Traditional Fourier transform infrared(FTIR)spectroscopy has been recognized as a valuable method to characterize and classify kinds of microorganisms.In this study,combined with multivariate statistical analysis,sync...Traditional Fourier transform infrared(FTIR)spectroscopy has been recognized as a valuable method to characterize and classify kinds of microorganisms.In this study,combined with multivariate statistical analysis,synchrotron radiation-based FTIR(SR-FTIR) microspectroscopy was applied to identify and discriminate ten foodborne bacterial strains.Our results show that the whole spectra(3000-900 cm^(-1)) and three subdivided spectral regions(3000-2800,1800-1500 and 1200-900 cm^(-1),representing lipids,proteins and polysaccharides,respectively) can be used to type bacteria.Either the whole spectra or the three subdivided spectra are good for discriminating the bacteria at levels of species and subspecies,but the whole spectra should be given preference at the genus level.The findings demonstrate that SR-FTIR microspectroscopy is a powerful tool to identify and classify foodborne pathogenic bacteria at the genus,species and subspecies level.展开更多
Copper ions(e.g.,Cu^(2+)) have outstanding antibacterial properties,but the exact mechanism is rather complex and not fully understood.In this work,synchrotron Fourier transform infrared(FTIR) spectroscopy was used as...Copper ions(e.g.,Cu^(2+)) have outstanding antibacterial properties,but the exact mechanism is rather complex and not fully understood.In this work,synchrotron Fourier transform infrared(FTIR) spectroscopy was used as an analytical tool to investigate the CuCl_2-induced biochemical changes in Escherichia coli.Our spectral measurements indicated that this technique is sensitive enough to detect changes in membrane lipids,nucleic acids,peptidoglycans and proteins of Cu^(2+)-treated bacteria.Interestingly,for short-time treated cells,the effects on phospholipid composition were clearly shown,while no significant alterations of proteins,nucleic acids and peptidoglycans were found.PeakForce quantitative nano-mechanics mode atomic force microscopy(AFM)confirmed the changes in the topography and mechanical properties of bacteria upon the Cu^(2+) exposure.This study demonstrated that FTIR spectroscopy combined with AFM can provide more comprehensive evaluation on the biochemical and mechanical responses of bacteria to copper.展开更多
Fourier-transform infrared(FTIR) spectroscopy has emerged as a viable alternative to biochemical and molecular biology techniques for bacterial typing with advantages such as short analysis time, low cost and laborato...Fourier-transform infrared(FTIR) spectroscopy has emerged as a viable alternative to biochemical and molecular biology techniques for bacterial typing with advantages such as short analysis time, low cost and laboratorial simplicity. In this study, synchrotron radiationbased FTIR(SR-FTIR) spectroscopy with higher spectral quality was successfully applied to type 16 foodborne pathogenic bacterial strains. Combined with principal component analysis(PCA) and hierarchical cluster analysis(HCA), we found that the specific spectral region1300-1000 cm^(-1), which reflects the information of phosphate compounds and polysaccharides, can be used as the signature region to cluster the strains into groups similar with genetic taxonomic method. These findings demonstrated that FTIR spectra combined with HCA have a great potential in quickly typing bacteria depending on their biochemical signatures.展开更多
The rapid increase in the artificial syntheses of organic pollutants has raised widespread concern.However,the mechanisms by which fungi degrade these new organic pollutants in the environment and adapt to environment...The rapid increase in the artificial syntheses of organic pollutants has raised widespread concern.However,the mechanisms by which fungi degrade these new organic pollutants in the environment and adapt to environmental stressors remain unclear.In this study,Phanerochaete chrysosporium,a model white rot fungus,was used to explore the interfacial processes and mechanisms for synergistic degradation of 4,4′-dichlorobiphenyl(PCB15)with magnetite nanoparticles.The results showed that after 3 and 5 days of cultivation with Phanerochaete chrysosporium alone,the rates for PCB15 degradation were 32%and 65%,respectively,indicating that the white rot fungus itself was able to degrade the organic pollutant.Moreover,the addition of magnetite nanoparticles significantly enhanced the degradation of PCB15 by Phanerochaete chrysosporium.After cocultivation for 3 and 5 days,the rates for PCB15 degradation increased to 42%and 84%,respectively.Synchrotron radiation-based Fourier transform infrared spectromicroscopy(SR-FTIR)showed that the magnetite particles were tightly adhered to the fungal hyphae and were unevenly distributed on the hyphal surfaces.Furthermore,cocultivation of the fungus and magnetite nanoparticles significantly enhanced the nanozymatic activity of magnetite.A linear regression model provided a significantly negative correlation(r=−0.96,p<0.001)between the nanozymatic activity of the magnetite and the concentration ratio of the PCB15,supporting the hypothesis that white rot fungi degraded the PCB15 by enhancing the nanozyme activity of magnetite.High-resolution X-ray photoelectron spectroscopy(XPS)revealed that the nanozymatic activity of magnetite was mainly governed by oxygen vacancies on the mineral surfaces rather than the iron valence.Together,these findings increase our understanding of the powerful capabilities of fungi in terms of stress resistance and adaptation to extreme environments and provide new insights into fungal-mediated degradation of organic pollutants for soil remediation in contaminated sites.展开更多
Morphology and phase compositions of different starch-gelatin blends were investigated by various microscopes： optical, SEM and synchrotron FTIR microscopy. A high amylose （80%） corn starch, grafted with hydroxypro...Morphology and phase compositions of different starch-gelatin blends were investigated by various microscopes： optical, SEM and synchrotron FTIR microscopy. A high amylose （80%） corn starch, grafted with hydroxypropyl to enhance flexibilty and hydrophilicity, and plasticized by poly（ethylene glycol） （PEG）, was used in this work. SEM revealed that the surface became smoother after adding PEG. Optical microscopy observation revealed that compatibility between gelatin and starch was improved by adding PEG. An FTIR beam focused on a 5 ~tm x 5 ~tm detection area by the micro-spectroscope was used to map chemical composition. The ratio of areas of the saccharide bands （1180-953 cm-1） and the amide I and II bands （1750-1483 cm-1） was used to monitor the relative distributions of the two components in the blends. The FTIR maps indicated that gelatin constituted the continuous phase up to 80% of starch content. All of the FTIR spectra showed contributions from both starch and gelatin absorptions, therefore indicating that complete demixing with pure starch and gelatin domains did not occur. The PEG improved the compatibility of the gelatin-starch blends.展开更多
基金supported by Science Frontier Project of the Chinese Academy of Sciences(No.QYZDJ-SSW-SLH019)Open Research Fund Program of Shanghai Key Laboratory of Medical Biodefense
文摘Traditional Fourier transform infrared(FTIR)spectroscopy has been recognized as a valuable method to characterize and classify kinds of microorganisms.In this study,combined with multivariate statistical analysis,synchrotron radiation-based FTIR(SR-FTIR) microspectroscopy was applied to identify and discriminate ten foodborne bacterial strains.Our results show that the whole spectra(3000-900 cm^(-1)) and three subdivided spectral regions(3000-2800,1800-1500 and 1200-900 cm^(-1),representing lipids,proteins and polysaccharides,respectively) can be used to type bacteria.Either the whole spectra or the three subdivided spectra are good for discriminating the bacteria at levels of species and subspecies,but the whole spectra should be given preference at the genus level.The findings demonstrate that SR-FTIR microspectroscopy is a powerful tool to identify and classify foodborne pathogenic bacteria at the genus,species and subspecies level.
基金Supported by National Natural Science Foundation of China(No.11474298)Shanghai Pujiang Program(No.13PJ1410500)+1 种基金Special Funds for Enterprise Independent Innovation of Shanghai(CXY-2013-58)Hundred Talents Program of the Chinese Academy Sciences
文摘Copper ions(e.g.,Cu^(2+)) have outstanding antibacterial properties,but the exact mechanism is rather complex and not fully understood.In this work,synchrotron Fourier transform infrared(FTIR) spectroscopy was used as an analytical tool to investigate the CuCl_2-induced biochemical changes in Escherichia coli.Our spectral measurements indicated that this technique is sensitive enough to detect changes in membrane lipids,nucleic acids,peptidoglycans and proteins of Cu^(2+)-treated bacteria.Interestingly,for short-time treated cells,the effects on phospholipid composition were clearly shown,while no significant alterations of proteins,nucleic acids and peptidoglycans were found.PeakForce quantitative nano-mechanics mode atomic force microscopy(AFM)confirmed the changes in the topography and mechanical properties of bacteria upon the Cu^(2+) exposure.This study demonstrated that FTIR spectroscopy combined with AFM can provide more comprehensive evaluation on the biochemical and mechanical responses of bacteria to copper.
基金supported by the National Natural Science Foundation of China(Nos.U1732130 and 11474298)Key Research Program of Frontier Sciences of the Chinese Academy Sciences(No.QYZDJSSW-SLH019)
文摘Fourier-transform infrared(FTIR) spectroscopy has emerged as a viable alternative to biochemical and molecular biology techniques for bacterial typing with advantages such as short analysis time, low cost and laboratorial simplicity. In this study, synchrotron radiationbased FTIR(SR-FTIR) spectroscopy with higher spectral quality was successfully applied to type 16 foodborne pathogenic bacterial strains. Combined with principal component analysis(PCA) and hierarchical cluster analysis(HCA), we found that the specific spectral region1300-1000 cm^(-1), which reflects the information of phosphate compounds and polysaccharides, can be used as the signature region to cluster the strains into groups similar with genetic taxonomic method. These findings demonstrated that FTIR spectra combined with HCA have a great potential in quickly typing bacteria depending on their biochemical signatures.
基金supported by the National Key Basic Research Program of China(Grant No.2022YFC3701401)the National Natural Science Foundation of China(Grant Nos.U22A20608 and 41977271)Self-Dependent Innovation Foundation of Tianjin University(Grant No.2023XJC-0014).
文摘The rapid increase in the artificial syntheses of organic pollutants has raised widespread concern.However,the mechanisms by which fungi degrade these new organic pollutants in the environment and adapt to environmental stressors remain unclear.In this study,Phanerochaete chrysosporium,a model white rot fungus,was used to explore the interfacial processes and mechanisms for synergistic degradation of 4,4′-dichlorobiphenyl(PCB15)with magnetite nanoparticles.The results showed that after 3 and 5 days of cultivation with Phanerochaete chrysosporium alone,the rates for PCB15 degradation were 32%and 65%,respectively,indicating that the white rot fungus itself was able to degrade the organic pollutant.Moreover,the addition of magnetite nanoparticles significantly enhanced the degradation of PCB15 by Phanerochaete chrysosporium.After cocultivation for 3 and 5 days,the rates for PCB15 degradation increased to 42%and 84%,respectively.Synchrotron radiation-based Fourier transform infrared spectromicroscopy(SR-FTIR)showed that the magnetite particles were tightly adhered to the fungal hyphae and were unevenly distributed on the hyphal surfaces.Furthermore,cocultivation of the fungus and magnetite nanoparticles significantly enhanced the nanozymatic activity of magnetite.A linear regression model provided a significantly negative correlation(r=−0.96,p<0.001)between the nanozymatic activity of the magnetite and the concentration ratio of the PCB15,supporting the hypothesis that white rot fungi degraded the PCB15 by enhancing the nanozyme activity of magnetite.High-resolution X-ray photoelectron spectroscopy(XPS)revealed that the nanozymatic activity of magnetite was mainly governed by oxygen vacancies on the mineral surfaces rather than the iron valence.Together,these findings increase our understanding of the powerful capabilities of fungi in terms of stress resistance and adaptation to extreme environments and provide new insights into fungal-mediated degradation of organic pollutants for soil remediation in contaminated sites.
基金financially supported by the National Natural Science Foundation of China(Nos.21174043 and 31301554)GNSF(S2012040006450)+1 种基金KLGPNPS(201205)FRFCU(2012ZZ0085)
文摘Morphology and phase compositions of different starch-gelatin blends were investigated by various microscopes： optical, SEM and synchrotron FTIR microscopy. A high amylose （80%） corn starch, grafted with hydroxypropyl to enhance flexibilty and hydrophilicity, and plasticized by poly（ethylene glycol） （PEG）, was used in this work. SEM revealed that the surface became smoother after adding PEG. Optical microscopy observation revealed that compatibility between gelatin and starch was improved by adding PEG. An FTIR beam focused on a 5 ~tm x 5 ~tm detection area by the micro-spectroscope was used to map chemical composition. The ratio of areas of the saccharide bands （1180-953 cm-1） and the amide I and II bands （1750-1483 cm-1） was used to monitor the relative distributions of the two components in the blends. The FTIR maps indicated that gelatin constituted the continuous phase up to 80% of starch content. All of the FTIR spectra showed contributions from both starch and gelatin absorptions, therefore indicating that complete demixing with pure starch and gelatin domains did not occur. The PEG improved the compatibility of the gelatin-starch blends.
基金supported in part by the National Key R&D Program of China(2017YFA0303500)the National Natural Science Foundation of China(U1932201,21727801,and 51902303)+4 种基金the National Natural Science Foundation of China-Ministry of Foreign Affairs and International Cooperation of Italy(51861135202)CAS International Partnership Program(211134KYSB20190063)Key Research Program of Frontier Sciences(QYZDB-SSW-SLH018)the University of Science and Technology of China start-up fundCAS Interdisciplinary Innovation Team。
