Effect of land use on soil nematode community composition and co-occurrence network relationship

Land use influences soil biota community composition and diversity,and then belowground ecosystem processes and functions.To characterize the effect of land use on soil biota,soil nematode communities in crop land,forest land and fallow land were investigated in six regions of northern China.Generic richness,diversity,abundance and biomass of soil nematodes was the lowest in crop land.The richness and diversity of soil nematodes were 28.8and 15.1%higher in fallow land than in crop land,respectively.No significant differences in soil nematode indices were found between forest land and fallow land,but their network keystone genera composition was different.Among the keystone genera,50%of forest land genera were omnivores-predators and 36%of fallow land genera were bacterivores.The proportion of fungivores in forest land was 20.8%lower than in fallow land.The network complexity and the stability were lower in crop land than forest land and fallow land.Soil pH,NH_(4)^(+)-N and NO_(3)^(–)-N were the major factors influencing the soil nematode community in crop land while soil organic carbon and moisture were the major factors in forest land.Soil nematode communities in crop land influenced by artificial management practices were more dependent on the soil environment than communities in forest land and fallow land.Land use induced soil environment variation and altered network relationships by influencing trophic group proportions among keystone nematode genera.

Language clustering with word co-occurrence networks based on parallel texts

This study investigates the feasibility of applying complex networks to fine-grained language classification and of employing word co-occurrence networks based on parallel texts as a substitute for syntactic dependency networks in complex-network-based language classification.14 word co-occurrence networks were constructed based on parallel texts of 12 Slavic languages and 2 non-Slavic languages,respectively.With appropriate combinations of major parameters of these networks,cluster analysis was able to distinguish the Slavic languages from the non-Slavic and correctly group the Slavic languages into their respective sub-branches.Moreover,the clustering could also capture the genetic relationships of some of these Slavic languages within their sub-branches.The results have shown that word co-occurrence networks based on parallel texts are applicable to fine-grained language classification and they constitute a more convenient substitute for syntactic dependency networks in complex-network-based language classification.

A Metric Approach to Hot Topics in Biomedicine via Keyword Co-occurrence

Purpose:To reveal the research hotpots and relationship among three research hot topics in b iomedicine,namely CRISPR,iPS(induced Pluripotent Stem)cell and Synthetic biology.Design/methodology/approach:We set up their keyword co-occurrence networks with using three indicators and information visualization for metric analysis.Findings:The results reveal the main research hotspots in the three topics are different,but the overlapping keywords in the three topics indicate that they are mutually integrated and interacted each other.Research limitations:All analyses use keywords,without any other forms.Practical implications:We try to find the information distribution and structure of these three hot topics for revealing their research status and interactions,and for promoting biomedical developments.Originality/value:We chose the core keywords in three research hot topics in biomedicine by using h-index.

AGGREGATE IMAGE BASED TEXTURE IDENTIFICATION USING GRAY LEVEL CO-OCCURRENCE PROBABILITY AND BP NEURAL NETWORK

Classifying the texture of granules in 2D images has aroused manifold research atten-tion for its technical challenges in image processing areas.This letter presents an aggregate texture identification approach by jointly using Gray Level Co-occurrence Probability(GLCP) and BP neural network techniques.First, up to 8 GLCP-associated texture feature parameters are defined and computed, and these consequent parameters next serve as the inputs feeding to the BP neural network to calculate the similarity to any of given aggregate texture type.A finite number of aggregate images of 3 kinds, with each containing specific type of mineral particles, are put to the identification test, experimentally proving the feasibility and robustness of the proposed method.

Analysis of the Features of Network Words

The information society makes people's lives gradually enter a digital state for living. And the popularity of the Internet has led to the unique phenomenon of network words. What impact will network and the combination of language bring about? This article will explore the relation between the phenomenon of network words and social context from the angle of social linguistic through the analysis of network words and grammatical features.

Inversion tillage with straw incorporation affects the patterns of soil microbial co-occurrence and multi-nutrient cycling in a Hapli-Udic Cambisol

Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.

Assembly and co-occurrence patterns of rare and abundant bacterial sub-communities in rice rhizosphere soil under short-term nitrogen deep placement

Nitrogen(N)deep placement has been found to reduce N leaching and increase N use efficiency in paddy fields.However,relatively little is known how bacterial consortia,especially abundant and rare taxa,respond to N deep placement,which is critical for understanding the biodiversity and function of agricultural ecosystem.In this study,lllumina sequencing and ecological models were conducted to examine the diversity patterns and underlying assembly mechanisms of abundant and rare taxa in rice rhizosphere soil under different N fertilization regimes at four rice growth stages in paddy fields.The results showed that abundant and rare bacteria had distinct distribution patterns in rhizosphere samples.Abundant bacteria showed ubiquitous distribution;while rare taxa exhibited uneven distribution across all samples.Stochastic processes dominated community assembly of both abundant and rare bacteria,with dispersal limitation playing a more vital role in abundant bacteria,and undominated processes playing a more important role in rare bacteria.The N deep placement was associated with a greater influence of dispersal limitation than the broadcast N fertilizer(BN)and no N fertilizer(NN)treatments in abundant and rare taxa of rhizosphere soil;while greater contributions from homogenizing dispersal were observed for BN and NN in rare taxa.Network analysis indicated that abundant taxa with closer relationships were usually more likely to occupy the central position of the network than rare taxa.Nevertheless,most of the keystone species were rare taxa and might have played essential roles in maintaining the network stability.Overall,these findings highlighted that the ecological mechanisms and co-occurrence patterns of abundant and rare bacteria in rhizosphere soil under N deep placement.

Temporal characteristics of algae-denitrifying bacteria co-occurrence patterns and denitrifier assembly in epiphytic biofilms on submerged macrophytes in Caohai Lake,SW China

Denitrifying bacteria in epiphytic biofilms play a crucial role in nitrogen cycle in aquatic habitats.However,little is known about the connection between algae and denitrifying bacteria and their assembly processes in epiphytic biofilms.Epiphytic biofilms were collected from submerged macrophytes(Patamogeton lucens and Najas marina L.)in the Caohai Lake,Guizhou,SW China,from July to November 2020 to:(1)investigate the impact of abiotic and biotic variables on denitrifying bacterial communities;(2)investigate the temporal variation of the algae-denitrifying bacteria co-occurrence networks;and(3)determine the contribution of deterministic and stochastic processes to the formation of denitrifying bacterial communities.Abiotic and biotic factors influenced the variation in the denitrifying bacterial community,as shown in the Mantel test.The co-occurrence network analysis unveiled intricate interactions among algae to denitrifying bacteria.Denitrifying bacterial community co-occurrence network complexity(larger average degrees representing stronger network complexity)increased continuously from July to September and decreased in October before increasing in November.The co-occurrence network complexity of the algae and nirS-encoding denitrifying bacteria tended to increase from July to November.The co-occurrence network complexity of the algal and denitrifying bacterial communities was modified by ammonia nitrogen(NH_(4)^(+)-N)and total phosphorus(TP),pH,and water temperature(WT),according to the ordinary least-squares(OLS)model.The modified stochasticity ratio(MST)results reveal that deterministic selection dominated the assembly of denitrifying bacterial communities.The influence of environmental variables to denitrifying bacterial communities,as well as characteristics of algal-bacterial co-occurrence networks and the assembly process of denitrifying bacterial communities,were discovered in epiphytic biofilms in this study.The findings could aid in the appropriate understanding and use of epiphytic biofilms denitrification function,as well as the enhancement of water quality.

Predicting Complex Word Emotions and Topics through a Hierarchical Bayesian Network

In this paper, we provide a Word Emotion Topic （WET） model to predict the complex word e- motion information from text, and discover the dis- trbution of emotions among different topics. A complex emotion is defined as the combination of one or more singular emotions from following 8 basic emotion categories： joy, love, expectation, sur- prise, anxiety, sorrow, anger and hate. We use a hi- erarchical Bayesian network to model the emotions and topics in the text. Both the complex emotions and topics are drawn from raw texts, without con- sidering any complicated language features. Our ex- periment shows promising results of word emotion prediction, which outperforms the traditional parsing methods such as the Hidden Markov Model and the Conditional Random Fields（CRFs） on raw text. We also explore the topic distribution by examining the emotion topic variation in an emotion topic diagram.

Insights into microbiota community dynamics and flavor development mechanism during golden pomfret(Trachinotus ovatus)fermentation based on single-molecule real-time sequencing and molecular networking analysis

Popular fermented golden pomfret(Trachinotus ovatus)is prepared via spontaneous fermentation;however,the mechanisms underlying the regulation of its flavor development remain unclear.This study shows the roles of the complex microbiota and the dynamic changes in microbial community and flavor compounds during fish fermentation.Single-molecule real-time sequencing and molecular networking analysis revealed the correlations among different microbial genera and the relationships between microbial taxa and volatile compounds.Mechanisms underlying flavor development were also elucidated via KEGG based functional annotations.Clostridium,Shewanella,and Staphylococcus were the dominant microbial genera.Forty-nine volatile compounds were detected in the fermented fish samples,with thirteen identified as characteristic volatile compounds(ROAV>1).Volatile profiles resulted from the interactions among the microorganisms and derived enzymes,with the main metabolic pathways being amino acid biosynthesis/metabolism,carbon metabolism,and glycolysis/gluconeogenesis.This study demonstrated the approaches for distinguishing key microbiota associated with volatile compounds and monitoring the industrial production of high-quality fermented fish products.

Environment drives the co-occurrence of bacteria and microeukaryotes in a typical subtropical bay

The co-occurrence of bacteria and microeukaryote species is a ubiquitous ecological phenomenon,but there is limited cross-domain research in aquatic environments.We conducted a network statistical analysis and visualization of microbial cross-domain co-occurrence patterns based on DNA sampling of a typical subtropical bay during four seasons,using high-throughput sequencing of both 18S rRNA and 16S rRNA genes.First,we found obvious relationships between network stability and network complexity indices.For example,increased cooperation and modularity were found to weaken the stability of cross-domain networks.Secondly,we found that bacterial operational taxonomic units(OTUs)were the most important contributors to network complexity and stability as they occupied more nodes,constituted more keystone OTUs,built more connections,more importantly,ignoring bacteria led to greater variation in network robustness.Gammaproteobacteria,Alphaproteobacteria,Bacteroidetes,and Actinobacteria were the most ecologically important groups.Finally,we found that the environmental drivers most associated with cross-domain networks varied across seasons(in detail,the network in January was primarily constrained by temperature and salinity,the network in April was primarily constrained by depth and temperature,the network in July was mainly affected by depth,temperature,and salinity,depth was the most important factor affecting the network in October)and that environmental influence was stronger on bacteria than on microeukaryotes.

Community composition,co-occurrence,and environmental drivers of bacterioplankton community in surface and 50-m water layers in the subarctic North Pacific

The Western Subarctic Gyre(WSG)is one of the two gyre-systems in the subarctic North Pacific known for high nutrient and low-chlorophyll waters.However,the bacterioplankton in marine water of this area,either in terms of the taxonomic composition or functional structure,remains relatively unexplored.A total of 22 sampling sites from two water layers(surface water,SW and 50-m layer water,FW)were collected in this area.The physiochemical parameters of waters,Synechococcus,and bacterial density,as well as the bacterioplankton community composition and distribution pattern,were analyzed.The nutrient concentrations of DIN,DIP,and DSi,Chl-a concentration,and the average abundance of heterobacteria in FW were higher than those in SW.However,temperature and the average abundance of Synechococcus and pico-eukaryotes were higher in SW.A total of 3269 OTUs were assigned,and 2123OTUs were commonly shared;moreover,similar alpha diversity patterns were observed in both SW and FW.The bacterioplankton community showed significantly obvious correlation with salinity,DIP,DIN,and Chl a in both SW and FW.Proteobacteria,Cyanobacteria,Bacteroidota,Actinobacteriota,and Firmicutes were the main phyla while Synechococcus_CC9902,Psychrobacter,and Sulfitobacter were the dominant genera in each sampling site.Most correlations that happened between the OTUs in the cooccurrence network were positive and inter-module.Higher edges and graph density were found in SW,indicating that more correlations occurred,and the community was more complex in SW.This study provided novel knowledge on the bacterioplankton community structure and the correlation characteristics in WSG.

Chinese word sense disambiguation based on neural networks

The input of a network is the key problem for Chinese word sense disambiguation utilizing the neural network. This paper presents an input model of the neural network that calculates the mutual information between contextual words and the ambiguous word by using statistical methodology and taking the contextual words of a certain number beside the ambiguous word according to (-M,+N).The experiment adopts triple-layer BP Neural Network model and proves how the size of a training set and the value of Mand Naffect the performance of the Neural Network Model. The experimental objects are six pseudowords owning three word-senses constructed according to certain principles. The tested accuracy of our approach on a closed-corpus reaches 90.31%, and 89.62% on an open-corpus. The experiment proves that the Neural Network Model has a good performance on Word Sense Disambiguation.

Tuning Recurrent Neural Networks for Recognizing Handwritten Arabic Words

Artificial neural networks have the abilities to learn by example and are capable of solving problems that are hard to solve using ordinary rule-based programming. They have many design parameters that affect their performance such as the number and sizes of the hidden layers. Large sizes are slow and small sizes are generally not accurate. Tuning the neural network size is a hard task because the design space is often large and training is often a long process. We use design of experiments techniques to tune the recurrent neural network used in an Arabic handwriting recognition system. We show that best results are achieved with three hidden layers and two subsampling layers. To tune the sizes of these five layers, we use fractional factorial experiment design to limit the number of experiments to a feasible number. Moreover, we replicate the experiment configuration multiple times to overcome the randomness in the training process. The accuracy and time measurements are analyzed and modeled. The two models are then used to locate network sizes that are on the Pareto optimal frontier. The approach described in this paper reduces the label error from 26.2% to 19.8%.

A Fuzzy Neural Network Model of Linguistic Dynamic Systems Based on Computing with Words

Linguistic dynamic systems(LDS)are dynamic processes involving computing with words(CW)for modeling and analysis of complex systems.In this paper,a fuzzy neural network(FNN)structure of LDS was proposed.In addition,an improved nonlinear particle swarm optimization was employed for training FNN.The experiment results on logistics formulation demonstrates the feasibility and the efficiency of this FNN model.

Structures and dynamics of scientific knowledge networks:An empirical analysis based on a co-word network

Co-word networks are constructed with author-provided keywords in academic publications and their relations of co-occurrence.As special form of scientific knowledge networks,they represent the cognitive structure of scientific literature.This paper analyzes the complex structure of a co-word network based on 8,190 author-provided keywords extracted from 3,651 papers in five Chinese core journals in the field of management science.Small-world and scale-free phenomena are found in this network.A large-scale co-word network graph,which consists of one major giant component and many small isolated components,has been generated with the GUESS software.The dynamic growth of keywords and keyword co-occurrence relationships are described with four new informetrics measures.The results indicate that existing concepts always serve as the intellectual base of new ideas as represented by keywords.

On the English translation of the network new and hot words from the perspective of lexicology

From the initial sparks of fire to the present independent school, the network language has become the research object of many language scholars. With the rapid development of the lntemet, a large number of the network new words and hot words have a rapid impact on people＇s social communication and their life. This kind of the vocabularies truly reflects the different life attitudes and cultures mainly with the words as the carrier, and then shows the network cultures, mentalities and life styles of the Chinese people, and especially the young people in different stages. From the perspective of the English vocabulary, take the reverse into consideration of the reaction of the network new and hot words on the present situations of the life of young people, the latest social phenomena and the importance and particularity of the new things, and we can find out the roles and values of the network new and hot words in the intercultural communication.

On C-E Translation of Network Hot Words from the Perspective of Translator's Subjectivity

As a special kind of vocabularies originated from the network language,the network hot words are the manifcstation of the diversification of thec nctwork cra as well as of people's social consciousncss,To improve the translation quality of Chinese network hot words is not only conducive to promoting the Chinese network culure,but also an important way for foreigner to better understand China.This paper starts from the cases of network hot words translation,making the specific analysis of those words and the relationship among the translator,original writer and target readers.It also analyzes the factors that limit the translator's subjectivity and the translation skills of the network hot words,aiming at further clarifying the translator's subjectivity in the translation of network hot words.Through this research,this paper expectes to have a positive impact on the translation of Chinese network hot words and the promotion of Chinese culture.

融合Word2Vec词嵌入的多核卷积神经网络音乐歌词多情感分类方法

目前,音乐歌词情感分类大多以二标签极性情感为主,多情感标签分类较少,并且对于情感性不确定的歌词而言,得到的分类性能不高。为了解决多情感标签研究分类的不足,以及提高分类准确性,提出一种利用Word2Vec词嵌入技术,并使用多核卷积神经网络作为分类器的音乐歌词多情感分类方法。该方法首先结合音乐歌词文本,进行数据预处理和可视化分析;其次利用Word2Vec词嵌入提取歌词局部特征,构建特征情感向量,挖掘歌词中情感信息,将歌词转化为更利于分类器模型输入的词向量;最后在分类器中,选用卷积神经网络模型,并在此基础上采用不同高度卷积核的方式构建新模型以此得到多情感分类。结果表明:音乐歌词多情感分类的结果达到94.26%,与传统CNN相比,分类精确率提高了6.86%,取得了良好性能。

浙江省科技创新政策文本分析:2000—2022

通过对浙江省2000—2022年颁布的科技创新政策进行文本分析,探讨了其在不同阶段的特征和政策关注重点。利用词频分析和共词网络分析方法,研究发现浙江省科技创新政策的关注重点已从最初的单一科技项目和企业合作,逐步向更加多元化的科技创新、产业发展、法规建设、人才培养等方面转变,其科技创新政策日渐成熟,更强调构建完善的科技创新生态系统。基于分析结果,提出加强政策执行效果监督评估、进一步细化政策内容、加强政策宣传解读、优化政策体系等建议,旨在推动浙江省科技创新事业持续健康发展。