Intestinal microbes are closely related to vital host functions such as digestion and nutrient absorption,which play important roles in enhancing host adaptability.As a natural“laboratory”,caves provide an outstandi...Intestinal microbes are closely related to vital host functions such as digestion and nutrient absorption,which play important roles in enhancing host adaptability.As a natural“laboratory”,caves provide an outstanding model for understanding the significance of gut microbes and feeding habits in the habitat adaptability of hosts.However,research on the relationship between gut microbes,feeding habits,and the adaptability of troglobites remains insufficient.In this study,we compared the characteristics of the intestinal microbes of Sinocyclocheilus cavefish and surface fish and further established the relationship between intestinal and habitat microbes.Furthermore,we conducted environmental DNA(eDNA)(metabarcoding)analysis of environmental samples to clarify the composition of potential food resources in the habitats of the Sinocyclocheilus cavefish and surface fish.Results showed that the structure of the Sinocyclocheilus gut microbes was more related to ecological type(habitat type)than phylogenetic relationships.While horizontal transfer of habitat microbes was a source of gut microbes,hosts also showed strong selection for inherent microbes as dominant microorganisms.Differences in the composition and structure of gut microbes,especially dominant microbes,may enhance the adaptability of the two Sinocyclocheilus fish types from the perspectives of food intake,nutrient utilization,and harmful substance metabolism,suggesting that food resources,predation patterns,intestinal flora,digestive and absorptive capacity,and feeding habits and preferences are linked to habitat adaptability.These results should facilitate our understanding of the significance of fish gut microbes to habitat adaptation and provide a new perspective for studying the adaptive mechanisms of cavefish.展开更多
Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China. Several species possess a conspicuous horn on their head, which has been suggested as a constructive troglomorphic trait but lacks substan...Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China. Several species possess a conspicuous horn on their head, which has been suggested as a constructive troglomorphic trait but lacks substantial evidence. We used non- invasive, high spatial resolution synchrotron X-ray microtomography to investigate the three-dimensional (3D) morphology of the horn of Sinocyclocheilus hyalinus, one of eight such troglobiotic species. 3D renderings demonstrated the osteological components, which were comprised of a rear wall comprised of the supraoccipital bone, a remaining frontal wall with numerous fenestrae, and the bottom continuous with the parietal and epiotic. A horn cavity occurred within the horn. The fenestrae in the frontal wall were continuous in the horn cavity and showed elaborate channeling, and were, connected to the cranial cavity by soft tissue. We tentatively called this configuration the "otocornual connection" due to its anatomic and putative functional similarity to the otolateralic connection in clupeids and loricariids, which provide an indirect pathway to enhance perception of underwater sound signals. This study provides a functional morphology context for further histological and physiological investigations of such horn structures in Sinocyclocheilus cavefish, and we suggest that the horn might enhance acoustic perception to compensate for visual loss in subterranean life, which warrants future physiological examination as lab-reared S. hyalinus become available.展开更多
Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China.Several species possess a conspicuous horn on their head,which has been suggested as a constructive troglomorphic trait but lacks substanti...Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China.Several species possess a conspicuous horn on their head,which has been suggested as a constructive troglomorphic trait but lacks substantial evidence.We used non-invasive,high spatial resolution synchrotron X-ray microtomography to investigate the three-dimensional(3D)morphology of the horn of Sinocyclocheilus hyalinus,one of eight such troglobiotic species.3D renderings demonstrated the osteological components,which were comprised of a rear wall comprised of the supraoccipital bone,a remaining frontal wall with numerous fenestrae,and the bottom continuous with the parietal and epiotic.A horn cavity occurred within the horn.The fenestrae in the frontal wall were continuous in the horn cavity and showed elaborate channeling,and were,connected to the cranial cavity by soft tissue.We tentatively called this configuration the“otocornual connection”due to its anatomic and putative functional similarity to the otolateralic connection in clupeids and loricariids,which provide an indirect pathway to enhance perception of underwater sound signals.This study provides a functional morphology context for further histological and physiological investigations of such horn structures in Sinocyclocheilus cavefish,and we suggest that the horn might enhance acoustic perception to compensate for visual loss in subterranean life,which warrants future physiological examination as lab-reared S.hyalinus become available.展开更多
Modern accumulations of genetic data offer unprecedented opportunities for understanding the systematic classification and origins of specific groups of organisms.The genus Sinocyclocheilus is among the most cave abun...Modern accumulations of genetic data offer unprecedented opportunities for understanding the systematic classification and origins of specific groups of organisms.The genus Sinocyclocheilus is among the most cave abundant genera in Cyprinidae,with 76 recognized species,belonging to 4 species groups.Recent phylogenetic studies have shown that the classification of species groups within the genus Sinocyclocheilus remains controversial.In this study,we constructed a sequence supermatrix of 26 species from 4 species groups of the genus Sinocyclocheilus using the mitochondrial genome to reveal phylogenetic relationships,historical biogeography and patterns of species diversification in the genus Sinocyclocheilus.Phylogenetic analysis strongly supports the monophyletic groups of the 3 species groups(S.jii,S.cyphotergous,and S.tingi groups)except the S.angularis group.Phylogenetic analysis showed that S.anshuiensis and S.microphthalmus,which were recognized as numbers of S.angularis group,formed a strongly supported independent clade.Therefore,we propose a new species group,the S.microphthalmus group,which contains S.anshuiensis and S.microphthalmus.Biogeographic reconstruction suggests that the living Sinocyclocheilus may have originated in north-central Guangxi at the late Eocene and dispersed outward after a vicariance at 32.31 Million years ago(Ma).Early diversification is focused on the late Oligocene(ca.25 Ma),which is related to the second uplift of the Qinghai−Tibetan Plateau and the lateral extrusion of the Indochina at the Oligocene/Miocene boundary.Our results suggest that 2 uplifts of the Qinghai−Tibetan Plateau and climate change in the Miocene may have influenced the diversification of the Sinocyclocheilus lineage.展开更多
The genus Sinocyclocheilus (golden-line barbel) includes 25species of cave-dwelling blind fish (cavefish)and more than 30 surface-dwelling species with normal vision.Cave environments are dark and generally nutrient-p...The genus Sinocyclocheilus (golden-line barbel) includes 25species of cave-dwelling blind fish (cavefish)and more than 30 surface-dwelling species with normal vision.Cave environments are dark and generally nutrient-poor with few predators.Cavefish of several genera evolved convergent morphological adaptations in visual,pigmentation,brain,olfactory,and digestive systems. We compared brain morphology and gene expression patterns in a cavefish Sinocyclocheilus anophthalmus with those of a closely related surface-dwelling species S.angustiporus.Results showed that cavefish have a longer olfactory tract and a much smaller optic tectum than surface fish.Transcriptomics by RNA-seq revealed that many genes upregulated in cavefish are related to lysosomes and the degradation and metabolism of proteins,amino acids,and lipids.Genes down- regulated in cavefish tended to involve "activation of gene expression in cholesterol biosynthesis" and cholesterol degradation in the brain.Genes encoding Srebfs (sterol regulatory element- binding transcription factors)and Srebf targets,including enzymes in cholesterol synthesis,were downregulated in cavefish brains compared with surface fish brains.The gene encoding Cyp46a1, which eliminates cholesterol from the brain,was also downregulated in cavefish brains,while the total level of cholesterol in the brain remained unchanged.Cavefish brains misexpressed several genes encoding proteins in the hypothalamus-pituitary axis,including Trh,Sst,Crh,Pomc,and Mc4r.These results suggest that the rate of lipid biosynthesis and breakdown may both be depressed in golden-line cavefish brains but that the lysosome recycling rate may be increased in cavefish;properties that might be related to differences in nutrient availability in caves.展开更多
基金supported by the National Natural Science Foundation of China(32260310,31560111)Top Young Talents Program of the Ten-Thousand Plan of Yunnan Province(YNWR-QNBJ-2018-024)Scientific Research Fund of Yunnan Provincial Education Department,China(2020Y0014)。
文摘Intestinal microbes are closely related to vital host functions such as digestion and nutrient absorption,which play important roles in enhancing host adaptability.As a natural“laboratory”,caves provide an outstanding model for understanding the significance of gut microbes and feeding habits in the habitat adaptability of hosts.However,research on the relationship between gut microbes,feeding habits,and the adaptability of troglobites remains insufficient.In this study,we compared the characteristics of the intestinal microbes of Sinocyclocheilus cavefish and surface fish and further established the relationship between intestinal and habitat microbes.Furthermore,we conducted environmental DNA(eDNA)(metabarcoding)analysis of environmental samples to clarify the composition of potential food resources in the habitats of the Sinocyclocheilus cavefish and surface fish.Results showed that the structure of the Sinocyclocheilus gut microbes was more related to ecological type(habitat type)than phylogenetic relationships.While horizontal transfer of habitat microbes was a source of gut microbes,hosts also showed strong selection for inherent microbes as dominant microorganisms.Differences in the composition and structure of gut microbes,especially dominant microbes,may enhance the adaptability of the two Sinocyclocheilus fish types from the perspectives of food intake,nutrient utilization,and harmful substance metabolism,suggesting that food resources,predation patterns,intestinal flora,digestive and absorptive capacity,and feeding habits and preferences are linked to habitat adaptability.These results should facilitate our understanding of the significance of fish gut microbes to habitat adaptation and provide a new perspective for studying the adaptive mechanisms of cavefish.
基金supported by the fund of State Key Laboratory of Genetic Resources and Evolution(GREKF13-06)
文摘Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China. Several species possess a conspicuous horn on their head, which has been suggested as a constructive troglomorphic trait but lacks substantial evidence. We used non- invasive, high spatial resolution synchrotron X-ray microtomography to investigate the three-dimensional (3D) morphology of the horn of Sinocyclocheilus hyalinus, one of eight such troglobiotic species. 3D renderings demonstrated the osteological components, which were comprised of a rear wall comprised of the supraoccipital bone, a remaining frontal wall with numerous fenestrae, and the bottom continuous with the parietal and epiotic. A horn cavity occurred within the horn. The fenestrae in the frontal wall were continuous in the horn cavity and showed elaborate channeling, and were, connected to the cranial cavity by soft tissue. We tentatively called this configuration the "otocornual connection" due to its anatomic and putative functional similarity to the otolateralic connection in clupeids and loricariids, which provide an indirect pathway to enhance perception of underwater sound signals. This study provides a functional morphology context for further histological and physiological investigations of such horn structures in Sinocyclocheilus cavefish, and we suggest that the horn might enhance acoustic perception to compensate for visual loss in subterranean life, which warrants future physiological examination as lab-reared S. hyalinus become available.
基金This work was partially supported by the fund of State Key Laboratory of Genetic Resources and Evolution(GREKF13-06)。
文摘Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China.Several species possess a conspicuous horn on their head,which has been suggested as a constructive troglomorphic trait but lacks substantial evidence.We used non-invasive,high spatial resolution synchrotron X-ray microtomography to investigate the three-dimensional(3D)morphology of the horn of Sinocyclocheilus hyalinus,one of eight such troglobiotic species.3D renderings demonstrated the osteological components,which were comprised of a rear wall comprised of the supraoccipital bone,a remaining frontal wall with numerous fenestrae,and the bottom continuous with the parietal and epiotic.A horn cavity occurred within the horn.The fenestrae in the frontal wall were continuous in the horn cavity and showed elaborate channeling,and were,connected to the cranial cavity by soft tissue.We tentatively called this configuration the“otocornual connection”due to its anatomic and putative functional similarity to the otolateralic connection in clupeids and loricariids,which provide an indirect pathway to enhance perception of underwater sound signals.This study provides a functional morphology context for further histological and physiological investigations of such horn structures in Sinocyclocheilus cavefish,and we suggest that the horn might enhance acoustic perception to compensate for visual loss in subterranean life,which warrants future physiological examination as lab-reared S.hyalinus become available.
基金This work was supported by the Top Discipline Construction Program of Guizhou Province(Qianjaokeyan[2019]No.125)the programs of the Strategic Priority Research Program B of the Chinese Academy of Sciences(CAS)(No.XDB31000000)+1 种基金the National Animal Collection Resource Center,China(No.2005DKA21402)the Application of Amphibian Natural Antioxidant Peptides as Cosmetic Raw Material Antioxidants(No.QKZYD[2020]4002).
文摘Modern accumulations of genetic data offer unprecedented opportunities for understanding the systematic classification and origins of specific groups of organisms.The genus Sinocyclocheilus is among the most cave abundant genera in Cyprinidae,with 76 recognized species,belonging to 4 species groups.Recent phylogenetic studies have shown that the classification of species groups within the genus Sinocyclocheilus remains controversial.In this study,we constructed a sequence supermatrix of 26 species from 4 species groups of the genus Sinocyclocheilus using the mitochondrial genome to reveal phylogenetic relationships,historical biogeography and patterns of species diversification in the genus Sinocyclocheilus.Phylogenetic analysis strongly supports the monophyletic groups of the 3 species groups(S.jii,S.cyphotergous,and S.tingi groups)except the S.angularis group.Phylogenetic analysis showed that S.anshuiensis and S.microphthalmus,which were recognized as numbers of S.angularis group,formed a strongly supported independent clade.Therefore,we propose a new species group,the S.microphthalmus group,which contains S.anshuiensis and S.microphthalmus.Biogeographic reconstruction suggests that the living Sinocyclocheilus may have originated in north-central Guangxi at the late Eocene and dispersed outward after a vicariance at 32.31 Million years ago(Ma).Early diversification is focused on the late Oligocene(ca.25 Ma),which is related to the second uplift of the Qinghai−Tibetan Plateau and the lateral extrusion of the Indochina at the Oligocene/Miocene boundary.Our results suggest that 2 uplifts of the Qinghai−Tibetan Plateau and climate change in the Miocene may have influenced the diversification of the Sinocyclocheilus lineage.
基金financially supported by grants from the National Natural Science Foundation of China NSFC31372191(F.W.M.),NSFC31471961 (Y.H.Z.) NIH grants NIH R01 OD011116(J.H.P.) R24RR032670 (J.H.P.).
文摘The genus Sinocyclocheilus (golden-line barbel) includes 25species of cave-dwelling blind fish (cavefish)and more than 30 surface-dwelling species with normal vision.Cave environments are dark and generally nutrient-poor with few predators.Cavefish of several genera evolved convergent morphological adaptations in visual,pigmentation,brain,olfactory,and digestive systems. We compared brain morphology and gene expression patterns in a cavefish Sinocyclocheilus anophthalmus with those of a closely related surface-dwelling species S.angustiporus.Results showed that cavefish have a longer olfactory tract and a much smaller optic tectum than surface fish.Transcriptomics by RNA-seq revealed that many genes upregulated in cavefish are related to lysosomes and the degradation and metabolism of proteins,amino acids,and lipids.Genes down- regulated in cavefish tended to involve "activation of gene expression in cholesterol biosynthesis" and cholesterol degradation in the brain.Genes encoding Srebfs (sterol regulatory element- binding transcription factors)and Srebf targets,including enzymes in cholesterol synthesis,were downregulated in cavefish brains compared with surface fish brains.The gene encoding Cyp46a1, which eliminates cholesterol from the brain,was also downregulated in cavefish brains,while the total level of cholesterol in the brain remained unchanged.Cavefish brains misexpressed several genes encoding proteins in the hypothalamus-pituitary axis,including Trh,Sst,Crh,Pomc,and Mc4r.These results suggest that the rate of lipid biosynthesis and breakdown may both be depressed in golden-line cavefish brains but that the lysosome recycling rate may be increased in cavefish;properties that might be related to differences in nutrient availability in caves.