The aim is to develop a liquid chip technique to detect Taura syndrome virus( TSV) and yellow head disease virus( YHDV) on Penaeus orientalis simultaneously. The CP2 gene of TSV and N gene of YHDV in Gen Bank was anal...The aim is to develop a liquid chip technique to detect Taura syndrome virus( TSV) and yellow head disease virus( YHDV) on Penaeus orientalis simultaneously. The CP2 gene of TSV and N gene of YHDV in Gen Bank was analysed by using the software DNAStar 7. 0 to design the TSV-and YHDV-specific primers. The primers were labeled with biotin and subjected to amination modification. They were then coupled with fluorescence-coded microspheres and then used for hybridization with RT- PCR products of TSV and YHDV. The liquid chip detection technique for detection of TSV and YHDV was established by using BD FACSArray to detect fluorescence signal in the reaction system. This assay system had a high sensitivity to TSV and YHDV,with the detection of limit of 100 pg. Moreover,the assay was specific for the detection of TSV,YHDV and was not susceptible to cross with other viruses,including white spot syndrome virus( WSSV),spring viremia of carp virus( SVCV),infectious haematopoietic necrosis virus( IHNV). In conclusion,the liquid chip assay technique established in this study is highly sensitive and specific to TSV and YHDV detection. Moreover,it provides a novel,convenient and rapid approach for the detection of TSV and YHDV.展开更多
对2012—2013年从河北、福建和广东3个对虾养殖场采集的12份发生疑似早期死亡综合征/急性肝胰腺坏死综合征(EMS/AHPNS)的样品,采用组织病理学方法、套式RT-PCR检测方法以及快速灵敏检测试剂盒进行了检测。三地来源的养殖对虾样品症状均...对2012—2013年从河北、福建和广东3个对虾养殖场采集的12份发生疑似早期死亡综合征/急性肝胰腺坏死综合征(EMS/AHPNS)的样品,采用组织病理学方法、套式RT-PCR检测方法以及快速灵敏检测试剂盒进行了检测。三地来源的养殖对虾样品症状均表现为肝胰腺颜色变淡,部分出现萎缩,空肠空胃,腹节肌肉略微白浊;组织病理切片结果表明,患病对虾肝胰腺血细胞浸润,肝胰腺盲管上皮细胞脱落,继发性细菌感染,淋巴器官和血淋巴细胞内存在核固缩、破裂和细胞质包涵体。按世界动物卫生组织(OIE)手册的套式RT-PCR方法检测,结果显示,黄头病毒(Yellow head virus,YHV)目的产物的阳性样品检出率为66.7%,该方法对这些样品的灵敏度可能很低。目的产物测序后经NCBI Blast,与已报道的YHV相似性为76.5%—89%;系统发育树显示这3个来源的样品位于同一个分支,与已知的YHV/鳃联病毒(gill-associated virus,GAV)株均不相同,其亲缘关系与YHV较近,而与GAV较远。用新研发的YHV快速高灵敏检测试剂盒检测,结果表明,所有样品均为YHV强阳性。以上表明患AHPNS的养殖对虾中存在一种YHV的新株型的感染,这也是我国首次检测到YHV的感染。展开更多
依据对虾黄头病毒（Yellow head virus,YHV）的非结构蛋白N基因序列,设计特异的锁式探针（Padlock probe,PLP）、检测探针及引物,建立YHV超分支滚环扩增（Hyper-branched rolling circle amplification,HRCA）检测试纸。灵敏度实验显示,...依据对虾黄头病毒（Yellow head virus,YHV）的非结构蛋白N基因序列,设计特异的锁式探针（Padlock probe,PLP）、检测探针及引物,建立YHV超分支滚环扩增（Hyper-branched rolling circle amplification,HRCA）检测试纸。灵敏度实验显示,YHV HRCA检测试纸能检测出的最低模板量为101拷贝,是RT-PCR灵敏度的100倍。特异性实验结果表明,该试纸能够特异性地对YHV进行检测。利用该检测试纸对进出口80批次虾样本进行检测,并将检测结果与常规RT-PCR相比较,结果显示,YHV HRCA检测试纸灵敏度方面优于常规RT-PCR方法,且操作简便、结果直观易读。展开更多
为查明黄头病毒(Yellow Head Virus,YHV)在我国的存在和变异情况,本研究采用世界动物卫生组织(OIE)《水生动物诊断手册》中YHV套式RT-PCR检测方法对2012–2014年采集的299份样品进行了YHV监测,并对部分YHV阳性样品基因进行了克隆测序及...为查明黄头病毒(Yellow Head Virus,YHV)在我国的存在和变异情况,本研究采用世界动物卫生组织(OIE)《水生动物诊断手册》中YHV套式RT-PCR检测方法对2012–2014年采集的299份样品进行了YHV监测,并对部分YHV阳性样品基因进行了克隆测序及系统发育分析。流行病学调查显示,299份样品中YHV的阳性率为11%,我国养殖的中国明对虾、凡纳滨对虾、日本囊对虾以及罗氏沼虾的部分样品中均检出了YHV,中国明对虾和罗氏沼虾是本次调查中新发现的YHV自然宿主,而且YHV在中国明对虾中的检出率最高。对6份较强阳性样品YHV基因组ORF1b内1002 bp的分型片段进行克隆测序和序列分析,序列比对结果显示,阳性样品的YHV与国外报道的YHV的6个基因型相似度为81.0%–90.5%;系统发育分析显示,6份阳性样品归于同一分支,但与已知YHV的6个基因型均不在同一分支内,其与YHV基因1型(YHV-1)亲缘关系较近。对阳性样品YHV基因组ORF3内编码gp116蛋白的一段序列进行克隆测序,得出其序列长度为509 bp,与YHV-1a的545 bp、YHV-1b的383 bp和YHV-2(即鳃联病毒GAV)的476 bp均不同;依据该片段构建的系统发育树显示,6份阳性样品归于同一分支,与YHV已知的6个基因型不同,与YHV-1亲缘关系较近,且与YHV-1a相似度大于YHV-1b。对其中两份样品的ORF2序列进行比对显示,两份样品序列相似性为99.8%,蛋白序列完全相同,与YHV-1的序列相似度为85.9%,与YHV-2相似性为80.9%。样品调查结果对增补YHV的宿主范围有重要意义;YHV核酸检测和序列比对结果表明,感染我国养殖对虾的YHV为一种新的致病株型。展开更多
基金Supported by Science and Technology Project of General Administration of Quality Supervision,Inspection and Quarantine of the People's Republic of China(2012IK018)Special Fund for Scientific Research in the Public Welfare(201210055-4)
文摘The aim is to develop a liquid chip technique to detect Taura syndrome virus( TSV) and yellow head disease virus( YHDV) on Penaeus orientalis simultaneously. The CP2 gene of TSV and N gene of YHDV in Gen Bank was analysed by using the software DNAStar 7. 0 to design the TSV-and YHDV-specific primers. The primers were labeled with biotin and subjected to amination modification. They were then coupled with fluorescence-coded microspheres and then used for hybridization with RT- PCR products of TSV and YHDV. The liquid chip detection technique for detection of TSV and YHDV was established by using BD FACSArray to detect fluorescence signal in the reaction system. This assay system had a high sensitivity to TSV and YHDV,with the detection of limit of 100 pg. Moreover,the assay was specific for the detection of TSV,YHDV and was not susceptible to cross with other viruses,including white spot syndrome virus( WSSV),spring viremia of carp virus( SVCV),infectious haematopoietic necrosis virus( IHNV). In conclusion,the liquid chip assay technique established in this study is highly sensitive and specific to TSV and YHDV detection. Moreover,it provides a novel,convenient and rapid approach for the detection of TSV and YHDV.
文摘对2012—2013年从河北、福建和广东3个对虾养殖场采集的12份发生疑似早期死亡综合征/急性肝胰腺坏死综合征(EMS/AHPNS)的样品,采用组织病理学方法、套式RT-PCR检测方法以及快速灵敏检测试剂盒进行了检测。三地来源的养殖对虾样品症状均表现为肝胰腺颜色变淡,部分出现萎缩,空肠空胃,腹节肌肉略微白浊;组织病理切片结果表明,患病对虾肝胰腺血细胞浸润,肝胰腺盲管上皮细胞脱落,继发性细菌感染,淋巴器官和血淋巴细胞内存在核固缩、破裂和细胞质包涵体。按世界动物卫生组织(OIE)手册的套式RT-PCR方法检测,结果显示,黄头病毒(Yellow head virus,YHV)目的产物的阳性样品检出率为66.7%,该方法对这些样品的灵敏度可能很低。目的产物测序后经NCBI Blast,与已报道的YHV相似性为76.5%—89%;系统发育树显示这3个来源的样品位于同一个分支,与已知的YHV/鳃联病毒(gill-associated virus,GAV)株均不相同,其亲缘关系与YHV较近,而与GAV较远。用新研发的YHV快速高灵敏检测试剂盒检测,结果表明,所有样品均为YHV强阳性。以上表明患AHPNS的养殖对虾中存在一种YHV的新株型的感染,这也是我国首次检测到YHV的感染。
文摘依据对虾黄头病毒（Yellow head virus,YHV）的非结构蛋白N基因序列,设计特异的锁式探针（Padlock probe,PLP）、检测探针及引物,建立YHV超分支滚环扩增（Hyper-branched rolling circle amplification,HRCA）检测试纸。灵敏度实验显示,YHV HRCA检测试纸能检测出的最低模板量为101拷贝,是RT-PCR灵敏度的100倍。特异性实验结果表明,该试纸能够特异性地对YHV进行检测。利用该检测试纸对进出口80批次虾样本进行检测,并将检测结果与常规RT-PCR相比较,结果显示,YHV HRCA检测试纸灵敏度方面优于常规RT-PCR方法,且操作简便、结果直观易读。
