Shifts in soil bacterial communities induced by the controlled-release fertilizer coatings

Coated controlled-release fertilizers （CRFs） have been widely applied in agriculture due to their increased efficiency. However, the widespread and a lot of coated CRFs application may leave undesired coating residues in the soil due to their slow degradation. Limited information is available on the effects of substantial residual coatings on the soil bacterial community. By adding 0, 5, 10, 20, and 50 times quantities of residual coating from conventional application amount of resin and water-soluble coated CRFs, we studied the responses of soil properties and bacterial community composition to these two residual coatings in black soil. The results showed that the resin and water-soluble coatings did not essentially alter the properties of black soil or cause dramatic changes to bacterial diversity within the test concentration range. The residual resin and water-soluble coatings also did not distinctly alter the relative abundance of the top ten bacteria at phylum level. Heatmap results suggested that the treatments were basically clustered into two groups by concentration rather than types of coating material. Pearson correlation analysis showed that the Simpson＇s diversity index of the bacterial community was significantly correlated with microbial biomass carbon （MBC, r=0.394, P〈0.05）, and the richness index abundance-based coverage estimator （ACE） of the bacterial community was significantly correlated with microbial biomass nitrogen （MBN, t=0.407, P〈0.05）. Overall, results of this study suggested that substantial residual resin and water-soluble coatings with 0-50 times quantities of residual coating from conventional application amount of coated CRFs did not generate obviously negative impacts on the bacterial community in black soil.

Resistance potential of soil bacterial communities along a biodiversity gradient in forest ecosystems

Higher biodiversity is often assumed to be a more desirable scenario for maintaining the functioning of ecosystems,but whether species-richer communities are also more disturbance-tolerant remains controversial.In this study,we investigated the bacterial communities based on 472 soil samples from 28 forests across China with associated edaphic and climatic properties.We developed two indexes(i.e.,community mean tolerance breadth[CMTB]and community mean response asynchrony[CMRA])to explore the relationship between diversity and community resistance potential.Moreover,we examined this resistance potential along the climatic and latitudinal gradients.We revealed that CMTB was significantly and negatively related to species richness,resulting from the changes in balance between relative abundances of putative specialists and generalists.In comparison,we found a unimodal relationship between CMRA and richness,suggesting that higher biodiversity might not always lead to higher community resistance.Moreover,our results showed differential local patterns along latitude.In particular,local patterns in the northern region mainly followed general relationships rather than those for the southern forests,which may be attributed to the differences in annual means and annual variations of climate conditions.Our findings highlight that the community resistance potential depends on the composition of diverse species with differential environmental tolerance and responses.This study provides a new,testable evaluation by considering tolerance breadth and response asynchrony at the community level,which will be helpful in assessing the influence of disturbance under rapid shifts in biodiversity and species composition as a result of global environmental change.

Co-invasion of daisy fleabane and Canada goldenrod pose synergistic impacts on soil bacterial richness

Understanding the impacts of co-invasion of multiple invaders on soil bacterial communities is significant in understanding the mechanisms driving successful invasion.This study aimed to determine the response of soil bacterial communities to co-invasion of two invaders daisy fleabane(Erigeron annuus)and Canada goldenrod(Solidago canadensis).Daisy fleabane and/or Canada goldenrod invasion significantly enhanced the operational taxonomic unit richness,Shannon index,and Chao1 index of soil bacterial communities.Canada goldenrod under light degree of invasion and co-invasion of daisy fleabane and Canada goldenrod regardless of invasion degree signally improved the ACE index of soil bacterial communities.Thus,the two invaders can enhance soil bacterial diversity and richness to facilitating subsequent invasion due to the fact that higher soil bacterial diversity and richness can enhance the levels of soil function and nutrients acquisition of plant species.ACE index of soil bacterial communities subjected to co-invasion of daisy fleabane and Canada goldenrod regardless of invasion degree was greater than that under the independent invasion of either daisy fleabane or Canada goldenrod.Hence,co-invasion of the two invaders can impose synergistic impacts on soil bacterial richness,which may build a preferable soil micro-environment via the intensified soil bacterial communities,which is contributive to their following invasion.

Control of Southern Root-knot Nematodes on Tomato and Regulation of Soil Bacterial Community by Biofumigation with Zanthoxylum bungeanum Seed

Biofumigation is an environmentally friendly strategy used to control nematodes and plant diseases.The volatile oil of Zanthoxylum bungeanum has high insecticidal and antibacterial activity.However,it is not known if the seed of Z.bungeanum is a suitable material for biofumigation to control southern root-knot nematodes(SRKN)on tomato,and how it may regulate the soil bacterial community structure.We used pot experiments in the greenhouse to determine the effects of Z.bungeanum seeds on SRKN,plant growth parameters,soil physicochemical and microbial characteristics.A total of 26 volatile components,including nematicidally active substances,were identified from Z.bungeanum seeds.Z.bungeanum seed biofumigation significantly reduced the SRKN population by 88.89%and 81.55%on the 50th and 100th day after transplanting,respectively.Compared to the control,the total soluble sugar,soluble solids,soluble protein,titratable acid,root activity and the fruit yield per tomato plant increased significantly.The content of soil alkali-hydrolyzed nitrogen,available potassium and the soil enzyme activities were also significantly increased.The soil bacterial diversity and the co-occurrence network complexity were increased by Z.bungeanum seed biofumigation.Relativelymore keystone OTUs in biofumigation soil had potential plant growth-promoting capabilities.The function of Z.bungeanum seed increasing tomato production in SRKN-infected soil depends on directly killing SRKN and improving soil properties.These results indicate that Z.bungeanum seed can be used as both a nematicide and a high quality organic fertilizer in tomato production.

Influence of proximity to the Qinghai-Tibet highway and railway on variations of soil heavy metal concentrations and bacterial community diversity on the Tibetan Plateau

An understanding of soil microbial communities is crucial in roadside soil environmental assessments.The 16S rRNA se quencing of a stressed microbial community in soil adjacent to the Qinghai-Tibet Highway(QTH)revealed that the accu mulation of heavy metals(over about 10 years)has affected the diversity of bacterial abundance and microbial community structure.The proximity of a sampling site to the QTH/Qinghai-Tibet Railway(QTR),which is effectively a measure of the density of human engineering,was the dominant factor influencing bacterial community diversity.The diversity of bacterial communities shows that 16S rRNA gene abundance decreased in relation to proximity to the QTH and QTR in both alpine wetland and meadow areas.The dominant phyla across all samples were Actinobacteria and Proteobacteria.The concentration of Cr and Cd in the soil were positively correlated with proximity to the QTH and QTR(MC/WC sam pling sites),and Ni,Co,and V were positively correlated with proximity to the QTH and QTR(MA/WA sampling sites).The results presented in this study provide an insight into the relationships among heavy metals and soil microbial commu nities,and have important implications for assessing and predicting the impacts of human-induced activities from the QTH and QTR in such an extreme and fragile environment.

Soil bacterial characteristics between surface and subsurface soils along a precipitation gradient in the Alxa Desert, China

Bacteria in desert soil have unique phylogeny and important ecological functions, and theirresponses to changes in precipitation need further attention. However, relevant studies have mainlyfocused on the surface soil, and studies on the responses of bacteria at different soil depths to variationsin precipitation are rare. Thus, we used 16S rDNA high-throughput sequencing to investigate the changesin soil bacterial distribution along a mean annual precipitation gradient (50–150 mm) in the Alxa Desert,China, and compared the variation characteristics in the surface soil layer (0–10 cm) and subsurface soillayer (10–20 cm). Results showed that soil bacterial communities significantly changed along theprecipitation gradient in both soil layers. However, the subsurface soil layer could support bacterialcommunities with higher diversity and closer internal relationships but more internal competition than thesurface soil layer. Additionally, compared with the surface soil layer, variations in diversity andco-occurrence patterns in the subsurface soil layer were more in line with the changes in the mean annualprecipitation, while bacterial community structure was less variable in the subsurface soil layer. Comparedwith the mean annual precipitation, soil moisture had little influence on the structure and diversity of soilbacterial community but had a high correlation with intercommunity connectivity. Therefore, soilmoisture might play a complex role in mediating environmental conditions and soil bacterial communitycharacteristics. Due to the different responses of surface and subsurface soil bacteria to the changes inprecipitation, it is necessary to distinguish different soil layers when predicting the trends in desert soilbacterial conditions associated with precipitation, and prediction of subsurface soil bacteria may be moreaccurate.

Halophyte Vegetation Influences Soil Microbial Community of Coastal Salt Marsh

Coastal wetlands are the most productive ecosystems worldwide and can provide important ecosystem services,yet the characteristics of microbial community within these systems remain poorly understood.Microbial community of salt marsh vegetation and the associated soil physio-chemical properties were investigated in this study.Three typical Suaeda australis,Phragmites australis,Spartina alterniflora wetlands,and non-vegetated bare mudflats in the Zhoushan Islands were studied to advance the understanding of the characteristics of soil bacterial communities in coastal wetlands.Results showed that the bare mudflats exhibited high pH value and soil moisture content compared with the vegetated samples.In different vegetation types,the organic matter content,total nitrogen,and total potassium content decreased in the order:S.alterniflora wetland>P.australis wetland>S.australis wetland,and there was no obvious difference in total phosphorous content.The halophytes could decrease soil salinity compared with bare mudflats.Proteobacteria,Nitrospinae,Bacteroidetes,Acidobacteria,and Nitrospirae were the predominant level across all samples.Functional prediction showed that SPA-covered soil might play vital roles in sulphur cycling,while SUA and PHR covered soils were involved in nitrogen cycling.This study could provide the first insight into the microbial community of this study area and contribute to a better understanding of vegetation microbiota and bioremediation in coastal wetland ecosystem.

Comparison of rhizosphere and endophytic microbial communities of Chinese leek through high-throughput 16S rRNA gene Illumina sequencing

Chinese leek（Allium tuberosum Rottler ex Sprengel） is a common vegetable in China. In our previous study, Chinese leek in rotation was found to have significant antifungal and nematicidal activity. This study＇s aim was to investigate the potential antifungal and nematicidal activity associated with rhizosphere or endophytic microbes of Chinese leek. Thus, a total of 79 261 high-quality sequences were obtained from Chinese leek rhizosphere soil, leaf and root samples. In the rhizosphere soil, the bacterial community comprised five dominant phyla： Proteobacteria（37.85%）, Acidobacteria（10.99%）, Bacteroidetes（8.24%）, Cyanobacteria（7.79%） and Planctomycetes（7.1%）. The leaf and root bacterial communities comprised two dominant phyla： Cyanobacteria（83.42% in leaf and 75.44% in root） and Proteobacteria（14.75% in leaf and 21.04% in root）. Microbial diversity, richness and evenness in the rhizosphere soil bacterial community were higher than that in the endophytic bacterial communities. The rhizosphere bacterial community was significantly different from the endophytic bacterial communities. The endophytic bacterial communities from the leaf and the root were slightly, but not significantly different from each other. This study＇s findings would contribute to the isolation and identification of nematicidal and antifungal bacterial communities in Chinese leek.

A rice variety with a high straw biomass retained nitrogen and phosphorus without affecting soil bacterial species

It is well documented that rice paddy fields act as agricultural wetlands that remove or retain nutrients;however,their associated effects on soil microbial communities are rarely reported.The present study evaluates the impact of rice variety on nutrient removal via plant uptake,nutrient retention in the soil,and bacterial associations in rice paddy fields,using a network analysis that compares the soil bacterial communities of two rice varieties.We found that the high-straw rice variety(YD-1)allows uptake of a high amount of nitrogen(N)and phosphorus(P)from paddy rice fields via harvesting,but causes less residual total N and P to remain in the soil.However,both rice varieties(YD-1 and XS-134(Xiushui-134))had non-significant effects on the dominant bacterial taxa.The short-term response of bacterial community diversity to rice variety is found to be mainly due to less frequently recovered species.A network analysis that incorporates soil nutrients as nodes,along with bacterial taxa,found that only one node representing the total P related to the non-dominant species had an indirect association with the rice straw biomass.The observed short-term impact of the two rice varieties(XS-134 and YD-1)on soil bacterial diversity and nutrient surplus in these agricultural wetlands is limited under a high level of fertilization.

Impacts of n-alkane concentration on soil bacterial community structure and alkane monooxygenase genes abundance during bioremediation processes

Petroleum hydrocarbons,mainly consisting of n-alkanes and polycyclic aromatic hydrocarbons(PAHs),are considered as priority pollutants and biohazards in the environment,eventually affecting the ecosystem and human health.Though many previous studies have investigated the change of bacterial community and alkane degraders during the degradation of petroleum hydrocarbons,there is still lack of understanding on the impacts of soil alkane contamination level.In the present study,microcosms with different n-alkane contamination(1%,3%and 5%)were set up and our results indicated a complete alkane degradation after 30 and 50 days in 1%-and 3%-alkane treatments,respectively.In all the treatments,alkanes with medium-chain length(C_(11)-C_(14))were preferentially degraded by soil microbes,followed by C27-alkane in 3%and 5%treatments.Alkane contamination level slightly altered soil bacterial community,and the main change was the presence and abundance of dominant alkane degraders.Thermogemmatisporaceae,Gemmataceae and Thermodesulfovibrionaceae were highly related to the degradation of C_(14)-and C_(27)-alkanes in 5%treatment,but linked to alkanes with medium-chain(C11-C18)in 1%treatment and C21-alkane in 3%treatment,respectively.Additionally,we compared the abundance of three alkane-monooxygenase genes,e.g.,alk_A,alk_P and alk_R.The abundance of alk_R gene was highest in soils,and alk_P gene was more correlated with alkane degradation efficiency,especially in 5%treatment.Our results suggested that alkane contamination level showed non-negligible effects on soil bacterial communities to some extents,and particularly shaped alkane degraders and degrading genes significantly.This study provides a better understanding on the response of alkane degraders and bacterial communities to soil alkane concentrations,which affects their biodegradation process.

Impacts of methamidophos,copper,and their combinations on bacterial community structure and function in black soil

The potential ecotoxicologial risks of methamidophos,copper,and their combinations on microbial community of black soil ecosystem in the Northeast China were assessed in species richness and structures by using 16S rDNA-PCR-DGGE analysis approach,and functional characteristics at community levels by using BIOLOG^(GN) system analysis method as well as two conventional methods(DHA and SIR).All results of DGGE banding fingerprint patterns(amplified by bacterial specific 16S rDNA V_(3) high variable region universal primer)indicated that the species richness of bacterial community in tested soil was significantly decreased to different extents by using different concentrations of single methamidophos,copper,especially some of their combinations had worse effects than their corresponding single factors.In addition,the structures of soil bacterial community had been disturbed under all stresses applied in this study because of the enrichment of some species and the disappearance of other species from the bacterial community.The effects of the single factors with lower concentrations on the communiy structure were weaker than those with higher concentrations.Moreover,the bacterial community structures under the combined stresses of methamidophos and copper were significantly different from those of control and their corresponding single factors.The change of DHA and carbon source substrate utilizing fingerprint patterns based on BIOLOG^(GN)system were two relatively sensitive directors corresponding to the stress presented in this study.Between methamodophos and copper,there happened the significant joint-toxic actions when they were used in combination on DHA and carbon source substrate utilizing fingerprint patterns of soil bacterial communities.The DHA of soil under the combined stresses was lower than that of the control and that under the single factors,and the BIOLOG^(GN) substrate utilizing patterns of soil treated by combinations were distinctively differentiated from the control and their corresponding single factors.From all of above,the methamidophos,copper,especially their combinations had the clearly potential ecotoxicological risks to influence the natural soil microbial ecological system by changing the structure,richness,and the functional characteristics of microbial community.