The nucleotide sequence of shallot yellow stripe virus from onion(SYSV-O)in Shaanxi Province of China was described.It was 10427 nucleotides(nt)in length excluding the poly(A)tail and was predicted to encode a polypro...The nucleotide sequence of shallot yellow stripe virus from onion(SYSV-O)in Shaanxi Province of China was described.It was 10427 nucleotides(nt)in length excluding the poly(A)tail and was predicted to encode a polyprotein of 3340 amino acids(aa)with a calculated molecular weight of 379.7kD.SYSV was most closely related to onion yellow dwarf virus(OYDV)and resembled it in having a much larger P3 protein than other species in the genus.SYSV-O shared 93.2% nt identity to the published sequence of a welsh onion isolate of SYSV(SYSV-ZQ2).The two isolates differed in NIb-CP cleavage site,that of SYSV-O was Q/V but Q/A in SYSV-ZQ2.Nucleotide identity of coat protein genes amongst all SYSV sequences ranged from 87.3%-84.1%.Phylogenetic tree analysis based on the 3’-terminal nucleotide sequences of SYSV isolates confirmed the existence of four distinct groups that were partially related to geographical origin and host plant species.展开更多
文摘The nucleotide sequence of shallot yellow stripe virus from onion(SYSV-O)in Shaanxi Province of China was described.It was 10427 nucleotides(nt)in length excluding the poly(A)tail and was predicted to encode a polyprotein of 3340 amino acids(aa)with a calculated molecular weight of 379.7kD.SYSV was most closely related to onion yellow dwarf virus(OYDV)and resembled it in having a much larger P3 protein than other species in the genus.SYSV-O shared 93.2% nt identity to the published sequence of a welsh onion isolate of SYSV(SYSV-ZQ2).The two isolates differed in NIb-CP cleavage site,that of SYSV-O was Q/V but Q/A in SYSV-ZQ2.Nucleotide identity of coat protein genes amongst all SYSV sequences ranged from 87.3%-84.1%.Phylogenetic tree analysis based on the 3’-terminal nucleotide sequences of SYSV isolates confirmed the existence of four distinct groups that were partially related to geographical origin and host plant species.
