are nearly the same, large rupture size corresponds to sufficient energy release.展开更多
In this paper, we take occurrence process of early strong aftershocks of a main after shock type′s earthquake sequence as a complex grey system, and introduce predicting method for its stronger aftershocks by grey p...In this paper, we take occurrence process of early strong aftershocks of a main after shock type′s earthquake sequence as a complex grey system, and introduce predicting method for its stronger aftershocks by grey predicting theory. Through inspection prediction for 1998 Zhangbei M S=6.2 earthquake sequence, it shows that the grey predicting method maybe has active significance for the investigation of quick response prediction problems of stronger aftershocks of an earthquake sequence.展开更多
Currently, Portuguese teaching prioritizes the study of text sequence types and genres. All the didactic material and activity in the classroom are guided by this study. Because the narrative text type is one of the f...Currently, Portuguese teaching prioritizes the study of text sequence types and genres. All the didactic material and activity in the classroom are guided by this study. Because the narrative text type is one of the first which the student has contact with, it will be the focus of this work. This article aims to present a didactic sequence along the lines of Dolz, Noverraz, and Schneuwly (2004), using the fable and tale genres in order to contribute to the development and appropriation, by the students, of the structural and linguistic characteristics of these genres and the type that makes it up. This sequence of activities is fundamental to work with text production, as it greatly contributes to the writing teaching.展开更多
In this study the authors compared the sequence types (STs) designed by sequence based typing (SBT) of 4 clinical and 12 environmental strains of Legionella pneumophila serogroup 1 (LP1) which were isolated from...In this study the authors compared the sequence types (STs) designed by sequence based typing (SBT) of 4 clinical and 12 environmental strains of Legionella pneumophila serogroup 1 (LP1) which were isolated from hospital facilities for the mentally disabled. The strains were selected after a retrospective surveillance of 565 clinical records (2002-2009) and investigations of water circuit. It was possible to correlate two clinical strains with the corresponding environment, which were collected from showers that had exposed the patients (ST685, ST16) and two clinical strains present in the same structure (STI). The other environmental strains were isolated from water in the department with confirmed or suspected clinical cases. All the strains (seven) from the first structure had ST188; two from the second structure had ST34; and the last from the third structure, gave an ST694. The results were compared with the European Working Group for Legionella Infections (EWGLI) database: the ST 1, 16, 34 and 188 were already known in literature, among clinical and nosocomial cases, especially for ST 1, the most distributed worldwide. Two STs were new to the database. ST685 was isolated both from a patient and from the water; ST694, which was found exclusively in the environmental compartment of a control structure (no cases of legionellosis and low number of nosocomial pneumonia), was unknown in the literature and the authors could only speculate on its possible minor virulence and/or distribution. The implementation of SBT and international comparisons may be useful to gain genotypic knowledge of circulating environmental strains, also verifying their presence in the clinical setting.展开更多
Through the scientific investigation on Lushan for a long time, detailed studies have been carried out on the geologic stratum section of Late Quaternary in Dajiaochang. The series age data of complete stratigraphic s...Through the scientific investigation on Lushan for a long time, detailed studies have been carried out on the geologic stratum section of Late Quaternary in Dajiaochang. The series age data of complete stratigraphic section and full time formation since 400 kaBP were based on the results of the analyses using the dating methods with various instruments such as the ancient geomagnetism, electronics spin resonance (ESR), 36C1 and lumines- cence dating, etc. Corresponding to these data, it identified the paleomagnetic polarity events including Biwa- III event (320 kaBP), Biwa- 1I event (260 kaBP), Biwa- I event (180 kaBP, scarcity due to the disturbance of the iron dish), Blake event (100 kaBP) and Laschamp event (20 kaBP, didn't grow due to the activities of the surface), etc. Combined with the sequence stratigraphy, layer type characteristics and its sediment environment, the strati- graphic can be divided into 4 stages of development respectively : Stage [ is the climate period of glacial epoch (200-400 kaBP); stage 11 is the climate period of interglacial epoch (100-200 kaBP); stage llI is the climate peri- od of periglacial epoch (10-100 kaBP); stage IV is the climate period ofpostglacial epoch (0-10 kaBP).展开更多
Objective To characterize the meningococcal strains isolated from cases and close contacts with meningococcal disease associated with an outbreak in a jail in May 2010 by investigating the national distribution of hyp...Objective To characterize the meningococcal strains isolated from cases and close contacts with meningococcal disease associated with an outbreak in a jail in May 2010 by investigating the national distribution of hyperinvasive ST-4821 serogroup C clone associated with this outbreak. Methods The cases were described based on the clinical symptoms and laboratory results. Pharyngeal swabs were cultured for N. meningitidis from men in the jail. Meningococcal isolates were identified by serogrouping, pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST), respectively. Four hundred and sixteen serogroup C N. meningitidis strains were collected from 27 provinces between 2003 and 2010 for a nationwide survey and analyzed by PFGE and MLST. Results Three persons in a jail system were infected with invasive N. meningitidis serogroup C. All isolates tested had matching PFGE patterns and belonged to the multilocus sequence type (ST) 4821 clonal complex. All 47 N. meningitidis strains were identified from the pharyngeal swabs of 166 peoples in the jail, and 26 of them belonged to ST-4821 serogroup C clone, and 90.14% (375/416) serogroup C strains identified in the nationwide survey belonged to the ST-4821 complex. The ST-4821 serogroup C clone was spread nationwide, distributed in 24 provinces, especially in eastern provinces between 2003 and 2010. Conclusion Endemic transmission and carriage rate of ST-4821 serogroup C clone are high in this jail system. The ST-4821 serogroup C clone is spreading in China and nationwide distributed despite the existence of some effective vaccines.展开更多
Objective This study aimed to evaluate the genetic diversity,virulence,and antimicrobial resistance of Aeromonas isolates from clinical patients,tap water systems,and food.Methods Ninety Aeromonas isolates were obtain...Objective This study aimed to evaluate the genetic diversity,virulence,and antimicrobial resistance of Aeromonas isolates from clinical patients,tap water systems,and food.Methods Ninety Aeromonas isolates were obtained from Ma’anshan,Anhui province,China,and subjected to multi-locus sequence typing(MLST)with six housekeeping genes.Their taxonomy was investigated using concatenated gyr B-cpn60 sequences,while their resistance to 12 antibiotics was evaluated.Ten putative virulence factors and several resistance genes were identified by PCR and sequencing.Results The 90 Aeromonas isolates were divided into 84 sequence types,80 of which were novel,indicating high genetic diversity.The Aeromonas isolates were classified into eight different species.PCR assays identified virulence genes in the isolates,with the enterotoxin and hemolysin genes act,aer A,alt,and ast found in 47(52.2%),13(14.4%),22(24.4%),and 12(13.3%)of the isolates,respectively.The majority of the isolates(≥90%)were susceptible to aztreonam,imipenem,cefepime,chloramphenicol,gentamicin,tetracycline,and ciprofloxacin.However,several resistance genes were detected in the isolates,as well as a new mcr-3 variant.Conclusions Sequence type,virulence properties,and antibiotic resistance vary in Aeromonas isolates from clinical patients,tap water systems,and food.展开更多
Objective To investigate genetic and antibiotic resistance characteristics of Campylobacter jejuni(C. jejuni) isolated from Shenzhen. Methods Multilocs sequence typing and agar dilution methods were used to define the...Objective To investigate genetic and antibiotic resistance characteristics of Campylobacter jejuni(C. jejuni) isolated from Shenzhen. Methods Multilocs sequence typing and agar dilution methods were used to define the genotype and antibiotic resistance of C. jejuni, respectively. Results In total, 126 C. jejuni strains were isolated. The prevalence of C. jejuni was 5.3% in diarrheal patients. The prevalence in poultry meat(36.5%) was higher than that in cattle meat(1.1%). However, the prevalence in poultry cloacal swabs(27.0%) was lower than that in cattle stool(57.3%). Sixty-two sequence types were obtained, among which 27 of the STs and 10 alleles were previously unreported. The most frequently observed clonal complexes were ST-21(11.9%), ST-22(10.3%), and ST-403(7.1%). ST-21, ST-45, ST-354, ST-403, and ST-443 complexes overlapped between isolates from patients and cattle, whereas ST-45 and ST-574 complexes overlapped between isolates from patients and poultry. All C. jejuni were resistant to at least one antibiotic. The highest resistance rate was toward ciprofloxacin(89.7%), followed by tetracycline(74.6%), and nalidixic acid(69.0%). Conclusion This is the first report of the genotypes and antibiotic resistance of C. jejuni in Shenzhen. Overlapping clonal complexes were found between isolates from patients and cattle, and between patients and poultry.展开更多
An alcohol dehydrogenase (ADH)-coexisted solidstate electrochemiluminescence (ECL) biosensor for sensitive detection of the p53 gene was developed. The electrode modified by multiwalled carbon nanotubes, Ru(bpy...An alcohol dehydrogenase (ADH)-coexisted solidstate electrochemiluminescence (ECL) biosensor for sensitive detection of the p53 gene was developed. The electrode modified by multiwalled carbon nanotubes, Ru(bpy)]2+3 and polypyrrole ( MWNTs-Ru (bpy) ]2+3 -PPy ) was prepared to adsorb the ssDNA by electrostatic interactions. Then, the ssDNA recognized the gold nanoparticles (AuNPs)-labeled p53 gene and produced the AuNPs-dsDNA electrode with the AuNPs layer. The AuNPs layer adsorbed the ADH molecules for producing the ECL signal. Thus, the biosensor was based on coupling enzyme substrate reaction with solid-state ECL detection, and it displayed good sensitivity and specificity. The detection limit of the wild type p53 sequence (wtp53) is as low as 0. 1 pmol/L and the discrimination is up to 57. 1% between the wtp53 and the muted type p53 sequence (mtp53). The amenability of this method to the analyses of p53 from normal and cancer cell lysates is demonstrated. The signal of wtp53 in the MGC-803 gastric cancer cell lysates turns out to be about 61.8% that of the wtp53 in the GES-1 normal gastric mucosal cell lysates, and the concentration of the wtp53 is found to decrease about 59 times. The method is highly complementary to enzyme-linked immunosorbent assay (ELISA), and it holds promise for the diagnosis and management of cancer.展开更多
and pili genes are also investigated.Methods:This multicentre,prospective,observational study is conducted in seven major tertiary hospitals in Malaysia among non-pregnant adults.Simultaneously,a retrospective study i...and pili genes are also investigated.Methods:This multicentre,prospective,observational study is conducted in seven major tertiary hospitals in Malaysia among non-pregnant adults.Simultaneously,a retrospective study is conducted in the selected hospitals with similar approaches.GBS isolates are subjected to phenotyping,serotyping by multiplex PCR,antimicrobial susceptibility testing and PCR-detection of GBS virulence and pilus genes.Seven housekeeping genes are amplified and sequenced for multi-locus sequence typing.Discussion:Findings from the study may contribute to the management of clinical practice to diagnose and prevent GBS related diseases in a timely manner.Prudent use of antibiotics is encouraged by monitoring antimicrobial resistance.展开更多
Bacillus coagulans can help ameliorate or prevent gastrointestinal diseases, but the genetic relationships among B. coagulans isolates are not well studied. Multilocus sequence typing analysis was conducted on 57 isol...Bacillus coagulans can help ameliorate or prevent gastrointestinal diseases, but the genetic relationships among B. coagulans isolates are not well studied. Multilocus sequence typing analysis was conducted on 57 isolates of B. coagulans from 22 provinces or autonomous regions in China. B. coagulans isolates were highly diverse and a total of 33(sequence typings) STs were found. These isolates had a weak clonal population structure and strong indications of intraspecies recombination. The evolution direction of B. coagulans was not correlated with geography or isolation source. Fifteen strains were selected for further analysis based on proximity relationships from the phylogenetic tree. Five isolates(B. coagulans-1, B. coagulans-10, B. coagulans-39, B. coagulans-70 and B. coagulans-71) with good spore-forming ability relative to the rest of the isolates were evaluated for constipation relief. B. coagulans-39 significantly relieved constipation symptoms in mice by regulating intestinal flora, increasing the production of short-chain fatty acids and restoring the level of gastrointestinal regulatory peptides. Comparative genomic analysis showed the beneficial effects of B. coagulans-39 might be associated with specific functional genes that are involved in the utilization of various carbohydrates as primary substrates and short-chain fatty acid production.展开更多
Beef is a source of human Campylobacter infections.Antimicrobial treatment is needed when patients are immuno‑compromised or have other comorbidities.Therefore,we investigated the prevalence and antimicrobial resistan...Beef is a source of human Campylobacter infections.Antimicrobial treatment is needed when patients are immuno‑compromised or have other comorbidities.Therefore,we investigated the prevalence and antimicrobial resistance of Campylobacter spp.in beef cattle in Japan.Rectal swab samples were collected from 164 beef cattle at an abattoir between March 2021 and August 2021,and Campylobacter spp.were isolated from 94(57.3%)cattle.C.jejuni and C.coli were isolated from 68 and 26 cattle,respectively.For Campylobacter jejuni,the resistant rates against ampicillin,tetracycline and ciprofoxacin were 20.6,75.0 and 64.7%,respectively.For C.coli,the resistant rates against ampicil‑lin,tetracycline and ciprofoxacin were 53.8,76.9 and 88.5%,respectively.No Campylobacter isolates were resistant to erythromycin.By multilocus sequence typing,C.jejuni and C.coli isolates were classifed into 22 and 2 sequence types(STs).The top three STs of C.jejuni were ST806(12 isolates),ST21(nine isolates),and ST459(eight isolates).The most frequent ST of C.coli was ST1068(23 isolates).The results suggest that Campylobacter spp.are prevalent in the gastrointestinal tract of beef cattle slaughtered at abattoirs.Furthermore,the administration of erythromycin is efec‑tive against human campylobacteriosis caused by beef consumption.Monitoring the prevalence and antimicrobial resistance of Campylobacter spp.in beef cattle could be useful for managing the risk of human campylobacteriosis.展开更多
文摘Background Streptococcus pneumoniae (S.pneumoniae) is a major causative agent of severe infections,including sepsis,pneumonia,meningitis,and otitis media,and has become a major public health concern.We report the pneumococcal serotype and sequence type (ST) distribution,and antimicrobial resistance of 39 S.pneumoniae strains from seven hospitals in China.Methods Blood/cerebrospinal fluid (CSF) and sputum isolates from patients were analyzed to determine S.pneumoniae serotypes by polymerase chain reaction (PCR) and the Neufeld Quellung reaction,the multilocus sequence types (MLST) by PCR and sequencing,and susceptibility to antimicrobial agents by the VITEK Gram Positive Susceptibility Card.Results A total of 39 isolates were collected including 21 blood/CSF and 18 sputum isolates.Conventional serotyping by the Quellung reaction required 749 reactions.In contrast,PCR based typing needed only 106 PCR reactions.The most frequent serotypes from the blood/CSF isolates were 14 (38.1%),19A (14.3%),23F (9.5%),and 18C (9.5%).In the sputum isolates the most frequent serotypes were 19F (33.3%),23F (16.7%),19A (11.1%),and 3 (11.1%).The incidence of penicillin resistance in the blood/CSF and sputum isolates was 66.7% and 55.6%,respectively.Statistical analysis showed that patients ≤5 years old had a higher resistance to penicillin when they compared with the patients ≥65 years old (P=0.011).Serotypes 14,19A and 19F were significantly associated with penicillin resistance (P 〈0.001).ST320,ST271,and ST876 isolates showed high resistant rates to several antibiotics including penicillin (P=0.006).All of the isolates of serotype 19A were resistant to both penicillin and erythromycin,and they were all multi-drug resistant (MDR) isolates.Conclusions The specificity and sensitivity of multiplexPCR are good,and this method represents a substantial savings of time and money,and can be widely used in the laboratory and clinical practice.Data from this research showed an extremely high prevalence of penicillin resistance and an increasing prevalence of multi-drug resistant (MDR) rate in S.pneumoniae.A distinctive emergence of serotype 19A was observed which was also associated with the increasing prevalence of antimicrobial resistance.Therefore,nationwide surveillance of pneumococcal resistance and serotypes is strongly warranted.
文摘Background According to data from the China Hospital Invasive Fungal Surveillance Net (CHIF-NET) 2010, Candida tropica/is (C. tropica/is) is the third most common pathogen causing invasive candidiasis. Moreover, the majority of fluconazole-resistant C. tropicalis isolates were from a single hospital. Therefore, a molecular epidemiological survey is necessary to investigate the genetic relatedness of C. tropica/is isolates in China. Methods In this study, 48 C. tropicalis isolates causing invasive fungal infections from four tertiary hospitals in China were studied. All the isolates were identified by sequencing the internal transcribed spacer region. Antifungal susceptibility to triazoles, amphotericin B, and caspofungin was determined by the Clinical and Laboratory Standards Institute standard broth microdilution method. Multilocus sequence typing (MLST) was performed, and phylogenetic analysis was further performed by the eBURST and maximum parsimony (MP) methods to characterize the genetic relatedness of isolates. Results MLST discriminated 40 diploid sequence types (DSTs) among 48 isolates, including 36 novel DSTs, and the XYR1 gene showed the highest discriminatory power. The DSTs obtained from this study were compared with those of previously reported C. tropicalis isolates, and there was poor type alignment with regional strains. Nine groups and 11 singletons were identified by eBURST, whereas two groups and 10 subgroups were clustered by MP analysis. Generally, there were no obvious correlations between clonal clusters generated and the specimen source or hospital origin. Seven fiuconazole-resistant isolates were confirmed and assigned to three distinguishable branches. Conclusions The results suggested diverse origins of invasive C. tropicalis isolates in China. Although most invasive C. tropicalis strains in the mainland of China were clustered with previously characterized Asian isolates, major C. tropicalis clusters identified in this study were genetically distinct from those of other geographic regions.
文摘Background Multi-locus sequence typing (MLST) is widely used to explore the population structure of numerous bacterial pathogens. However, for genotypically-restricted pathogens, the sensitivity of MLST is limited by a paucity of variation within selected loci. For Bartonella henselae (B. henselae), although the MLST scheme currently used has been proven useful in defining the overall population structure of the species, its reliability for the accurate delineation of closely-related sequence types, between which allelic variation is usually limited to, at most, one or two nucleotide polymorphisms. Exploitation of high-throughput sequencing data allows a more informed selection of MLST loci and thus, potentially, a means of enhancing the sensitivity of the schemes they comprise. Methods We carried out SOLID resequencing on 12 representative B. henselae isolates and explored these data using single nucleotide polymorphism (SNP) analysis. We determined the number and distribution of SNPs in the genes targeted by the established MLST scheme and modified the position of loci within these genes to capture as much genetic variation as possible. Results Using genome-wide SNP data, we found the distribution of SNPs within each open reading frame (ORF) of MLST loci, which were not represented by the established B. henselae MLST scheme. We then modified the position of loci in the MLST scheme to better reflect the polymorphism in the ORF as a whole. The use of amended loci in this scheme allowed previously indistinguishable ST1 strains to be differentiated. However, the diversity of B. henselae was still rare in China. Conclusions Our study demonstrates the use of SNP analysis to facilitate the selection of MLST loci to augment the currently-described scheme for B. henselae. And the diversity among B. henselae strains in China is markedly less than that observed in B. henselae populations elsewhere in the world.
基金supported by the Special Scientific Research Fund in the Public Interest of National Health and Family Planning Commission(no.201302006)the Xinjiang Nature Science Foundation(2016D01A065)National Key Programfor Infectious Diseases of China(2013ZX10004221 and 2014ZX10004003).
文摘The Gram-negative bacterial genus Brucella includes six classic species based on host specificity,pathogenicity and phenotypic differences.Four more Brucella species were identified in 2007.Although many Brucella genomes have been sequenced,genome sequences and analysis of Brucella strains isolated in China are still scarce.An efficient genome-based Brucella typing method is also needed.In this study,we used the minimum core genome(MCG)typing method to identify and type Brucella strains.Twenty Brucella isolates fromChinawere newly sequenced.The genome sequences of 55 representative Brucella strainswere downloaded.Among the 75 genomes,1089 genes and 52,030 single nucleotide polymorphisms(SNPs)shared by all isolates were considered as the MCG genes and MCG SNPs.Using these 52,030 MCG SNPs,Brucella was divided into six MCG groups.In addition,average nucleotide identity(ANI)values and the distributions of 184 virulence genes were all computed.The proportions of virulence genes were 90.96%,93.56%,95.89%,86.04%,85.78%and 91.87%for MCG groups 1 to 6,respectively.The intragroup ANI values were higher than the intergroup values,further confirming the validity of the MCG taxonomy classification.Brucella melitensis and Brucella abortus,the two main Brucella species pathogenic to humans,were well separated from other species.With the development and cost reduction of next-generation sequencing,theMCG typing method can be used for rapid identification of Brucella,which can contribute to the rapid diagnosis of brucellosis and ensure timely and effective treatment.
基金This work was supported by the National Key Research and Development.Program of China(No.2022YFD1800400)the National Natural Science Foundation of China(No.32072921)the Fundamental Research Funds for the Central Universities(No.2020 BC112).
文摘Salmonella is a significant foodborne zoonotic pathogen that endangers both human and animal health.The goal of this research is to gain a preliminary understanding of Salmonella contamination and antimicrobial resistance in the chicken production chain in Hubei Province,China.1149 animal and environmental samples were collected from chicken farms,slaughterhouses,and retail markets in six cities across Hubei Province in China from 2019 to 2020,yielding Salmonella isolation rates of 4.68%(28/598),12.21%(47/385),and 9.64%(16/166),respectively.Seventeen distinct serotypes were detected among 53 non-clonal Salmonella strains,of which Meleagridis(26.42%,14/53)was the dominant serotype.Almost half of the strains(49.06%,26/53)were multi-drug resistant(MDR).Whole-genome sequencing(WGS)showed that 10 resistance genes(tetA,bla_(TEM),parC,qnrs1,floR,aac(6'-ly,aph(6)-ld,aph(3")-b,aac(6')-laa and sul2)and 7 categories of virulence genes were present in all three links in 22 non-clonal dominant serotype strains.It was shown that Salmonella in the chicken production chain in Hubei Province had a high resist-ance rate to Tetracycline(TET,73.58%),Ofloxacin(OFL,69.81%),Florfenicol(FFC,60.38%)and Ampicillin(AMP,39.62%)which was consistent with the widespread use of these drugs in the husbandry industry in China.Salmonella ST types determined by MLST and serotypes determined by WGS had a one-to-one correlation.Minimum spanning tree analysis revealed that there was cross contamination of Salmonella in farms and slaughterhouses,slaughterhouses and markets,animal samples and environmental samples.This work provides useful information for the prevention and control of contamination and antimicrobial resistance of Salmonella in the chicken production chain,as well as demonstrating the dependable role of WGS in Salmonella molecular typing.
基金Joint Seismological Science Foundation of China (105076) and continued subject ″Statistic Features of Aftershock Sequences and Forecast of the Large Aftershocks″ (2004BA601B01-04-02), Ministry of Science and Technology of China in the 10th Five-Year Plan.
文摘Based on 294 earthquake sequences with magnitude greater than or equal to 5.0 occurred in Chinese mainland since 1970, the spatial distribution features of sequence types have been studied. In southwestern China, it takes mainshock-aftershock sequence type (MAT) as the major in Chuan-Dian rhombic block and concerned Xianshuihe-Anninghe-Xiaojiang seismic belt, as well as in Jinshajiang-Honghe seismic belt. Multiple mainshock type (MMT) mainly distributes in western Yunnan, and Longlin and Lancang areas in Tengchong-Baoshan block in west of Nujiang-Lancangjiang fault zone. A few isolated earthquake type (IET) mainly occurred in northwestern Sichuan and there is no IET occurred in Yunnan region. In northwestern China, it takes mainshock-aftershock sequence type (MAT) as the major in west segment of South Tianshan in Xinjiang region. Some MMT also occurred in this area in the intersection of Kalpin block and the Puchang fault zone. It takes IET as the major in middle Tianshan in Xinjiang. Along the Qilianshan seismic belt, most of sequences are MAT. In Qinghai region, it takes MAT as the major, but the regional feature of the spatial distribution of sequence types is not very clear. In North China, it takes MAT as the major in Yinshan-Yanshan-Bohai seismic belt, north edge of North China, and in Hebei plain seismic belt, as well as in sub-plate of lower river area of Yangtze River. In intersection of north segment of Shanxi seismic belt and the NW-trending Yinshan-Yanshan-Bohai seismic belt, there are several moderate or strong MMT with magnitude from 5.0 to 6.0 occurred. In south of North China around the latitude line of 35°N, it takes IET as the major. The spatial distribution of sequence types is relevant to the patterns of tectonic movements. MAT is mostly produced by the ruptures of locked units or asperities or the neonatal separating segments inside the fault zones. MMT is generally relevant to the conjugate structures or intersection of many tectonic settings. Further extension of simple fault often produces IET. Spatial distribution of sequence types is also correlative to the regional and deep environment of crustal medium to some extent. MAT mainly distributes in high velocity area in upper crust or in the transition zone between high velocity area and low velocity area, MMT mostly occurred in the low velocity area in upper crust.
基金supported by the Teaching and Research Award Fund for Outstanding Young Teachers in Higher Educations of MOE,P.R.C.the National Natural Science Foundation of P.R.C.No.19801023
文摘In this paper, we investigate the problem of approximating solutions of the equations of Lipschitzian ψ-strongly accretive operators and fixed points of Lipschitzian ψ-hemicontractive operators by lshikawa type iterative sequences with errors. Our results unify, improve and extend the results obtained previously by several authors including Li and Liu (Acta Math. Sinica 41 (4)(1998), 845-850), and Osilike (Nonlinear Anal. TMA, 36(1)(1999), 1-9), and also answer completely the open problems mentioned by Chidume (J. Math. Anal. Appl. 151 (2)(1990), 453-461).
基金sponsored jointly by the Earthquake Scientific Research Program(200708020)the State Scientific and Technologic Support Programof the tenth"Five-Year Plan"(200704032006BAC01B030202)
文摘The aftershock activity of the May 12, 2008 Wenchuan Ms8.0 Earthquake Sequence shows an obvious segmented feature. Most of the large aftershocks were distributed in the north and south parts of the aftershock zone. Thrusting was dominant with a small amount of strike-slip component in the south part. The aftershock activity decayed gradually, presenting the sequence features of a mainshock-aftershock pattern. The north part was the ending area of the malnshock fracture where strike-slipping was dominant, showing an obvious swarm feature. Therefore it became the major area for large aftershocks. The modulation of the earth tide on aftershock activity is remarkable; most large aftershocks occur during the period of flood and neap tide. The time period around 16:00 was the dominant occurring time for large aftershocks. The p-value, a parameter of modified Omori formula, increases gradually with time, and reaches about 1 at the end. Based on previous study, the sequence patterns, magnitude of maximum aftershock, as well as the duration of aftershock activity has been discussed. The primary results also show that the magnitude difference between the maiushock and the maximum aftershock is proportional to the rupture size of the maiushock for huge earthquakes of about Ms8.0. This means that when the magnitudes of the earthquakes are nearly the same, large rupture size corresponds to sufficient energy release.
文摘In this paper, we take occurrence process of early strong aftershocks of a main after shock type′s earthquake sequence as a complex grey system, and introduce predicting method for its stronger aftershocks by grey predicting theory. Through inspection prediction for 1998 Zhangbei M S=6.2 earthquake sequence, it shows that the grey predicting method maybe has active significance for the investigation of quick response prediction problems of stronger aftershocks of an earthquake sequence.
文摘Currently, Portuguese teaching prioritizes the study of text sequence types and genres. All the didactic material and activity in the classroom are guided by this study. Because the narrative text type is one of the first which the student has contact with, it will be the focus of this work. This article aims to present a didactic sequence along the lines of Dolz, Noverraz, and Schneuwly (2004), using the fable and tale genres in order to contribute to the development and appropriation, by the students, of the structural and linguistic characteristics of these genres and the type that makes it up. This sequence of activities is fundamental to work with text production, as it greatly contributes to the writing teaching.
文摘In this study the authors compared the sequence types (STs) designed by sequence based typing (SBT) of 4 clinical and 12 environmental strains of Legionella pneumophila serogroup 1 (LP1) which were isolated from hospital facilities for the mentally disabled. The strains were selected after a retrospective surveillance of 565 clinical records (2002-2009) and investigations of water circuit. It was possible to correlate two clinical strains with the corresponding environment, which were collected from showers that had exposed the patients (ST685, ST16) and two clinical strains present in the same structure (STI). The other environmental strains were isolated from water in the department with confirmed or suspected clinical cases. All the strains (seven) from the first structure had ST188; two from the second structure had ST34; and the last from the third structure, gave an ST694. The results were compared with the European Working Group for Legionella Infections (EWGLI) database: the ST 1, 16, 34 and 188 were already known in literature, among clinical and nosocomial cases, especially for ST 1, the most distributed worldwide. Two STs were new to the database. ST685 was isolated both from a patient and from the water; ST694, which was found exclusively in the environmental compartment of a control structure (no cases of legionellosis and low number of nosocomial pneumonia), was unknown in the literature and the authors could only speculate on its possible minor virulence and/or distribution. The implementation of SBT and international comparisons may be useful to gain genotypic knowledge of circulating environmental strains, also verifying their presence in the clinical setting.
基金Open Foundation for State Key Laboratory of Loess and Quaternary Geology,Institute of Earth Environment,Chinese Academy of Sciences(No.SKLLQG0701)Hunan Province Key Subject Construction Item(No.ZRDL0701)Open Foundation for State Key Laboratory of Continental Dynamics,Northwest University(No.DL2006001)
文摘Through the scientific investigation on Lushan for a long time, detailed studies have been carried out on the geologic stratum section of Late Quaternary in Dajiaochang. The series age data of complete stratigraphic section and full time formation since 400 kaBP were based on the results of the analyses using the dating methods with various instruments such as the ancient geomagnetism, electronics spin resonance (ESR), 36C1 and lumines- cence dating, etc. Corresponding to these data, it identified the paleomagnetic polarity events including Biwa- III event (320 kaBP), Biwa- 1I event (260 kaBP), Biwa- I event (180 kaBP, scarcity due to the disturbance of the iron dish), Blake event (100 kaBP) and Laschamp event (20 kaBP, didn't grow due to the activities of the surface), etc. Combined with the sequence stratigraphy, layer type characteristics and its sediment environment, the strati- graphic can be divided into 4 stages of development respectively : Stage [ is the climate period of glacial epoch (200-400 kaBP); stage 11 is the climate period of interglacial epoch (100-200 kaBP); stage llI is the climate peri- od of periglacial epoch (10-100 kaBP); stage IV is the climate period ofpostglacial epoch (0-10 kaBP).
基金supported by Research Fund from Ministry of Health and Ministry of Science and Technology of the People’s Republic of China,2013ZX10004221,2012ZX10004215,and 2011CB504900
文摘Objective To characterize the meningococcal strains isolated from cases and close contacts with meningococcal disease associated with an outbreak in a jail in May 2010 by investigating the national distribution of hyperinvasive ST-4821 serogroup C clone associated with this outbreak. Methods The cases were described based on the clinical symptoms and laboratory results. Pharyngeal swabs were cultured for N. meningitidis from men in the jail. Meningococcal isolates were identified by serogrouping, pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST), respectively. Four hundred and sixteen serogroup C N. meningitidis strains were collected from 27 provinces between 2003 and 2010 for a nationwide survey and analyzed by PFGE and MLST. Results Three persons in a jail system were infected with invasive N. meningitidis serogroup C. All isolates tested had matching PFGE patterns and belonged to the multilocus sequence type (ST) 4821 clonal complex. All 47 N. meningitidis strains were identified from the pharyngeal swabs of 166 peoples in the jail, and 26 of them belonged to ST-4821 serogroup C clone, and 90.14% (375/416) serogroup C strains identified in the nationwide survey belonged to the ST-4821 complex. The ST-4821 serogroup C clone was spread nationwide, distributed in 24 provinces, especially in eastern provinces between 2003 and 2010. Conclusion Endemic transmission and carriage rate of ST-4821 serogroup C clone are high in this jail system. The ST-4821 serogroup C clone is spreading in China and nationwide distributed despite the existence of some effective vaccines.
基金supported by the National Natural Science Foundation of China grant numbers NSFC 81861138053 and NSFC 31761133004。
文摘Objective This study aimed to evaluate the genetic diversity,virulence,and antimicrobial resistance of Aeromonas isolates from clinical patients,tap water systems,and food.Methods Ninety Aeromonas isolates were obtained from Ma’anshan,Anhui province,China,and subjected to multi-locus sequence typing(MLST)with six housekeeping genes.Their taxonomy was investigated using concatenated gyr B-cpn60 sequences,while their resistance to 12 antibiotics was evaluated.Ten putative virulence factors and several resistance genes were identified by PCR and sequencing.Results The 90 Aeromonas isolates were divided into 84 sequence types,80 of which were novel,indicating high genetic diversity.The Aeromonas isolates were classified into eight different species.PCR assays identified virulence genes in the isolates,with the enterotoxin and hemolysin genes act,aer A,alt,and ast found in 47(52.2%),13(14.4%),22(24.4%),and 12(13.3%)of the isolates,respectively.The majority of the isolates(≥90%)were susceptible to aztreonam,imipenem,cefepime,chloramphenicol,gentamicin,tetracycline,and ciprofloxacin.However,several resistance genes were detected in the isolates,as well as a new mcr-3 variant.Conclusions Sequence type,virulence properties,and antibiotic resistance vary in Aeromonas isolates from clinical patients,tap water systems,and food.
基金supported by Sanming Project of Medicine in Shenzhen[SZSM201803081]Shenzhen Technology and Innovation Plan,China[JCYJ 20140416095154399]Nanshan District Technology and Innovation Plan,Shenzhen,China[2016064]
文摘Objective To investigate genetic and antibiotic resistance characteristics of Campylobacter jejuni(C. jejuni) isolated from Shenzhen. Methods Multilocs sequence typing and agar dilution methods were used to define the genotype and antibiotic resistance of C. jejuni, respectively. Results In total, 126 C. jejuni strains were isolated. The prevalence of C. jejuni was 5.3% in diarrheal patients. The prevalence in poultry meat(36.5%) was higher than that in cattle meat(1.1%). However, the prevalence in poultry cloacal swabs(27.0%) was lower than that in cattle stool(57.3%). Sixty-two sequence types were obtained, among which 27 of the STs and 10 alleles were previously unreported. The most frequently observed clonal complexes were ST-21(11.9%), ST-22(10.3%), and ST-403(7.1%). ST-21, ST-45, ST-354, ST-403, and ST-443 complexes overlapped between isolates from patients and cattle, whereas ST-45 and ST-574 complexes overlapped between isolates from patients and poultry. All C. jejuni were resistant to at least one antibiotic. The highest resistance rate was toward ciprofloxacin(89.7%), followed by tetracycline(74.6%), and nalidixic acid(69.0%). Conclusion This is the first report of the genotypes and antibiotic resistance of C. jejuni in Shenzhen. Overlapping clonal complexes were found between isolates from patients and cattle, and between patients and poultry.
基金The National Basic Research Program of China(973 Program)(No.2010CB732404,2011CB933404)the National Natural Science Foundation of China(No.81172697,81170492,81001244)+1 种基金the Specialized Research Fund for the Doctoral Program of Higher Education(No.20110092120055)the Foundation of the State Key Laboratory of Bioelectronics of Southeast University
文摘An alcohol dehydrogenase (ADH)-coexisted solidstate electrochemiluminescence (ECL) biosensor for sensitive detection of the p53 gene was developed. The electrode modified by multiwalled carbon nanotubes, Ru(bpy)]2+3 and polypyrrole ( MWNTs-Ru (bpy) ]2+3 -PPy ) was prepared to adsorb the ssDNA by electrostatic interactions. Then, the ssDNA recognized the gold nanoparticles (AuNPs)-labeled p53 gene and produced the AuNPs-dsDNA electrode with the AuNPs layer. The AuNPs layer adsorbed the ADH molecules for producing the ECL signal. Thus, the biosensor was based on coupling enzyme substrate reaction with solid-state ECL detection, and it displayed good sensitivity and specificity. The detection limit of the wild type p53 sequence (wtp53) is as low as 0. 1 pmol/L and the discrimination is up to 57. 1% between the wtp53 and the muted type p53 sequence (mtp53). The amenability of this method to the analyses of p53 from normal and cancer cell lysates is demonstrated. The signal of wtp53 in the MGC-803 gastric cancer cell lysates turns out to be about 61.8% that of the wtp53 in the GES-1 normal gastric mucosal cell lysates, and the concentration of the wtp53 is found to decrease about 59 times. The method is highly complementary to enzyme-linked immunosorbent assay (ELISA), and it holds promise for the diagnosis and management of cancer.
基金funded by the Ministry of Higher Education under Fundamental Research Grant Scheme(FRGS/1/2023/WAB04/UPM/01/4).
文摘and pili genes are also investigated.Methods:This multicentre,prospective,observational study is conducted in seven major tertiary hospitals in Malaysia among non-pregnant adults.Simultaneously,a retrospective study is conducted in the selected hospitals with similar approaches.GBS isolates are subjected to phenotyping,serotyping by multiplex PCR,antimicrobial susceptibility testing and PCR-detection of GBS virulence and pilus genes.Seven housekeeping genes are amplified and sequenced for multi-locus sequence typing.Discussion:Findings from the study may contribute to the management of clinical practice to diagnose and prevent GBS related diseases in a timely manner.Prudent use of antibiotics is encouraged by monitoring antimicrobial resistance.
基金supported by the National Natural Science Foundation of China Program[No.31871773 and No.31820103010]Projects of Innovation and Development Pillar Program for Key Industries in Southern Xinjiang of Xinjiang Production and Construction Corps[2018DB002]+2 种基金National First-Class Discipline Program of Food Science and Technology[JUFSTR20180102]the BBSRC Newton Fund Joint Centre AwardCollaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province。
文摘Bacillus coagulans can help ameliorate or prevent gastrointestinal diseases, but the genetic relationships among B. coagulans isolates are not well studied. Multilocus sequence typing analysis was conducted on 57 isolates of B. coagulans from 22 provinces or autonomous regions in China. B. coagulans isolates were highly diverse and a total of 33(sequence typings) STs were found. These isolates had a weak clonal population structure and strong indications of intraspecies recombination. The evolution direction of B. coagulans was not correlated with geography or isolation source. Fifteen strains were selected for further analysis based on proximity relationships from the phylogenetic tree. Five isolates(B. coagulans-1, B. coagulans-10, B. coagulans-39, B. coagulans-70 and B. coagulans-71) with good spore-forming ability relative to the rest of the isolates were evaluated for constipation relief. B. coagulans-39 significantly relieved constipation symptoms in mice by regulating intestinal flora, increasing the production of short-chain fatty acids and restoring the level of gastrointestinal regulatory peptides. Comparative genomic analysis showed the beneficial effects of B. coagulans-39 might be associated with specific functional genes that are involved in the utilization of various carbohydrates as primary substrates and short-chain fatty acid production.
基金supported by grants from the Ministry of Health,Labor,and Welfare of Japan(21KA1004).
文摘Beef is a source of human Campylobacter infections.Antimicrobial treatment is needed when patients are immuno‑compromised or have other comorbidities.Therefore,we investigated the prevalence and antimicrobial resistance of Campylobacter spp.in beef cattle in Japan.Rectal swab samples were collected from 164 beef cattle at an abattoir between March 2021 and August 2021,and Campylobacter spp.were isolated from 94(57.3%)cattle.C.jejuni and C.coli were isolated from 68 and 26 cattle,respectively.For Campylobacter jejuni,the resistant rates against ampicillin,tetracycline and ciprofoxacin were 20.6,75.0 and 64.7%,respectively.For C.coli,the resistant rates against ampicil‑lin,tetracycline and ciprofoxacin were 53.8,76.9 and 88.5%,respectively.No Campylobacter isolates were resistant to erythromycin.By multilocus sequence typing,C.jejuni and C.coli isolates were classifed into 22 and 2 sequence types(STs).The top three STs of C.jejuni were ST806(12 isolates),ST21(nine isolates),and ST459(eight isolates).The most frequent ST of C.coli was ST1068(23 isolates).The results suggest that Campylobacter spp.are prevalent in the gastrointestinal tract of beef cattle slaughtered at abattoirs.Furthermore,the administration of erythromycin is efec‑tive against human campylobacteriosis caused by beef consumption.Monitoring the prevalence and antimicrobial resistance of Campylobacter spp.in beef cattle could be useful for managing the risk of human campylobacteriosis.