We present the memory size,computational time,and technique aspects of density matrix renormalization group (DMRG) algorithm.We show how to estimate the memory size and computational time before starting a large scale...We present the memory size,computational time,and technique aspects of density matrix renormalization group (DMRG) algorithm.We show how to estimate the memory size and computational time before starting a large scale DMRG calculation.We propose an implementation of the Hamiltonian wavefunction multiplication and a wavefunction initialization in DMRG with block matrix data structure.One-dimensional Heisenberg model is used to illustrate our study.展开更多
We propose an improved real-space parallel strategy for the density matrix renormalization group(DMRG)method,where boundaries of separate regions are adaptively distributed during DMRG sweeps.Our scheme greatly improv...We propose an improved real-space parallel strategy for the density matrix renormalization group(DMRG)method,where boundaries of separate regions are adaptively distributed during DMRG sweeps.Our scheme greatly improves the parallel efficiency with shorter waiting time between two adjacent tasks,compared with the original real-space parallel DMRG with fixed boundaries.We implement our new strategy based on the message passing interface(MPI),and dynamically control the number of kept states according to the truncation error in each DMRG step.We study the performance of the new parallel strategy by calculating the ground state of a spin-cluster chain and a quantum chemical Hamiltonian of the water molecule.The maximum parallel efficiencies for these two models are 91%and 76%in 4 nodes,which are much higher than the real-space parallel DMRG with fixed boundaries.展开更多
We propose a new heterogeneous parallel strategy for the density matrix renormalization group(DMRG)method in the hybrid architecture with both central processing unit(CPU)and graphics processing unit(GPU).Focusing on ...We propose a new heterogeneous parallel strategy for the density matrix renormalization group(DMRG)method in the hybrid architecture with both central processing unit(CPU)and graphics processing unit(GPU).Focusing on the two most time-consuming sections in the finite DMRG sweeps,i.e.,the diagonalization of superblock and the truncation of subblock,we optimize our previous hybrid algorithm to achieve better performance.For the former,we adopt OpenMP application programming interface on CPU and use our own subroutines with higher bandwidth on GPU.For the later,we use GPU to accelerate matrix and vector operations involving the reduced density matrix.Applying the parallel scheme to the Hubbard model with next-nearest hopping on the 4-leg ladder,we compute the ground state of the system and obtain the charge stripe pattern which is usually observed in high temperature superconductors.Based on simulations with different numbers of DMRG kept states,we show significant performance improvement and computational time reduction with the optimized parallel algorithm.Our hybrid parallel strategy with superiority in solving the ground state of quasi-two dimensional lattices is also expected to be useful for other DMRG applications with large numbers of kept states,e.g.,the time dependent DMRG algorithms.展开更多
Chiroptical properties including electronic circular dichroism（ECD） and optical rotatory dispersion（ORD） of artemisinin and artemether have been fully studied using quantum-chemical calculation based on time-depen...Chiroptical properties including electronic circular dichroism（ECD） and optical rotatory dispersion（ORD） of artemisinin and artemether have been fully studied using quantum-chemical calculation based on time-dependent density functional theory.Both theoretical ECD and ORD of these two compounds were in good match with the experimental data.ECD spectrum of artemether could be totally attributed to the peroxide group,and that of artemisinin was an overlay of contribution from δ-lactone and peroxide moieties,which leading to a positive maximum at 260 nm.Our results showed that peroxide group could produce a broad ECD band in the far-UV region originated from electron transitions of HOMO →LUMO,HOMO-1 →LUMO and HOMO-2 →LUMO in the case of artemether.This work provided a theoretical interpretation of the ECD behavior of peroxide bond.展开更多
文摘We present the memory size,computational time,and technique aspects of density matrix renormalization group (DMRG) algorithm.We show how to estimate the memory size and computational time before starting a large scale DMRG calculation.We propose an implementation of the Hamiltonian wavefunction multiplication and a wavefunction initialization in DMRG with block matrix data structure.One-dimensional Heisenberg model is used to illustrate our study.
基金Project supported by the National Natural Science Foundation of China(Grant Nos.11674139,11834005,and 11904145)the Program for Changjiang Scholars and Innovative Research Team in Universities,China(Grant No.IRT-16R35).
文摘We propose an improved real-space parallel strategy for the density matrix renormalization group(DMRG)method,where boundaries of separate regions are adaptively distributed during DMRG sweeps.Our scheme greatly improves the parallel efficiency with shorter waiting time between two adjacent tasks,compared with the original real-space parallel DMRG with fixed boundaries.We implement our new strategy based on the message passing interface(MPI),and dynamically control the number of kept states according to the truncation error in each DMRG step.We study the performance of the new parallel strategy by calculating the ground state of a spin-cluster chain and a quantum chemical Hamiltonian of the water molecule.The maximum parallel efficiencies for these two models are 91%and 76%in 4 nodes,which are much higher than the real-space parallel DMRG with fixed boundaries.
基金Project supported by the National Natural Science Foundation of China(Grant Nos.11674139,11834005,and 11904145)the Program for Changjiang Scholars and Innovative Research Team in University,China(Grant No.IRT-16R35).
文摘We propose a new heterogeneous parallel strategy for the density matrix renormalization group(DMRG)method in the hybrid architecture with both central processing unit(CPU)and graphics processing unit(GPU).Focusing on the two most time-consuming sections in the finite DMRG sweeps,i.e.,the diagonalization of superblock and the truncation of subblock,we optimize our previous hybrid algorithm to achieve better performance.For the former,we adopt OpenMP application programming interface on CPU and use our own subroutines with higher bandwidth on GPU.For the later,we use GPU to accelerate matrix and vector operations involving the reduced density matrix.Applying the parallel scheme to the Hubbard model with next-nearest hopping on the 4-leg ladder,we compute the ground state of the system and obtain the charge stripe pattern which is usually observed in high temperature superconductors.Based on simulations with different numbers of DMRG kept states,we show significant performance improvement and computational time reduction with the optimized parallel algorithm.Our hybrid parallel strategy with superiority in solving the ground state of quasi-two dimensional lattices is also expected to be useful for other DMRG applications with large numbers of kept states,e.g.,the time dependent DMRG algorithms.
基金supported by the Fundamental Research Funds for the Central Institutes of China(No.2012ZD03)
文摘Chiroptical properties including electronic circular dichroism（ECD） and optical rotatory dispersion（ORD） of artemisinin and artemether have been fully studied using quantum-chemical calculation based on time-dependent density functional theory.Both theoretical ECD and ORD of these two compounds were in good match with the experimental data.ECD spectrum of artemether could be totally attributed to the peroxide group,and that of artemisinin was an overlay of contribution from δ-lactone and peroxide moieties,which leading to a positive maximum at 260 nm.Our results showed that peroxide group could produce a broad ECD band in the far-UV region originated from electron transitions of HOMO →LUMO,HOMO-1 →LUMO and HOMO-2 →LUMO in the case of artemether.This work provided a theoretical interpretation of the ECD behavior of peroxide bond.
