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Transcriptome Sequencing and de novo Analysis for Oviductus Ranae of Rana chensinensis Using Illumina RNA-Seq Technology 被引量:7
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作者 Mei Zhang Yuntong Li +3 位作者 Baojin Yao Minying Sun Zhiwu Wang Yu Zhao 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2013年第3期137-140,共4页
Oviductus Ranae is the dried oviduct of female Rana tem-poraria chensinensis (David), distributed mainly in North- eastern China. Oviductus Ranae is one of the best-known and highly valued oriental foods and medicin... Oviductus Ranae is the dried oviduct of female Rana tem-poraria chensinensis (David), distributed mainly in North- eastern China. Oviductus Ranae is one of the best-known and highly valued oriental foods and medicines. Traditional Chinese medicine holds that Oviductus Ranae can nourish yin, moisten lung and replenish the kidney essence. Meanwhile, activities of Oviductus Ranae such as anti-aging, anti-lipemic, anti-oxidation and anti-fatigue have also been demonstrated by modern phar-macological studies. Previous studies have shown that Oviductus Ranae is mainly composed of proteins, which are up to 50% or more. 展开更多
关键词 transcriptome sequencing and de novo analysis for Oviductus Ranae of Rana chensinensis Using Illumina RNA-Seq Technology RNA
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Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through Transcriptome Analysis of Mungbean 被引量:4
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作者 Kyaw Thu Moe Jong-Wook Chung +5 位作者 Young-Il Cho Jung-Kyung Moon Ja-Hwan Ku Jin-Kyo Jung Jungran Lee Yong-Jin Park 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2011年第1期63-73,共11页
Mungbean (Vigna radiata (L.) Wilczek) is a unique species in its ability to fix atmospheric nitrogen, with early maturity, and relatively good drought resistance. We used 454 sequencing technology for transcriptom... Mungbean (Vigna radiata (L.) Wilczek) is a unique species in its ability to fix atmospheric nitrogen, with early maturity, and relatively good drought resistance. We used 454 sequencing technology for transcriptome sequencing. A total of 150 159 and 142 993 reads produced 5 254 and 6 374 large contigs (〉_500 bp) with an average length of 833 and 853 for Sunhwa and Jangan, respectively. Functional annotation to known sequences yielded 41.34% and 41.74% unigenes for Jangan and Sunhwa. A higher number of simple sequence repeat (SSR) motifs was identified in Jangan (1 630) compared with that of Sunhwa (1 334). A similar SSR distribution pattern was observed in both varieties. A total of 8 249 single nucleotide polymorphisms (SNPs) and indels with 2 098 high-confidence candidates were identified in the two mungbean varieties. The average distance between individual SNPs was -860 bp. Our report demonstrates the utility of transcriptomic data for implementing a functional annotation and development of genetic markers. We also provide large resource sequence data for mungbean improvement programs. 展开更多
关键词 Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through transcriptome analysis of Mungbean SNPS
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