Analysis of the potential biological value of pyruvate dehydrogenase E1 subunitβin human cancer

BACKGROUND The pyruvate dehydrogenase E1 subunitβ(PDHB)gene which regulates energy metabolism is located in mitochondria.However,few studies have elucidated the role and mechanism of PDHB in different cancers.AIM To comprehensive pan-cancer analysis of PDHB was performed based on bioinformatics approaches to explore its tumor diagnostic and prognostic value and tumor immune relevance in cancer.In vitro experiments were performed to examine the biological regulation of PDHB in liver cancer.METHODS Pan-cancer data related to PDHB were obtained from the Cancer Genome Atlas(TCGA)database.Analysis of the gene expression profiles of PDHB was based on TCGA and Genotype Tissue Expression Dataset databases.Cox regression analysis and Kaplan-Meier methods were used to assess the correlation between PDHB expression and survival prognosis in cancer patients.The correlation between PDHB and receiver operating characteristic diagnostic curve,clinicopathological staging,somatic mutation,tumor mutation burden(TMB),microsatellite instability(MSI),DNA methylation,and drug susceptibility in pan-cancer was also analyzed.Various algorithms were used to analyze the correlation between PDHB and immune cell infiltration and tumor chemotaxis environment,as well as the co-expression analysis of PDHB and immune checkpoint(ICP)genes.The expression and functional phenotype of PDHB in single tumor cells were studied by single-cell sequencing,and the functional enrichment analysis of PDHB-related genes was performed.The study also validated the level of mRNA or protein expression of PDHB in several cancers.Finally,in vitro experiments verified the regulatory effect of PDHB on the proliferation,migration,and invasion of liver cancer.RESULTS PDHB was significantly and differently expressed in most cancers.PDHB was significantly associated with prognosis in patients with a wide range of cancers,including kidney renal clear cell carcinoma,kidney renal papillary cell carcinoma,breast invasive carcinoma,and brain lower grade glioma.In some cancers,PDHB expression was clearly associated with gene mutations,clinicopathological stages,and expression of TMB,MSI,and ICP genes.The expression of PDHB was closely related to the infiltration of multiple immune cells in the immune microenvironment and the regulation of tumor chemotaxis environment.In addition,single-cell sequencing results showed that PDHB correlated with different biological phenotypes of multiple cancer single cells.This study further demonstrated that down-regulation of PDHB expression inhibited the proliferation,migration,and invasion functions of hepatoma cells.CONCLUSION As a member of pan-cancer,PDHB may be a novel cancer marker with potential value in diagnosing cancer,predicting prognosis,and in targeted therapy.

Genetic diversity of the S-type small subunit ribosomal RNA gene of Plasmodium knowlesi isolates from Sabah,Malaysian Borneo and Peninsular Malaysia

Objective:To determine the genetic diversity of Plasmodium(P.)knowlesi isolates from Sabah,Malaysian Borneo and Peninsular Malaysia,targeting the S-type SSU rRNA gene and including aspects of natural selection and haplotype.Methods:Thirty-nine blood samples infected with P.knowlesi were collected in Sabah,Malaysian Borneo and Peninsular Malaysia.The S-type SSU rRNA gene was amplified using polymerase chain reaction,cloned into a vector,and sequenced.The natural selection and haplotype of the S-type SSU rRNA gene sequences were determined using DnaSP v6 and illustrated using NETWORK v10.This study's 39 S-type SSU rRNA sequences and eight sequences from the Genbank database were subjected to phylogenetic analysis using MEGA 11.Results:Overall,the phylogenetic analysis showed no evidence of a geographical cluster of P.knowlesi isolates from different areas in Malaysia based on the S-type SSU rRNA gene sequences.The S-type SSU rRNA gene sequences were relatively conserved and with a purifying effect.Haplotype sharing of the S-type SSU rRNA gene was observed between the P.knowlesi isolates in Sabah,Malaysian Borneo,but not between Sabah,Malaysian Borneo and Peninsular Malaysia.Conclusions:This study suggests that the S-type SSU rRNA gene of P.knowlesi isolates in Sabah,Malaysian Borneo,and Peninsular Malaysia has fewer polymorphic sites,representing the conservation of the gene.These features make the S-type SSU rRNA gene suitable for comparative studies,such as determining the evolutionary relationships and common ancestry among P.knowlesi species.

Cognitive dysfunction in schizophrenia patients caused by downregulation of γ-aminobutyric acid receptor subunits

BACKGROUND The expression pattern of gamma aminobutyric acid(GABA)receptor subunits are commonly altered in patients with schizophrenia,which may lead to nerve excitation/inhibition problems,affecting cognition,emotion,and behavior.AIM To explore GABA receptor expression and its relationship with schizophrenia and to provide insights into more effective treatments.METHODS This case-control study enrolled 126 patients with schizophrenia treated at our hospital and 126 healthy volunteers who underwent physical examinations at our hospital during the same period.The expression levels of the GABA receptor subunits were detected using 1H-magnetic resonance spectroscopy.The recognized cognitive battery tool,the MATRICS Consensus Cognitive Battery,was used to evaluate the scores for various dimensions of cognitive function.The correlation between GABA receptor subunit downregulation and schizophrenia was also analyzed.RESULTS Significant differences in GABA receptor subunit levels were found between the case and control groups(P<0.05).A significant difference was also found between the case and control groups in terms of cognitive function measures,including attention/alertness and learning ability(P<0.05).Specifically,as the expression levels of GABRA1(α1 subunit gene),GABRB2(β2 subunit gene),GABRD(δsubunit),and GABRE(εsubunit)decreased,the severity of the patients’condition increased gradually,indicating a positive correlation between the downregulation of these 4 receptor subunits and schizophrenia(P<0.05).However,the expression levels of GABRA5(α5 subunit gene)and GABRA6(α6 subunit gene)showed no significant correlation with schizophrenia(P>0.05).CONCLUSION Downregulation of the GABA receptor subunits is positively correlated with schizophrenia.In other words,when GABA receptor subunits are downregulated in patients,cognitive impairment becomes more severe.

Cardioprotective Potential of Cymbopogon citratus Essential Oil against Isoproterenol-induced Cardiomyocyte Hypertrophy:Possible Involvement of NLRP3 Inflammasome and Oxidative Phosphorylation Complex Subunits

Objective:Cymbopogon citratus(DC.)Stapf is a medicinal and edible herb that is widely used for the treatment of gastric,nervous and hypertensive disorders.In this study,we investigated the cardioprotective effects and mechanisms of the essential oil,the main active ingredient of Cymbopogon citratus,on isoproterenol(ISO)-induced cardiomyocyte hypertrophy.Methods:The compositions of Cymbopogon citratus essential oil(CCEO)were determined by gas chromatography-mass spectrometry.Cardiomyocytes were pretreated with 16.9µg/L CCEO for 1 h followed by 10µmol/L ISO for 24 h.Cardiac hypertrophy-related indicators and NLRP3 inflammasome expression were evaluated.Subsequently,transcriptome sequencing(RNA-seq)and target verification were used to further explore the underlying mechanism.Results:Our results showed that the CCEO mainly included citronellal(45.66%),geraniol(23.32%),and citronellol(10.37%).CCEO inhibited ISO-induced increases in cell surface area and protein content,as well as the upregulation of fetal gene expression.Moreover,CCEO inhibited ISO-induced NLRP3 inflammasome expression,as evidenced by decreased lactate dehydrogenase content and downregulated mRNA levels of NLRP3,ASC,CASP1,GSDMD,and IL-1β,as well as reduced protein levels of NLRP3,ASC,pro-caspase-1,caspase-1(p20),GSDMD-FL,GSDMD-N,and pro-IL-1β.The RNA-seq results showed that CCEO inhibited the increase in the mRNA levels of 26 oxidative phosphorylation complex subunits in ISO-treated cardiomyocytes.Our further experiments confirmed that CCEO suppressed ISO-induced upregulation of mt-Nd1,Sdhd,mt-Cytb,Uqcrq,and mt-Atp6 but had no obvious effects on mt-Col expression.Conclusion:CCEO inhibits ISO-induced cardiomyocyte hypertrophy through the suppression of NLRP3 inflammasome expression and the regulation of several oxidative phosphorylation complex subunits.

F-box only protein 2 exacerbates non-alcoholic fatty liver disease by targeting the hydroxyl CoA dehydrogenase alpha subunit

BACKGROUND Non-alcoholic fatty liver disease(NAFLD)is a major health burden with an increasing global incidence.Unfortunately,the unavailability of knowledge underlying NAFLD pathogenesis inhibits effective preventive and therapeutic measures.AIM To explore the molecular mechanism of NAFLD.METHODS Whole genome sequencing(WGS)analysis was performed on liver tissues from patients with NAFLD(n=6)and patients with normal metabolic conditions(n=6)to identify the target genes.A NAFLD C57BL6/J mouse model induced by 16 wk of high-fat diet feeding and a hepatocyte-specific F-box only protein 2(FBXO2)overexpression mouse model were used for in vivo studies.Plasmid transfection,co-immunoprecipitation-based mass spectrometry assays,and ubiquitination in HepG2 cells and HEK293T cells were used for in vitro studies.RESULTS A total of 30982 genes were detected in WGS analysis,with 649 up-regulated and 178 down-regulated.Expression of FBXO2,an E3 ligase,was upregulated in the liver tissues of patients with NAFLD.Hepatocyte-specific FBXO2 overexpression facilitated NAFLD-associated phenotypes in mice.Overexpression of FBXO2 aggravated odium oleate(OA)-induced lipid accumulation in HepG2 cells,resulting in an abnormal expression of genes related to lipid metabolism,such as fatty acid synthase,peroxisome proliferator-activated receptor alpha,and so on.In contrast,knocking down FBXO2 in HepG2 cells significantly alleviated the OA-induced lipid accumulation and aberrant expression of lipid metabolism genes.The hydroxyl CoA dehydrogenase alpha subunit(HADHA),a protein involved in oxidative stress,was a target of FBXO2-mediated ubiquitination.FBXO2 directly bound to HADHA and facilitated its proteasomal degradation in HepG2 and HEK293T cells.Supplementation with HADHA alleviated lipid accumulation caused by FBXO2 overexpression in HepG2 cells.CONCLUSION FBXO2 exacerbates lipid accumulation by targeting HADHA and is a potential therapeutic target for NAFLD。

Role of brahma-related gene 1/brahma-associated factor subunits in neural stem/progenitor cells and related neural developmental disorders

Different fates of neural stem/progenitor cells(NSPCs)and their progeny are determined by the gene regulatory network,where a chromatin-remodeling complex affects synergy with other regulators.Here,we review recent research progress indicating that the BRG1/BRM-associated factor(BAF)complex plays an important role in NSPCs during neural development and neural developmental disorders.Several studies based on animal models have shown that mutations in the BAF complex may cause abnormal neural differentiation,which can also lead to various diseases in humans.We discussed BAF complex subunits and their main characteristics in NSPCs.With advances in studies of human pluripotent stem cells and the feasibility of driving their differentiation into NSPCs,we can now investigate the role of the BAF complex in regulating the balance between self-renewal and differentiation of NSPCs.Considering recent progress in these research areas,we suggest that three approaches should be used in investigations in the near future.Sequencing of whole human exome and genome-wide association studies suggest that mutations in the subunits of the BAF complex are related to neurodevelopmental disorders.More insight into the mechanism of BAF complex regulation in NSPCs during neural cell fate decisions and neurodevelopment may help in exploiting new methods for clinical applications.

Long non-coding RNA CDKN2B-AS1 promotes hepatocellular carcinoma progression via E2F transcription factor 1/G protein subunit alpha Z axis

BACKGROUND A series of long non-coding RNAs(lncRNAs)have been reported to play a crucial role in cancer biology.Some previous studies report that lncRNA CDKN2B-AS1 is involved in some human malignancies.However,its role in hepatocellular carcinoma(HCC)has not been fully deciphered.AIM To decipher the role of CDKN2B-AS1 in the progression of HCC.METHODS CDKN2B-AS1 expression in HCC was detected by quantitative real-time polymerase chain reaction.The malignant phenotypes of Li-7 and SNU-182 cells were detected by the CCK-8 method,EdU method,and flow cytometry,respectively.RNA immunoprecipitation was executed to confirm the interaction between CDKN2B-AS1 and E2F transcription factor 1(E2F1).Luciferase reporter assay and chromatin immunoprecipitation were performed to verify the binding of E2F1 to the promoter of G protein subunit alpha Z(GNAZ).E2F1 and GNAZ were detected by western blot in HCC cells.RESULTS In HCC tissues,CDKN2B-AS1 was upregulated.Depletion of CDKN2B-AS1 inhibited the proliferation of HCC cells,and the depletion of CDKN2B-AS1 also induced cell cycle arrest and apoptosis.CDKN2B-AS1 could interact with E2F1.Depletion of CDKN2B-AS1 inhibited the binding of E2F1 to the GNAZ promoter region.Overexpression of E2F1 reversed the biological effects of depletion of CDKN2B-AS1 on the malignant behaviors of HCC cells.CONCLUSION CDKN2B-AS1 recruits E2F1 to facilitate GNAZ transcription to promote HCC progression.

7^(OE)+8^(*)亚基对东北强筋小麦品种品质性状影响研究

小麦品质改良是东北春麦区强筋小麦育种的主要目标之一。Glu-B1位点7^(OE)+8^(*)亚基为超强筋小麦品种必备基因。为了明确该亚基在东北春麦区强筋小麦遗传背景下的品质遗传效应,本研究利用分子标记和选择回交相结合的手段,将7^(OE)+8^(*)亚基定向导入到强筋小麦品种龙麦26和龙麦35(Glu-B1位点均为7+9亚基)的遗传背景之中,对BC_(5)F_(1)、BC_(6)F_(1)群体和自交BC6F2鉴定获得的纯合品系进行7^(OE)+8^(*)亚基遗传效应评价。结果表明,在强筋小麦品种龙麦26(7+9)和龙麦35(7+9)遗传背景下转入7^(OE)+8^(*)亚基后,其干面筋、面筋指数、形成时间、稳定时间、断裂时间、拉伸面积、延伸性和最大抗延阻力等品质指标3年平均分别提高1.3%(P=0.82)和1.8%(P=0.49)、6.6%(P=0.59)和4.7%(P=0.37)、55.0%(P=0.24)和35.8%(P=0.56)、44.5%(P=0.43)和32.8%(P=0.73)、41.4%(P=0.31)和30.0%(P=0.66)、28.0%(P=0.05)和23.4%(P=0.37)、6.5%(P=0.47)和5.8%(P=0.42)、19.5%(P=0.31)和18.0%(P=0.38);Zeleny沉降值2年平均分别提高6.8%和11.4%。以上结果表明,在2个强筋小麦品种遗传背景下,Glu-B1位点转入7^(OE)+8^(*)亚基较7+9亚基对各项品质指标改良均存在正向效应,但提高幅度存在差异,对形成时间、稳定时间、断裂时间、最大抗延阻力、拉伸面积等衡量面筋质量的指标提高幅度更大,表明该亚基对面筋质量改良效应显著。综上所述,7^(OE)+8^(*)亚基可作为东北春麦区强筋小麦遗传背景下品质性状进一步改良的优选基因,为超强筋小麦育种的重要基因资源。

黔豆系列品种贮藏蛋白亚基组成及其含量分析

为明确黔豆系列大豆品种(品系)中大豆球蛋白组分及其各亚基组分含量,以促进营养或加工专用大豆新品种的选育与应用,本研究利用聚丙烯酰胺凝胶电泳(SDS-PAGE)对41份大豆品种(品系)的7S和11S球蛋白亚基组成、相对百分含量和11S/7S比值进行分析。结果表明,各品种间大豆蛋白及其亚基组分相对百分含量存在较大差异;41份供试品种(品系)的7S、11S球蛋白平均相对百分含量分别为26.93%、54.92%,变幅分别为15.58%~43.89%、37.10%~66.48%,变异系数分别为29.36%、13.57%;11S/7S值为0.85~4.05,平均值为2.28,变异系数为38.71%;7S蛋白的变异系数高于11S蛋白,7S蛋白β亚基的变异系数最大,11S蛋白B亚基的变异系数最大,表现出更丰富的遗传多样性;筛选出11S/7S值高于3的品种11份,其中高于4的品种2份;7S与11S球蛋白组分间存在极显著负相关;系统聚类将41份供试品种(品系)聚类为三类,第Ⅰ类群11S蛋白含量和11S/7S平均值最高,第Ⅱ类群A 4、A 1A 2亚基平均含量最高,第Ⅲ类群7S蛋白和A 3亚基的平均含量最高。

稳转hTERT绵羊睾丸细胞系的建立

羊睾丸原代细胞的体外培养是探究牛羊病毒致病机理的重要材料,实际科研工作中常受困于此类细胞传代性差、性质不稳定等缺点。外源性导入人端粒酶逆转录酶基因(hTERT)可以促使端粒酶活性的表达,延长细胞体外培养寿命是一种有效建立细胞永生化的方法。本试验中,通过RT-PCR获得hTERT。利用同源重组的技术,成功的构建了hTERT的真核表达质粒和慢病毒质粒。利用慢病毒表达系统,建立了稳转hTERT绵羊的睾丸细胞系。间接免疫荧光和蛋白免疫印迹试验研究结果均显示,hTERT基因已成功整合进入绵羊睾丸基因组中并稳定表达。第30代次的羊睾丸细胞生长较快,性状较稳定,表明已成功构建了具有永生化特性的绵羊睾丸细胞系,为草食动物病毒的相关研究提供重要的细胞模型。

磷脂酰肌醇-4,5-二磷酸肌醇-3-激酶对原发性肝癌TACE治疗反应的预测作用

目的探讨经导管动脉化疗栓塞术(TACE)治疗的原发性肝癌患者磷脂酰肌醇-4,5-二磷酸肌醇-3-激酶(PIK3CA)的表达及其与TACE治疗反应的相关性。方法从TCGA数据库下载425例肝癌患者PIK3CA的表达量。利用GSE104580数据集内TACE治疗敏感和不敏感患者癌组织PIK3CA表达量,分析两组基因表达差异,绘制ROC曲线分析TACE治疗敏感性与PIK3CA表达的相关性。从GSE14520数据集下载具有完整临床资料、接受TACE治疗的肝细胞癌27例,基于PIK3CA的表达量最佳截断值,分成PIK3CA高表达组和PIK3CA低表达组,比较两组患者的临床资料。应用“survminer”R包进行Kaplan-Meier生存分析。结果肝癌组织PIK3CA表达明显高于癌旁组织;TACE不敏感患者癌组织PIK3CA表达量高于TACE敏感患者,TACE治疗敏感性与PIK3CA表达相关性的ROC曲线下面积(AUC)为0.645;生存分析显示PIK3CA表达量越低,患者生存时间越长,且1、2、3年的AUC分别为0.765、0.713、0.633。结论PIK3CA对于肝细胞癌有一定的诊断价值,有可能作为TACE治疗敏感性的预测指标。

云南蚕区家蚕微孢子虫遗传多样性分析

家蚕微孢子虫(Nosema bombycis)是蚕业生产上一种重要病害——微粒子病的病原体。探讨家蚕微孢子虫种内的遗传多样性,可为云南蚕区家蚕微粒子病的防控提供参考依据。从云南省不同养蚕地区收集了感染微孢子虫的病蚕样品,分离纯化家蚕微孢子虫并提取基因组,克隆SSU rDNA(small subunit ribosomal DNA)和ITS(internal transcribed spacer)序列并进行生物信息学分析。结果发现,云南蚕区Nosema bombycis分离株SSU rDNA序列同源性高达99%以上,遗传距离小于0.006,它们在长度和多个位点存在差异,呈现不同程度的多态性;ITS遗传差异较为显著,序列中存在多碱基的插入或缺失、单碱基的转换和颠换。基于SSU rDNA和rDNA-ITS序列构建系统发生树,结果显示,云南蚕区家蚕微孢子虫分离株系间存在遗传分化,种群间亲缘关系与地理位置无直接联系。研究结果丰富了云南蚕区家蚕微孢子虫的种内遗传多样性。

引进美国小麦种质资源抗病性及品质性状鉴定

为了挖掘新的种质资源,本研究对引自美国的442份小麦材料对白粉病和条锈病的抗病性、蛋白含量以及高分子量麦谷蛋白(HMW-GS)亚基组成进行了鉴定分析。抗病性鉴定结果显示,153份材料抗白粉病,27份抗条锈病,6份兼抗两种病害。蛋白质含量达到GB/T 17892-1999《优质小麦强筋小麦》一等(粗蛋白质含量≥15.0%)的样品有143份。高分子量麦谷蛋白检测发现,供试材料共含18种HMW-GS亚基和100种不同亚基组合类型,其中N,7+9,5+10出现次数最多,优质亚基1、2*、7^(oe)、17+18、5+10的材料分别占总材料数的25.6%、5.2%、27.8%、7.7%和25.6%,含7^(oe),5+10亚基的有36份,含2*,5+10亚基的有1份,含2*,7^(oe)亚基的有7份。综合抗病性及品质分析结果显示,PI 17738等11份材料至少抗1种病害,且蛋白含量≥15.0%,湿面筋含量≥35.0%,同时含有稀有优质亚基。以上11份材料可作为我国优质、抗病小麦培育亲本,为我国小麦抗病和品质遗传改良提供优异基因源。

光照条件变化对蓝隐藻色素蛋白复合物表达含量的影响

前期研究发现蓝隐藻(Chroomonas placoidea)藻蓝蛋白PC645存在未报道过的β亚基,但其受光照条件的影响及表达情况不明。实验比较了6组不同光照条件下培养的蓝隐藻对数生长期细胞的色素组成变化及PC645亚基的表达差异。发现光照增加对叶绿素a/c-蛋白复合物影响不明显,但有利于PC645的积累;且影响PC645中两种β亚基的相对表达量,而对α亚基含量影响很小。1级12 h和24 h时β_(2)亚基相对含量最高,较低或过高强度的光照都不利于β_(2)的表达。说明PC645在蓝隐藻光适应机制中可能担负调节作用,β_(2)亚基的存在不仅影响隐藻藻胆蛋白的聚合形式,也与藻细胞的光能传递功能可调性相关。实验结果将为分析新亚基的功能,阐明隐藻特异的光合系统结构与机理提供依据。

Gabra3通过AKT/mTOR途径促进膀胱癌T24细胞侵袭和迁移

目的:探究γ-氨基丁酸受体亚基α-3(Gamma-aminobutyric acid receptor subunit alpha-3,Gabra3)基因对膀胱癌T24细胞凋亡、迁移和侵袭的作用及其机制。方法:TCGA数据库分析Gabra3基因在膀胱癌中的表达以及转移和生存的相关性。建立Gabra3过表达和Gabra3突变的T24细胞株,根据转染质粒不同,分为空白T24细胞(Control)、空pDONR223载体转染T24细胞(NC)、野生型Gabra3过表达T24细胞株(wt-Gabra3)、突变型Gabra3 T24细胞株(mut-Gabra3)。在回补实验中,分为转染突变型Gabra3 T24组(mut-Gabra3)、转染空pDONR223载体mut-Gabra3组(mut-Gabra3-NC)、转染野生型Gabra3过表达组(mut-Gabra3+wt-Gabra3)。用TUNEL染色检测T24细胞凋亡,细胞划痕和Transwell分别检测T24细胞迁移和侵袭,Western blot检测AKT/mTOR通路相关分子生物表达水平。结果:Gabra3基因在膀胱癌中显著高表达(P<0.05),生存曲线证实远处转移存在的患者生存期明显较短(P<0.05)。成功构建Gabra3过表达和突变的T24细胞株。与Control组相比,wt-Gabra3组细胞凋亡能力显著降低,迁移、侵袭能力显著增强(P<0.05),而mut-Gabra3组细胞凋亡显著增加,侵袭能力显著减弱(P<0.05);wt-Gabra3组细胞p-AKT、p-mTOR、p-4E-BP1、p-S6K蛋白表达均显示上凋(P<0.05),而mut-Gabra3组细胞上述蛋白无差异。在回补实验中,过表达wt-Gabra3的mut-Gabra3突变T24细胞凋亡能力受到抑制(P<0.05),迁移和侵袭能力显著增强(P<0.05),并且该组细胞AKT/mTOR通路相关分子显著激活(P<0.05)。结论:外源性的未编辑的Gabra3可以促进膀胱癌T24细胞的迁移、侵袭能力,并且可能与激活AKT/mTOR途径通路密切相关。

X连锁迟发性脊椎骨骺发育不良家系TRAPPC2基因缺失突变的高通量测序分析

目的·研究一个X连锁迟发性脊椎骨骺发育不良(spondyloepiphyseal dysplasia tarda,SEDT)家系的致病基因及突变类型。方法·提取一个SEDT家系6名成员外周血基因组DNA。应用Clearseq遗传性疾病试剂盒靶向捕获先证者基因组样本中与罕见遗传性疾病相关的致病区域,并进行高通量测序,过滤去除高频突变。采用外显子组隐马尔科夫模型(exome hidden Markov model,XHMM)分析拷贝数变异(copy number variant,CNV),并进一步对6名家系成员基因缺失片段的拷贝数进行实时定量PCR分析。结果·高通量测序分析结果显示,先证者X染色体存在2.5 kb缺失(chrX:13732385~13734927),该区域覆盖转运蛋白复合体亚单位2(transport protein particle complex subunit 2,TRAPPC2)基因的第4~6个外显子。定量PCR结果证实先证者及其表哥均存在该缺失,先证者母亲为杂合缺失,先证者父亲、姐姐和表型正常的舅舅拷贝数均正常。结论·TRAPPC2基因第4~6个外显子片段的缺失为SEDT的致病性突变;同时高通量测序分析中运用XHMM算法可检测到致病基因多个外显子的缺失。

S100钙结合蛋白β与α突触核蛋白与帕金森病患者抑郁及运动障碍的关系

目的研究帕金森病(PD)患者血清S100钙结合蛋白β(S100β)及α突触核蛋白(α-syn)水平与患者抑郁及运动障碍的关系。方法选择2022年1月至12月聊城市人民医院收治的PD患者194例,根据汉密尔顿抑郁量表评分分为非抑郁组102例(0~13分)及抑郁组92例(≥14分)。运动障碍采用Hoehn-Yahr(H-Y)分级及统一帕金森病评定量表Ⅲ(UPDRS-Ⅲ)进行评分,用多因素logistic回归分析PD患者抑郁的独立危险因素,用Spearman相关性分析血清S100β及α-syn水平与患者抑郁及运动障碍的关系。结果抑郁组体质量指数低于非抑郁组,H-Y分级、UPDRS-Ⅲ评分、S100β、α-syn均高于非抑郁组,差异有统计学意义(P<0.05,P<0.01)。多因素logistic回归分析显示,H-Y分级、UPDRS-Ⅲ评分、S100β、α-syn为PD患者抑郁的独立危险因素(P<0.05)。Spearman相关性分析显示,PD患者S100β水平与H-Y分级、UPDRS-Ⅲ评分呈正相关(r=0.698,P=0.005;r=0.637,P=0.011);α-syn水平与H-Y分级、UPDRS-Ⅲ评分呈正相关(r=0.654,P=0.021;r=0.611,P=0.035)。ROC曲线显示,S100β、α-syn诊断PD患者抑郁的截断值分别为486.65μg/L、3894.27 ng/L,曲线下面积分别为0.889(95%CI:0.812~0.923)、0.761(95%CI:0.714~0.828),S100β曲线下面积显著优于α-syn(P<0.05)。结论PD患者血清S100β、α-syn水平与其抑郁发生及运动功能障碍密切相关。

polo样激酶1、RNA聚合酶Ⅱ亚基A在人脑胶质瘤中的表达及与预后的关系

目的 探讨polo样激酶1(PLK1)、RNA聚合酶Ⅱ亚基A(POLR2A)在人脑胶质瘤(BG)中的表达及与预后的关系。方法 选取86例BG患者作为观察组,另选取30例非肿瘤脑疾病患者作为参照组,收集观察组患者的BG组织和参照组患者的非肿瘤脑组织。比较两组患者PLK1、POLR2A表达情况和不同临床特征BG患者的BG组织中PLK1、POLR2A的阳性表达情况;比较不同PLK1、POLR2A表达情况BG患者的生存情况;采用Cox回归模型分析BG患者预后的影响因素。结果 观察组患者PLK1、POLR2A阳性表达率分别高于参照组,差异均有统计学意义(P﹤0.05)。低分化BG患者的BG组织中PLK1、POLR2A阳性表达率均高于中高分化患者,差异均有统计学意义(P﹤0.05)。PLK1、POLR2A阳性表达患者的中位生存时间均明显短于PLK1、POLR2A阴性表达患者,差异均有统计学意义(P﹤0.01)。Cox多因素回归分析结果显示,低分化、PLK1阳性表达、POLR2A阳性表达均为BG患者预后的独立危险因素(P﹤0.05)。结论 BG患者PLK1、POLR2A呈高表达,PLK1、POLR2A高表达BG患者中位生存时间缩短,低分化、PLK1阳性表达、POLR2A阳性表达均为BG患者预后的独立危险因素。

褐飞虱G蛋白β亚基基因的功能分析

【目的】本研究旨在鉴定褐飞虱Nilaparvata lugens G蛋白β亚基基因(NlGβ)并分析其功能,以期为基于RNAi技术防治褐飞虱提供潜在的新靶标基因。【方法】利用PCR克隆并验证褐飞虱NlGβ的编码序列(coding sequence,CDS)并进行生物信息学分析;基于褐飞虱不同发育阶段(卵、1-5龄若虫和雌雄成虫)和成虫不同组织(头、足、肠道、表皮、脂肪体、雌性生殖系统和雄性生殖系统)转录组表达谱分析NlGβ的时空表达模式;通过对2和5龄褐飞虱若虫进行显微注射dsRNA沉默NlGβ,观测个体和雌性生殖系统表型,统计存活率、单雌产卵量和卵孵化率,利用透射电子显微镜技术观察侧输卵管膨大区。【结果】褐飞虱NlGβ(GenBank登录号:XP_022200908.1)的CDS长948 bp,NlGβ蛋白包含7个WD40结构域和4个WD_REPEATS_1基序,是一个较为保守的蛋白,除了直翅目昆虫外,来源于其他昆虫目中的NlGβ同源蛋白能很好地聚集在同一簇进化分支上。NlGβ的表达量在1-3龄若虫期呈现周期性变化,在5龄雌若虫和雌成虫中的表达量高于5龄雄若虫和雄成虫中的;NlGβ在成虫不同组织中都表达,但在脂肪体中表达量最高,在雌性生殖系统中的表达量高于雄性生殖系统中的。沉默褐飞虱2龄若虫NlGβ,出现蜕皮困难的现象,导致存活率较ds GFP对照组显著降低;沉默褐飞虱5龄若虫NlGβ,雌成虫腹部异常膨大,卵巢发育畸形,单雌产卵量较对照组显著下降,卵无法孵化,侧输卵管膨大区内分泌物增加,上皮细胞发生降解。【结论】NlGβ与褐飞虱的生长发育和雌虫的繁殖密切相关。

铜绿假单胞菌oprI基因DNA疫苗及其重组亚单位疫苗免疫效果的评估

为评估铜绿假单胞菌opr I基因DNA疫苗和重组亚单位疫苗对小鼠的免疫效果,本实验将铜绿假单胞菌外膜蛋白编码基因opr I克隆至真核表达载体p CAGGS-HA中构建重组质粒p CAGGS-opr I,经酶切鉴定正确后获得DNA疫苗。同时将opr I基因克隆至原核表达载体p ET32a中构建重组质粒p ET32a-oprI,经酶切鉴定正确后转入大肠杆菌,经IPTG诱导重组Opr I蛋白(rOprI)的表达,采用亲和层析法纯化后以SDS-PAGE检测,结果显示正确表达了r Opr I,且获得了其纯化蛋白,利用其制备重组亚单位疫苗。分别以DNA疫苗和重组亚单位疫苗免疫BALB/c小鼠,并以铜绿假单胞菌的灭活疫苗和外膜蛋白疫苗为对照,采用间接ELISA法检测免疫后不同时间小鼠血清中的抗体水平和血清中IFN-γ、IL-2和IL-4的含量;初免42 d后以铜绿假单胞菌(1.25×109 cfu/mL,100μL/只)对各组小鼠进行攻毒试验,通过测定各疫苗对小鼠的保护率,评估疫苗的保护效果。结果显示,各疫苗诱导的免疫小鼠血清抗体水平和细胞因子含量均显著高于阴性对照组(P<0.05),且重组亚单位疫苗诱导小鼠的抗体水平和IL-4含量均显著高于DNA疫苗(P<0.05),而IFN-γ和IL-2含量则与DNA疫苗无显著差异(P>0.05)。小鼠攻毒试验结果显示,DNA疫苗组、重组亚单位疫苗组、外膜蛋白疫苗组和灭活疫苗组小鼠获得的免疫保护率分别为45%、55%、70%和95%。上述结果首次表明以铜绿假单胞菌opr I基因制备的DNA疫苗和r Opr I重组亚单位疫苗均可诱导小鼠产生体液和细胞免疫应答,并可为小鼠提供对铜绿假单胞菌攻毒的免疫保护效果,但二者的免疫效果还需进一步提高。本研究为铜绿假单胞菌疫苗的研究提供了参考依据。