The soil Microbial Carbon Pump as a new concept for terrestrial carbon sequestration

Soil is a huge terrestrial carbon pool, which has higher carbon storage than the sum of atmospheric and terrestrial vegetation carbon. Small fluctuations in soil carbon pool can affect regional carbon flux and global climate change. As soil organic carbon plays key roles in soil carbon storage and sequestration, studying its composition, sources and stability mechanism is a key to deeply understand the functions of terrestrial ecosystem and how it will respond to climate changes. The recently-proposed concept of soil Microbial Carbon Pump(MCP) emphasizes the importance of soil microbial anabolism and its contributions to soil carbon formation and stabilization, which can be applied for elucidating the source, formation and sequestration of soil organic carbon. This article elaborates MCP-mediated soil carbon sequestration mechanism and its influencing factors, as well as representative scientific questions we may explore with the soil MCP conceptual framework.

Seasonal variation in soil microbial biomass carbon and nitrogen in an artificial sand-binding vegetation area in Shapotou, northern China

In this study, seasonal variation characteristics of surface soil microbial biomass carbon （MBC） and soil microbial biomass nitrogen （MBN） of an artificial vegetation area located in Shapotou for different time periods were studied using the chloroform fumigation method, and the results were compared with those of near-natural vegetation areas and mobile dunes. Results showed that the MBC and MBN levels in the 0-5 cm soil layer were higher in autumn than in summer and spring. As the prolongation of vegetation restoration raised the MBC and MBN levels in summer and autumn, no clear variation was found in spring. However, the MBC and MBN in 5-20 cm had no obvious seasonal variation. During summer and autumn, the variation trend of MBC and MBN in the vertical direction was shown to be 0-5 〉 5-10 〉 10-20 cm in the vegetation area, while for mobile dunes, the MBC and MBN levels increased as the depth increased. The natural vegetation area was shown to possess the highest MBC and MBN levels, and yet mobile dunes have the lowest MBC and MBN levels. MBC and MBN levels in artificial sand-binding vegetation increased with the prolongation of vegetation restoration, indicating that the succession of sand-binding vegetation will result in the ac- cumulation of soil carbon and nitrogen, as well as the restoration of soil fertility.

Microbial community structure and functional metabolic diversity are associated with organic carbon availability in an agricultural soil

Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental characteristics especially organic carbon availability after 15-yr different organic and inorganic fertilizer inputs on soil bacterial community structure and functional metabolic diversity of soil microbial communities were evaluated in a 15-yr fertilizer experiment in Changping County, Beijing, China. The experiment was a wheat-maize rotation system which was established in 1991 including four different fertilizer treatments. These treatments included： a non-amended control（CK）, a commonly used application rate of inorganic fertilizer treatment（NPK）; a commonly used application rate of inorganic fertilizer with swine manure incorporated treatment（NPKM）, and a commonly used application rate of inorganic fertilizer with maize straw incorporated treatment（NPKS）. Denaturing gradient gel electrophoresis（DGGE） of the 16 S r RNA gene was used to determine the bacterial community structure and single carbon source utilization profiles were determined to characterize the microbial community functional metabolic diversity of different fertilizer treatments using Biolog Eco plates. The results indicated that long-term fertilized treatments significantly increased soil bacterial community structure compared to CK. The use of inorganic fertilizer with organic amendments incorporated for long term（NPKM, NPKS） significantly promoted soil bacterial structure than the application of inorganic fertilizer only（NPK）, and NPKM treatment was the most important driver for increases in the soil microbial community richness（S） and structural diversity（H）. Overall utilization of carbon sources by soil microbial communities（average well color development, AWCD） and microbial substrate utilization diversity and evenness indices（H＇ and E） indicated that long-term inorganic fertilizer with organic amendments incorporated（NPKM, NPKS） could significantly stimulate soil microbial metabolic activity and functional diversity relative to CK, while no differences of them were found between NPKS and NPK treatments. Principal component analysis（PCA） based on carbon source utilization profiles also showed significant separation of soil microbial community under long-term fertilization regimes and NPKM treatment was significantly separated from the other three treatments primarily according to the higher microbial utilization of carbohydrates, carboxylic acids, polymers, phenolic compounds, and amino acid, while higher utilization of amines/amides differed soil microbial community in NPKS treatment from those in the other three treatments. Redundancy analysis（RDA） indicated that soil organic carbon（SOC） availability, especially soil microbial biomass carbon（Cmic） and Cmic/SOC ratio are the key factors of soil environmental characteristics contributing to the increase of both soil microbial community structure and functional metabolic diversity in the long-term fertilization trial. Our results showed that long-term inorganic fertilizer and swine manure application could significantly improve soil bacterial community structure and soil microbial metabolic activity through the increases in SOC availability, which could provide insights into the sustainable management of China＇s soil resource.

Influence of Salt Content on Soil Microbial Biomass Carbon

Soil salinization has become a global issue. Saline and alkaline arable land was taken as research object in this paper and four salt gradients were set(S1: 0.1%; S2:0. 5%; S3:0.9%; S4:1.3%). Through the addition of different substrates( CK: no addition of substrate; N: addition of nitrogen source; C: addition of glucose,C + N: addition of glucose and nitrogen source) to soil,it analyzed the influence of salt content on the soil microbial biomass carbon( SMBC) for the purpose of surveying the response mechanism of soil carbon turnover to salt stress. Results indicated that after addition of different substrates,the SMBC in high salt content(S3 and S4) is obviously lower than that in low salt content( S1 and S2). The decline rate of S3 and S4 is 5. 4% and 14. 2% for no addition of substrate; the decline rate is 9.0% and 24.0% for addition of nitrogen source; the decline rate is 11.5% and 28.0% for addition of carbon source; the decline rate is 19.5% and 39.5% for addition of carbon source + nitrogen source. Compared with no addition of substrates,addition of nitrogen source could not increase the SMBC. Addition of carbon source and carbon + nitrogen can significantly increase the SMBC,and the increase in low salt content soil( 80.0%- 81.0% and 58.0%- 59.0%) is obviously higher than high salt content soil( 52.0%- 69.0%and 34.0%- 50.0%). Generally,when the soil salt content is low( 0.5%),the influence of different substrate treatment is little on the SMBC,and increasing the soil salt content can obviously reduce the SMBC.

Linkages between soil microbial stability and carbon storage in the active layer under permafrost degradation

The Qinghai-Tibet Plateau(QTP)distributes the largest extent of high-altitude mountain permafrost in the world(Zou et al.,2017),which has different characteristics from high-latitude permafrost(Yang et al.,2010)and stores massive soil carbon.

Effects of Different Land Cover Types on Soil Microbial Biomass Carbon and Nitrogen in the Lower Reaches of Niyang River

[Objectives]To comprehensively and deeply explore the effects of different land cover types in the lower reaches of Niyang River on soil microbial biomass carbon and nitrogen,and to provide a scientific basis for the rational use and sustainable management of land resources in this area.[Methods]Taking the 3 types of land cover(cultivated land,grass land and forest land)in the lower reaches of Niyang River in Tibet as the research object,the contents,distribution characteristics and relationships of soil organic carbon,organic nitrogen,microbial biomass carbon,microbial biomass nitrogen and readily oxidizable organic carbon,and their relationships were studied in 0-10,10-20,20-40,40-60,and 60-100 cm soil depth.[Results]The soil organic carbon content of forest land was higher than that of grass land and cultivated land;the vertical change trend of soil organic carbon content decreased with the increase of depth(P<0.05),and it was mainly concentrated in the soil with a depth of 0-20 cm.The soil organic carbon content was significantly different among forest land,grass land and cultivated land(P<0.05),but there was no significant difference between cultivated land and grass land(P>0.05).The soil organic nitrogen content was significantly different among cultivated land,grass land,and forest land(P<0.05),but there was no significant difference between grass land and forest land(P>0.05).The readily oxidizable organic carbon,microbial biomass carbon and nitrogen in forest land were higher than that in cultivated land and grass land.The change trend of soil readily oxidizable organic carbon,microbial biomass carbon and microbial biomass nitrogen was similar to the change of soil organic carbon content,showing a significant positive correlation.In addition to being subject to land cover,soil microbial biomass carbon and nitrogen content were also subject to the interaction of factors such as soil temperature,humidity,pH and vegetation types.[Conclusions]Changes in land cover significantly affect soil organic carbon and nitrogen,readily oxidizable organic carbon,microbial biomass carbon and nitrogen content.

Seasonal dynamics of soil microbial biomass C and N of Keteleeria fortunei var. cyclolepis forests with different ages

Soil microbial biomass is an important indicator to measure the dynamic changes of soil carbon pool.It is of great signifi cance to understand the dynamics of soil microbial biomass in plantation for rational management and cultivation of plantation.In order to explore the temporal dynamics and infl uencing factors of soil microbial biomass of Keteleeria fortunei var.cyclolepis at diff erent stand ages,the plantation of diff erent ages(young forest,5 years;middle-aged forest,22 years;mature forest,40 years)at the Guangxi Daguishan forest station of China were studied to examine the seasonal variation of their microbial biomass carbon(MBC)and microbial biomass nitrogen(MBN)by chloroform fumigation extraction method.It was found that among the forests of diff erent age,MBC and MBN diff ered signifi cantly in the 0–10 cm soil layer,and MBN diff ered signifi cantly in the 10–20 cm soil layer,but there was no signifi cant diff erence in MBC for the 10–20 cm soil layer or in either MBC or MBN for the 20–40 cm soil layer.With increasing maturity of the forest,MBC gradually decreased in the 0–10 cm soil layer and increased fi rstly and then decreased in the 10–20 cm and 20–40 cm soil layers,and MBN increased fi rstly and then decreased in all three soil layers.As the soil depth increased,both MBC and MBN gradually decreased for all three forests.The MBC and MBN basically had the same seasonal variation in all three soil layers of all three forests,i.e.,high in the summer and low in the winter.Correlation analysis showed that MBC was signifi cantly positively correlated with soil organic matter,total nitrogen,and soil moisture,whereas MBN was signifi cantly positively correlated with soil total nitrogen.It showed that soil moisture content was the main factor determining the variation of soil microbial biomass by Redundancy analysis.The results showed that the soil properties changed continuously as the young forest grew into the middle-aged forest,which increased soil microbial biomass and enriched the soil nutrients.However,the soil microbial biomass declined as the middle-age forest continued to grow,and the soil nutrients were reduced in the mature forest.

Changes in Organic Carbon Index of Grey Desert Soil in Northwest China After Long-Term Fertilization

Soil organic carbon （SOC）, soil microbial biomass carbon （SMBC） and SMBC quotient （SMBC/SOC, qSMBC） are key indexes of soil biological fertility because of the relationship to soil nutrition supply capacity. Yet it remains unknown how these three indexes change, which limits our understanding about how soil respond to different fertilization practices. Based on a 22-yr （1990-2011） long-term fertilization experiment in northwest China, we investigated the dynamics of SMBC and qSMBC during the growing period of winter wheat, the relationships between the SMBC, qSMBC, soil organic carbon （SOC） concentrations, the carbon input and grain yield of wheat as well. Fertilization treatments were 1） nonfertilization （control）; 2） chemical nitrogen plus phosphate plus potassium （NPK）; 3） NPK plus animal manure （NPKM）; 4） double NPKM （hNPKM） and 5） NPK plus straw （NPKS）. Results showed that the SMBC and qSMBC were significantly different among returning, jointing, flowering and harvest stages of wheat under long-term fertilization. And the largest values were observed in the flowering stage. Values for SMBC and qSMBC ranged from 37.5 to 106.0 mg kg1 and 0.41 to 0.61%, respectively. The mean value rank of SMBC during the whole growing period of wheat was hNPKM〉NPK_M〉NPKS〉CK〉NPK. But there were no statistically significant differences between hNPKM and NPKM, or between CK and NPK. The order for qSMBC was NPKS〉NPKM〉CK〉hNPKM〉NPK. These results indicated that NPKS significantly increased the ratio of SMBC to SOC, i.e., qSMBC, compared with NPK fertilizer or other two NPKM fertilizations. Significant linear relationships were observed between the annual carbon input and SOC （P〈0.01） or SMBC （P〈0.05）, and between the relative grain yield of wheat and the SOC content as well （P〈0.05）. But the qSMBC was not correlated with the annual carbon input. It is thus obvious that the combination of manure, straw with mineral fertilizer may be benefit to increase SOC and improve soil quality than using only mineral fertilizer.

Changes of soil microbial communities during decomposition of straw residues under different land uses

Monitoring soil microbial communities can lead to better understanding of the transformation processes of organic carbon in soil. The present study investigated the changes of soil microbial communities during straw decomposition in three fields, i.e., cropland, peach orchard and vineyard. Straw decomposition was monitored for 360 d using a mesh-bag method. Soil microbial metabolic activity and functional diversity were measured using the Biolog-Eco system. In all three fields, dried straws with a smaller size decomposed faster than their fresh counterparts that had a larger size. Dried corn straw decomposed slower than dried soybean straw in the early and middle stages, while the reverse trend was found in the late stage. The cropland showed the highest increase in microbial metabolic activity during the straw decomposition, whereas the peach orchard showed the lowest. There was no significant change in the species dominance or evenness of soil microbial communities during the straw decomposition. However, the species richness fluctuated significantly, with the peach orchard showing the highest richness and the cropland the lowest. With different carbon sources, the peach orchard utilised carbon the most, followed by the cropland and the vineyard. In all three fields, carbon was utilized in following decreasing order： saccharides〉amino acids〉polymers〉polyamines〉carboxylic acids〉aromatic compounds. In terms of carbon-source utilization, soil microbial communities in the peach orchard were less stable than those in the cropland. The metabolic activity and species dominance of soil microbial communities were negatively correlated with the straw residual percentage. Refractory components were primarily accumulated in the late stages, thus slowing down the straw decomposition. The results showed that dried and crushed corn straw was better for application in long-term fields. The diversity of soil microbial communities was more stable in cropland than in orchards during the straw decomposition.

Effects of Caragana microphylla plantations on organic carbon sequestration in total and labile soil organic carbon fractions in the Horqin Sandy Land, northern China

Afforestation is conducive to soil carbon（C） sequestration in semi-arid regions. However, little is known about the effects of afforestation on sequestrations of total and labile soil organic carbon（SOC） fractions in semi-arid sandy lands. In the present study, we examined the effects of Caragana microphylla Lam. plantations with different ages（12-and 25-year-old） on sequestrations of total SOC as well as labile SOC fractions such as light fraction organic carbon（LFOC） and microbial biomass carbon（MBC）. The analyzed samples were taken from soil depths of 0–5 and 5–15 cm under two shrub-related scenarios： under shrubs and between shrubs with moving sand dunes as control sites in the Horqin Sandy Land of northern China. The results showed that the concentrations and storages of total SOC at soil depths of 0–5 and 5–15 cm were higher in 12-and 25-year-old C. microphylla plantations than in moving sand dunes（i.e., control sites）, with the highest value observed under shrubs in 25-year-old C. microphylla plantations. Furthermore, the concentrations and storages of LFOC and MBC showed similar patterns with those of total SOC at the same soil depth. The 12-year-old C. microphylla plantations had higher percentages of LFOC concentration to SOC concentration and MBC concentration to SOC concentration than the 25-year-old C. microphylla plantations and moving sand dunes at both soil depths. A significant positive correlation existed among SOC, LFOC, and MBC, implying that restoring the total and labile SOC fractions is possible by afforestation with C. microphylla shrubs in the Horqin Sandy Land. At soil depth of 0–15 cm, the accumulation rate of total SOC under shrubs was higher in young C. microphylla plantations（18.53 g C/（m^2·a）; 0–12 years） than in old C. microphylla plantations（16.24 g C/（m^2·a）; 12–25 years）, and the accumulation rates of LFOC and MBC under shrubs and between shrubs were also higher in young C. microphylla plantations than in old C. microphylla plantations. It can be concluded that the establishment of C. microphylla in the Horqin Sandy Land may be a good mitigation strategy for SOC sequestration in the surface soils.

Changes in the activities of key enzymes and the abundance of functional genes involved in nitrogen transformation in rice rhizosphere soil under different aerated conditions

Soil microorganisms play important roles in nitrogen transformation. The aim of this study was to characterize changes in the activity of nitrogen transformation enzymes and the abundance of nitrogen function genes in rhizosphere soil aerated using three different methods(continuous flooding(CF), continuous flooding and aeration(CFA), and alternate wetting and drying(AWD)). The abundances of amoA ammonia-oxidizing archaea(AOA) and ammonia-oxidizing bacteria(AOB), nirS, nirK, and nifH genes, and the activities of urease, protease, ammonia oxidase, nitrate reductase, and nitrite reductase were measured at the tillering(S1), heading(S2), and ripening(S3) stages. We analyzed the relationships of the aforementioned microbial activity indices, in addition to soil microbial biomass carbon(MBC) and soil microbial biomass nitrogen(MBN), with the concentration of soil nitrate and ammonium nitrogen. The abundance of nitrogen function genes and the activities of nitrogen invertase in rice rhizosphere soil were higher at S2 compared with S1 and S3 in all treatments. AWD and CFA increased the abundance of amoA and nifH genes, and the activities of urease, protease, and ammonia oxidase, and decreased the abundance of nirS and nirK genes and the activities of nitrate reductase and nitrite reductase, with the effect of AWD being particularly strong. During the entire growth period, the mean abundances of the AOA amoA, AOB amoA, and nifH genes were 2.9, 5.8, and 3.0 higher in the AWD treatment than in the CF treatment, respectively, and the activities of urease, protease, and ammonia oxidase were 1.1, 0.5, and 0.7 higher in the AWD treatment than in the CF treatment, respectively. The abundances of the nirS and nirK genes, and the activities of nitrate reductase and nitrite reductase were 73.6, 84.8, 10.3 and 36.5% lower in the AWD treatment than in the CF treatment, respectively. The abundances of the AOA amoA, AOB amoA, and nifH genes were significantly and positively correlated with the activities of urease, protease, and ammonia oxidase, and the abundances of the nirS and nirK genes were significantly positively correlated with the activities of nitrate reductase. All the above indicators were positively correlated with soil MBC and MBN. In sum, microbial activity related to nitrogen transformation in rice rhizosphere soil was highest at S2. Aeration can effectively increase the activity of most nitrogen-converting microorganisms and MBN, and thus promote soil nitrogen transformation.

Linking microbial carbon pump capacity and efficacy to soil organic carbon storage and stability under heavy metal pollution

Heavy metal pollution can lead to a great loss of soil organic carbon(SOC).However,the microbial mechanisms that link heavy metal pollution to SOC remain poorly understood.Here,we investigated five apple-orchard soils at different distances from a Pb-Zn smelter.After assessing the heavy metal pollution level based on Grade Ⅱ of the national soil environmental quality standard(China),we found SOC stocks and microbial carbon pump(MCP)capacity(i.e.,microbial residue carbon)under medium and heavy pollution levels were significantly lower than those under safe,cordon and light pollution levels.The structural equation model showed causality in the SOC variations linked to pollution level through MCP capacity,which could contribute 77.8% of the variance in SOC storage.This verified MCP capacity can serve as a key parameter for evaluation of SOC storage under heavy metal pollution.Soil MCP efficacy,i.e.,the proportion of microbial residue carbon to SOC,also decreased under medium and heavy pollution.This suggested that,with a heavier pollution level,there was a higher rate of reduction of microbial residue carbon in soil than the rate of reduction of SOC.As MCP efficacy can be a useful assessment of SOC stability,the significantly positive relationship between MCP efficacy and clay content in correlation analysis implied that lower MCP efficacy was correlated with SOC stability under the heavier pollution level.Our study provides valuable insights to identify the mechanisms of microbially mediated C transformation processes that are influenced by heavy metal pollution in agroecosystems.

Land rehabilitation improves edaphic conditions and increases soil microbial biomass and abundance

Rehabilitation of farmland improves the local eco-environmental conditions.But to what extent this transformation influences soil microbial properties is less known.In our study we compared variations in soil microbial attributes following changes in land-use types to understand the influence of altered soil properties on microbial biomass and their community structure using chloroform fumigation extraction method and phospholipid fatty acid(PLFA)analysis.For this purpose,3 agricultural(AL)(farmland,apple orchard and 2 years abandoned land)and 4 rehabilitated lands(RL)of various vegetations grassland,shrubland,mixed forest(Amorpha fruticosa and Pinus tabuliformis Carr.)and forest(Robinia pseudoacacia)were selected.Our results showed higher soil organic carbon(SOC)contents in RL soils(forest>mixed forest>grassland>shrub land)than that in AL soils.In RL soils,soil microbial biomass and abundance of group specific PLFA were significantly higher than those in AL soils.Under different land-use types,microbial community was bacteria dominated over fungi.The microbial physiological indices(G^(+)/G^(-),cyc/prec and S/M)indicated decreased environmental stress in RL soils in comparison with AL soils.In loess soils,SOC and total N correlated positively(p<0.05)with microbial biomass C,N and P and also with fungal and bacterial PLFA,indicating a positive microbial mediation in improving soil fertility.Taking together,our findings suggest that land rehabilitation,especially Robinia pseudoacacia planation,improves overall edaphic conditions and accelerates soil microbial biomass accumulation in local regions.