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Variant TP53BP1 rs560191 G>C is associated with risk of gastric cardia adenocarcinoma in a Chinese Han population
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作者 Sheng Zhang Weifeng Tang +5 位作者 Guowen Ding Chao Liu Ruiping Liu Suocheng Chen Haiyong Gu Chunzhao Yu 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2015年第2期156-162,共7页
Objective: To investigate the association between gastric cardia adenocarcinoma (GCA) and ten functional single nueleotide polymorphisms (SNPs), including TPY3BPI rs560191 G〉C, CASP8 rs1035142 G〉T, CASP7 rs3127... Objective: To investigate the association between gastric cardia adenocarcinoma (GCA) and ten functional single nueleotide polymorphisms (SNPs), including TPY3BPI rs560191 G〉C, CASP8 rs1035142 G〉T, CASP7 rs3127075 G〉C, CASP7 rs7907519 C〉A, and six C1 orf 10/CRNN variants. We performed a hospital- based case-control study to evaluate the genetic effects of these SNPs. Methods: Two hundred and forty-three GCA cases and 476 controls were enrolled in this study. A custom- by-design 48-Plex SNPscanTM Kit was used to determine their genotypes. Results: When the TP^3BP1 rs560191 GG homozygote genotype was used as the reference group, the GC genotype was associated with a significantly increased risk of GCA. The CC genotype was not associated with the risk of GCA compared with the GG genotype. None of the CASP8 rs1035142 G〉T, CASP7 rs3127075 G〉C, CASP7 rs7907519 C〉A or the six ClorflO/CRNN polymorphisms showed a significant difference in genotype distributions between the cases and the controls. Conciusions: The results demonstrated that the functional polymorphism TP53BPI rs560191 G〉C might contribute to GCA susceptibility. However, the statistical power of our study was limited. Large, well- designed studies and further functional investigations are needed to confirm our findings. 展开更多
关键词 tp53bp1 POLYMORPHISMS gastric cardia adenocarcinoma (GCA) molecular epidemiology
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结合亲和质谱与生物信息学分析构建TP53BP1的蛋白相互作用网络 被引量:2
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作者 王浩 王春晴 陈瑞冰 《中国科学:生命科学》 CSCD 北大核心 2018年第2期232-239,共8页
蛋白质与蛋白质相互作用(PPIs)是两个或更多蛋白质分子之间通过静电作用、范德华力等建立的高度特异性的物理接触.细胞内的各种蛋白分子通过PPIs进行彼此之间的功能调节、信号通路的交互作用等,从而实现各种生物进程,而异常的PPIs也将... 蛋白质与蛋白质相互作用(PPIs)是两个或更多蛋白质分子之间通过静电作用、范德华力等建立的高度特异性的物理接触.细胞内的各种蛋白分子通过PPIs进行彼此之间的功能调节、信号通路的交互作用等,从而实现各种生物进程,而异常的PPIs也将导致疾病的发生、发展,其中就包括肿瘤.因此围绕某些和疾病密切相关的关键蛋白构建其相互作用生物网络(interactome)将有助于更好地分析该关键蛋白在疾病中的作用和可能的分子机制.本研究针对抑癌基因p53结合蛋白1(TP53BP1),利用亲和质谱分析鉴定了15个潜在的TP53BP1相互作用蛋白.同时,结合PPI数据库检索构建了与TP53BP1相互作用的蛋白质网络,并对该网络中的蛋白进行了功能富集分析、通路分析,结果显示,TP53BP1相互作用蛋白主要富集在细胞周期、同源重组、错配修复等重要通路,该研究为深入解析TP53BP1的生物学功能及其在肿瘤中的作用奠定了基础. 展开更多
关键词 tp53bp1 蛋白质相互作用 功能富集分析 亲和质谱分析
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