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不同核酸提取方法对HBV-DNA检测性能验证情况分析
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作者 周文娟 林真 徐建萍 《现代医药卫生》 2024年第4期575-580,共6页
目的评估2种乙型肝炎病毒(HBV)-DNA提取方法及2家检测试剂的性能,有助于选择优化提取试剂和检测试剂。方法2023年4月采用达安全自动核酸提取仪提取法(磁珠法)和手工提取法(一步法),并用达安和圣湘2种HBV-DNA试剂检测,对其进行精密度、... 目的评估2种乙型肝炎病毒(HBV)-DNA提取方法及2家检测试剂的性能,有助于选择优化提取试剂和检测试剂。方法2023年4月采用达安全自动核酸提取仪提取法(磁珠法)和手工提取法(一步法),并用达安和圣湘2种HBV-DNA试剂检测,对其进行精密度、正确度、线性范围、检出限及抗干扰能力等性能进行验证和评价。结果达安全自动核酸提取仪提取达安试剂检测、手工提取达安试剂检测和手工提取圣湘试剂检测在精密度、正确度、线性范围、检出限方面验证结果均达标;达安全自动核酸提取仪提取圣湘试剂检测在低值检测中变异系数大于5%,最低检测限验证不合格;抗干扰能力方面,全自动核酸提取仪提取的2.0 g/dL血红蛋白浓度的样本用达安和圣湘试剂检测结果均不受影响。手工提取甘油三酯浓度达3000 mg/dL的样本用达安和圣湘试剂检测的结果均不受影响。结论不同厂家的提取和检测试剂避免混用,达安和圣湘试剂对HBV-DNA定量检测的结果均符合要求。 展开更多
关键词 乙型肝炎病毒-dna定量检测 全自动核酸提取仪法 手工提取法 性能验证
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DNA条形码技术融入普通昆虫学实验教学
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作者 康泽辉 孙丽娟 +1 位作者 郑桂玲 张晓 《实验室研究与探索》 CAS 北大核心 2024年第3期184-187,212,共5页
为了提升普通昆虫学实验教学质量,以DNA条形码技术为例,尝试将最新科研成果和技术与普通昆虫学实验教学进行融合。介绍了植物保护专业学生掌握DNA条形码技术的必要性,分析了在普通昆虫学实验教学中开展DNA条形码实验的可行性,在样品保存... 为了提升普通昆虫学实验教学质量,以DNA条形码技术为例,尝试将最新科研成果和技术与普通昆虫学实验教学进行融合。介绍了植物保护专业学生掌握DNA条形码技术的必要性,分析了在普通昆虫学实验教学中开展DNA条形码实验的可行性,在样品保存、DNA提取、PCR扩增、电泳检测、测序和分析等方面优化了以COI基因序列作为DNA条形码开展分子鉴定的具体流程,设计了开展DNA条形码专题实验或者将其与传统分类实验结合的实施和考核方案。DNA条形码技术的融入改变了普通昆虫学实验传统教学模式,也为探索创新性实验教学提供了思路。 展开更多
关键词 普通昆虫学 实验设计 课程改革 基因条形码
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吲哚羧酸类Dy(Ⅲ)配合物与DNA作用机制研究
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作者 罗思雨 朱小双 +2 位作者 何秋蓉 王思茗 李冰 《石油化工应用》 CAS 2024年第1期105-107,121,共4页
以7-氮杂吲哚-3-羧酸(7AI_(3)CAH_(2))为配体构筑了一例新型稀土Dy(Ⅲ)配合物[Dy(7AI_(3)CAH)_(2)(NO_(3))(H_(2)O)_(2)],利用元素分析、红外光谱、热重分析等对其进行结构表征。黏度法和荧光光谱表明该配合物与小牛胸腺DNA(CT-DNA)间... 以7-氮杂吲哚-3-羧酸(7AI_(3)CAH_(2))为配体构筑了一例新型稀土Dy(Ⅲ)配合物[Dy(7AI_(3)CAH)_(2)(NO_(3))(H_(2)O)_(2)],利用元素分析、红外光谱、热重分析等对其进行结构表征。黏度法和荧光光谱表明该配合物与小牛胸腺DNA(CT-DNA)间结合模式为嵌插结合,配合物与CT-DNA表现出良好结合作用。 展开更多
关键词 配合物 7-氮杂吲哚-3-羧酸 小牛胸腺dna
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混合模式层析分离纯化超螺旋质粒DNA
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作者 张鹏程 谭远志 +3 位作者 孙艳娜 张其磊 姚善泾 林东强 《高校化学工程学报》 EI CAS CSCD 北大核心 2023年第5期806-812,共7页
针对细胞裂解液中的超螺旋质粒DNA(sc pDNA)的分离,以质粒pVAX1为典型对象、采用Capto PlasmidSelect作为混合模式层析介质,探讨了料液中主要成分sc pDNA、开环质粒DNA(oc pDNA)和RNA的吸附行为,优化了分离条件,实现了从成分较为复杂的... 针对细胞裂解液中的超螺旋质粒DNA(sc pDNA)的分离,以质粒pVAX1为典型对象、采用Capto PlasmidSelect作为混合模式层析介质,探讨了料液中主要成分sc pDNA、开环质粒DNA(oc pDNA)和RNA的吸附行为,优化了分离条件,实现了从成分较为复杂的料液中高效分离sc pDNA。考察了上述3种组分的静态吸附,发现在(NH_(4))_(2)SO_(4)浓度c(NH_(4))_(2)SO4为1.9~2.5 mol·L^(-1)时,sc pDNA均具有较高的吸附量,确定c(NH_(4))_(2)SO_(4)=2.5 mol·L^(-1)的料液可直接上样,此时sc pDNA饱和吸附量为每克介质吸附3.3 mg。动态吸附实验发现,sc pDNA穿透略晚于oc pDNA,sc pDNA动态载量为每毫升介质负载2.00 mg,RNA吸附能力明显强于pDNA。进一步优化了洗脱、冲洗和上样量等分离条件,采用c(NH_(4))_(2)SO_(4)=2.5 mol·L^(-1)上样、c(NH_(4))_(2)SO_(4)=1.9 mol·L^(-1)冲洗、(c(NH_(4))_(2)SO_(4)=1.7 mol·L^(-1))+(cNaCl=0.3 mol·L^(-1))洗脱,sc pDNA纯度可达83.9%、同质性高达95.8%、收率为80.6%。结果表明,混合模式层析对sc pDNA选择性好、处理量较大,具有良好的应用价值。 展开更多
关键词 超螺旋质粒dna 吸附 混合模式层析 核酸分离
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Crystal Structures and DNA Binding Properties of 2-Naphthoxyacetic Acid Cu(Ⅱ) Complexes 被引量:7
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作者 刘艳珠 高红岩 +2 位作者 易绣光 李东平 李永绣 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2019年第8期1362-1369,共8页
Two new copper complexes based on 2-naphthoxyacetic acid ligand, namely [Cu(L)2(CH3CN)]2(1) and [Cu(L)(1,10-phen)2](2), where L = 2-naphthoxyacetic acid and 1,10-phen = 1,10-phenanthroline, were obtained by hydrotherm... Two new copper complexes based on 2-naphthoxyacetic acid ligand, namely [Cu(L)2(CH3CN)]2(1) and [Cu(L)(1,10-phen)2](2), where L = 2-naphthoxyacetic acid and 1,10-phen = 1,10-phenanthroline, were obtained by hydrothermal reaction and characterized by single-crystal X-ray diffraction. The binuclear complex 1 and mononuclear complex 2 belong to space group C2/c and P■, respectively. The binding properties of the two compounds with ct-DNA were investigated by UV-Vis and fluorescence spectra. The two compounds could bind with ct-DNA through interactions. Compound 2 displays stronger binding ability in the reaction with ct-DNA. 展开更多
关键词 2-naphthoxyacetic acid 1 10-PHENANTHROLINE dna BINDING spectrum
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EFFECT OF GLYCYRRHETINIC ACID ON DNA DAMAGE AND UNSCHEDULED DNA SYNTHESIS INDUCED BY BENZO(α)PYRENE 被引量:1
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作者 陈晓光 韩锐 《Chinese Medical Sciences Journal》 CAS CSCD 1995年第1期16-19,共4页
EFFECTOFGLYCYRRHETINICACIDONDNADAMAGEANDUNSCHEDULEDDNASYNTHESISINDUCEDBYBENZO(α)PYRENEChenXiaoguang(陈晓光)andH... EFFECTOFGLYCYRRHETINICACIDONDNADAMAGEANDUNSCHEDULEDDNASYNTHESISINDUCEDBYBENZO(α)PYRENEChenXiaoguang(陈晓光)andHanRui(韩锐)(Departm... 展开更多
关键词 甘草亭酸 dna损伤 dna合成 动物实验 肿瘤
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Polyunsaturated fatty acids and DNA methylation in colorectal cancer 被引量:2
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作者 Mostafa Moradi Sarabi Reza Mohammadrezaei Khorramabadi +1 位作者 Zohre Zare Ebrahim Eftekhar 《World Journal of Clinical Cases》 SCIE 2019年第24期4172-4185,共14页
Colorectal cancer(CRC) has been designated a major global problem, especially due to its high prevalence in developed countries. CRC mostly occurs sporadically(75%-80%), and only 20%-25% of patients have a family hist... Colorectal cancer(CRC) has been designated a major global problem, especially due to its high prevalence in developed countries. CRC mostly occurs sporadically(75%-80%), and only 20%-25% of patients have a family history.Several processes are involved in the development of CRC such as a combination of genetic and epigenetic alterations. Epigenetic changes, including DNA methylation play a vital role in the progression of CRC. Complex interactions between susceptibility genes and environmental factors, such as a diet and sedentary lifestyle, lead to the development of CRC. Clinical and experimental studies have confirmed the beneficial effects of dietary polyunsaturated fatty acids(PUFAs) in preventing CRC. From a mechanistic viewpoint, it has been suggested that PUFAs are pleiotropic agents that alter chromatin remodeling,membrane structure and downstream cell signaling. Moreover, PUFAs can alter the epigenome via modulation of DNA methylation. In this review, we summarize recent investigations linking PUFAs and DNA methylationassociated CRC risk. 展开更多
关键词 Colorectal cancer Polyunsaturated fatty acids dna methylation Epigenetic Docosahexaenoic acid Eicosapentaenoic acid
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Synthesis, Crystal Structure and DNA-Binding Property of a Mn(Ⅱ) Complex Based on 5-(Tri-fluoromethyl)pyridine-2-carboxylic Acid 被引量:4
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作者 王嘉恺 李冰 +2 位作者 武焕平 田晓燕 麻晓霞 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2019年第8期1349-1355,共7页
A new complex Mn(Htpc)2(H2O)2(1, Htpc = 5-(trifluoromethyl)pyridine-2-carboxylic acid) has been synthesized and characterized by elemental analysis, IR, TG and single-crystal X-ray diffraction. 1 belongs to triclinic ... A new complex Mn(Htpc)2(H2O)2(1, Htpc = 5-(trifluoromethyl)pyridine-2-carboxylic acid) has been synthesized and characterized by elemental analysis, IR, TG and single-crystal X-ray diffraction. 1 belongs to triclinic system, space group P■ with a = 5.0885(10), b = 6.5574(13), c = 14.016(3) ?, β = 90.67(3)o, V = 436.34(17) ?3, Z = 1, Dc = 1.793 g·cm-3, μ = 0.855 mm-1, Mr = 471.18, F(000) = 235, the final R = 0.0454 and wR = 0.1134 for 1998 observed reflections with I > 2σ(I). The Mn(Ⅱ) ion is coordinated by two N and two O atoms from two Htpc as well as two O atoms from two coordinated water molecules, forming a 0D motif with distorted octahedral coordinate geometry. The adjacent 0D units are linked into 1D chains through hydrogen bond O(1W)–H(1 WB)···O(2), and via the O(1 W)–H(1 WA)···O(1) hydrogen bond the neighboring 1D chains are connected into a 2D supramolecular layer. Moreover, the interactions between the ligand and its complex with CT-DNA were studied by EtBr fluorescence probe, which suggested that these compounds bind to CT-DNA through an intercalation mode. The binding constants were 0.41 and 0.64 for Htpc and complex 1, respectively. It indicates that the interaction between complex 1 and CT-DNA is stronger than Htpc. 展开更多
关键词 5-(trifluoromethyl)pyridine-2-carboxylic acid crystal structure dna fluorescence SPECTRA
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中国汉族人群线粒体DNA单倍群与尿酸水平的关联研究
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作者 陈璐 谭婧泽 +2 位作者 王久存 金力 郑鸿翔 《复旦学报(自然科学版)》 CAS CSCD 北大核心 2023年第3期392-399,共8页
尿酸(UA)是人体内嘌呤核苷酸代谢的最终产物,与多种慢性疾病相关。因线粒体处于人体代谢的核心位置,线粒体DNA变异可能影响血液中尿酸水平。本研究对来自广西南宁、江苏泰州和河南郑州的3个中国汉族人群共计2837例样本(其中男性样本111... 尿酸(UA)是人体内嘌呤核苷酸代谢的最终产物,与多种慢性疾病相关。因线粒体处于人体代谢的核心位置,线粒体DNA变异可能影响血液中尿酸水平。本研究对来自广西南宁、江苏泰州和河南郑州的3个中国汉族人群共计2837例样本(其中男性样本1112例、女性样本1725例)进行分析,对样本初始的UA值矫正了性别和年龄因素。本研究根据线粒体DNA的变异将受试者分为16种基础单倍群,通过比较每个单倍群样本和其他样本的UA水平差异,探索线粒体单倍群和UA的相关性。在总体3个汉族人群中,M8单倍群的UA矫正值((310.5±87.2)μmol/L)显著低于其他单倍群((326.1±80.6)μmol/L,P=0.02),B5单倍群的UA矫正值((338.8±72.5)μmol/L)显著高于其他单倍群((324.9±81.2)μmol/L,P=0.01)。本研究结合后续分析发现,在总人群、南宁人群和泰州人群女性数据中,M8单倍群均与低UA水平显著相关;在总人群和女性数据中,B5单倍群与高UA水平显著相关。综上所述,本研究在中国汉族人群中发现了与UA水平显著相关的线粒体单倍群,为后续线粒体DNA变异在尿酸代谢中的作用机制研究提供线索。 展开更多
关键词 中国汉族人群 尿酸 线粒体dna 关联研究
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Protective Roles of α-lipoic Acid in Rat Model of Mitochondrial DNA4834bp Deletion in Inner Ear 被引量:2
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作者 彭炜 胡钰娟 +4 位作者 钟毅 陈蓓 孙宇 杨阳 孔维佳 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2010年第4期514-518,共5页
The protective roles of α-lipoic acid in the rat model of mitochondrial DNA (mtDNA) 4834bp deletion in inner ear were investigated. Forty female Wistar rats at 4 weeks of age were divided into four groups: group A (D... The protective roles of α-lipoic acid in the rat model of mitochondrial DNA (mtDNA) 4834bp deletion in inner ear were investigated. Forty female Wistar rats at 4 weeks of age were divided into four groups: group A (D-galactose group, n=10), group B (D-galactose+α-lipoic acid group, n=10), group C (α-lipoic acid group, n=10), and group D (control group, n=10). Auditory brainstem response (ABR) was used to detect the hearing threshold. Colorimetry was used to analyze activity of superoxide dismutase (SOD) and concentration of malondialdehyde (MDA). The percentage of mtDNA4834bp deletion in inner ear was identified by real-time PCR. There was no significant difference in ABR threshold shift among all groups. The percentage of mtDNA4834bp deletion in group A was higher than that in other groups, but there was no significant difference in percentage of mtDNA4834bp deletion among groups B, C, and D. The activity of SOD in group A was lower than that in other groups. The concentration of MDA in group A was higher than that in other groups. It was concluded that there was no significant hearing loss when the percentage of mtDNA4834bp deletion was lower than 12.5%. α-Lipoic acid could prevent the reactive oxygen species (ROS)-induced mtDNA4834bp deletion in inner ear of rats. 展开更多
关键词 α-lipoic acid D-GALACTOSE mitochondrial dna common deletion PRESBYCUSIS
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Synthesis, Crystal Structure, Luminescent Property and DNA-Binding of a Cadmium Complex with 2,4-Bis-oxyacetate-benzoic Acid 被引量:1
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作者 郭航鸣 沈伟 +1 位作者 陈小菊 赵国良 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2015年第7期1080-1086,共7页
A complex [Cd2Na2(BOABA)2(H2O)8]·H2O(1) was synthesized by using 2,4-bisoxyacetate-benzoic acid(H3BOABA) and Cd(OH)2. It was characterized by elemental analysis, IR spectra, and single-crystal X-ray diffraction. ... A complex [Cd2Na2(BOABA)2(H2O)8]·H2O(1) was synthesized by using 2,4-bisoxyacetate-benzoic acid(H3BOABA) and Cd(OH)2. It was characterized by elemental analysis, IR spectra, and single-crystal X-ray diffraction. Complex 1 shows a two-dimensional 3-connected rigid plane. The interactions between the ligand and its complex with DNA were studied by Et Br fluorescence probe. Photoluminescent studies indicate that the complex may be excellent candidates for potential photoactive materials. 展开更多
关键词 镉配合物 晶体结构 发光性能 合成 dna 单晶X射线衍射 元素分析 红外光谱
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The effect of retinoic acid on Ito cell proliferation and content of DNA and RNA 被引量:13
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作者 Gao ZL Li DG +1 位作者 Lu HM Gu XH 《World Journal of Gastroenterology》 SCIE CAS CSCD 1999年第5期443-444,共2页
关键词 liver fibrosis RETINOIC acid ITO CELL CELL culture MICROSPECTROPHOTOMETER dna RNA
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EFFECT OF ASCORBIC ACID ON DNA SYNTHESIS,INTRACELLULAR ACCUMULATION OF ADM AND ADM RESISTANCE OF TUMOR CELL LINES
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作者 谢佐福 林贤东 +1 位作者 周冬梅 林声 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 1998年第2期32-35,共4页
EFFECTOFASCORBICACIDONDNASYNTHESIS,INTRACELLULARACCUMULATIONOFADMANDADMRESISTANCEOFTUMORCELLLINESXieZuofu谢佐福... EFFECTOFASCORBICACIDONDNASYNTHESIS,INTRACELLULARACCUMULATIONOFADMANDADMRESISTANCEOFTUMORCELLLINESXieZuofu谢佐福LinXiandong林贤东Zho... 展开更多
关键词 Ascorbic acid dna synthesis Drug RESISTANCE TUMOR CELL LINES Experimental therapy
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Improved preparation and identification of aristolochic acid-DNA adducts by solid-phase extraction with liquid chromatography-tandem mass spectrometry
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作者 GAO Haiyan GUO Fangqiu +3 位作者 FENG Feng YIN Junfa SONG Maoyong WANG Hailin 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2009年第12期1769-1776,共8页
Aristolochic acid (AA) is a known nephrotoxin and potential carcinogen, which can form covalent DNA adducts after metabolic activation in vivo and in vitro. A simple method for preparation and characterization of aris... Aristolochic acid (AA) is a known nephrotoxin and potential carcinogen, which can form covalent DNA adducts after metabolic activation in vivo and in vitro. A simple method for preparation and characterization of aristolochic acid-DNA adducts was developed. Four AA-adducts were synthesized by a direct reaction of AAI/AAII with 2'-deoxynucleosides. The reaction mixture was first cleaned-up and pre-concentrated using solid phase extraction (SPE), and further purified by a reversed-phase high performance liquid chromatography (HPLC). By the application of developed SPE procedure, matrices and byproducts in reaction mixture could be greatly reduced and adducts of high purity (more than 94% as indicated by HPLC) were obtained. The purified AA-DNA adducts were identified and characterized with liquid-electrospray ionization-quadrupole-time of flight-mass spectrometry (LC-ESI-Q-TOF-MS/MS) and LC-Diode array detector-fluorescence (LC-DAD-FL) analysis. This work provides a robust tool for possible large-scale preparation of AA-DNA adduct standards, which can promote the further studies on carcinogenic and mutagenic mechanism of aristolochic acids. 展开更多
关键词 反相高效液相色谱 dna加合物 马兜铃酸 固相萃取 制备工艺 串联质谱 二极管阵列检测器 反应混合物
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UV Assisted Preliminary DNA Binding Studies and Single-crystal X-ray Structure of 4-{(4-Nitrophenyl-sulfonamido)methyl}cyclohexanecarboxylic Acid 被引量:3
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作者 MUHAMMAD Danish RABIA Ayub Butt +2 位作者 MUHAMMAD Nawaz Tahir MUHAMMAD Ashfaq SYEDA Tahira Hafeez 《Chinese Journal of Structural Chemistry》 SCIE CAS CSCD 2017年第5期745-750,共6页
A new sulfonamide, 4-{(4-nitrophenylsulfonamido)methyl}cyclohexanecarboxylic acid(C14H18N2O6S), has been synthesized by the reaction of tranexamic acid and 4-nitrobenzenesulfonyl chloride in basic medium at room tempe... A new sulfonamide, 4-{(4-nitrophenylsulfonamido)methyl}cyclohexanecarboxylic acid(C14H18N2O6S), has been synthesized by the reaction of tranexamic acid and 4-nitrobenzenesulfonyl chloride in basic medium at room temperature. The molecular structure was determined by FT-IR, NMR, elemental analysis and single-crystal X-ray technique. X-ray diffraction shows that the compound crystallizes in the monoclinic system, space group P21/c with a = 13.5980(7), b = 4.9877(2), c = 23.3878(13) ?, β = 93.254(3)o, Z = 4, V = 1583.67(14) ?3, μ = 0.237 mm-1, F(000) = 720, R = 0.0471 and w R = 0.1182. The molecules are related by inversion and paired into dimers via C–H···O interactions. The dimmers are interlinked due to strong N–H···O bonds, where O-atoms are of sulfonyl groups. The molecules are stabilized in the form of infinite two-dimensional network with base vectors [0 1 0] and [0 0 –1] in the plane(1 0 2). The existence of good intermolecular interactions suggests the biological importance of the synthesized molecule. The compound was screened for its interaction with FS-DNA using UV-visible spectroscopy. UV-visible spectroscopic results depict that the compound interacts with DNA by mixed binding mode intercalation along with hydrogen bonding. Negative values of ΔG(–23.34, –17.79 k J·mol-1) indicate spontaneity of the compound-DNA adduct formation. 展开更多
关键词 SULFONAMIDE tranexamic acid 4-nitrobenzenesulfonyl chloride XRD FS-dna INTERCALATION
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三种游离核酸提取试剂盒对血浆cfDNA提取性能的比较 被引量:1
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作者 应超 蔡燕宁 +3 位作者 郝淑文 王婷 刘沅贺 赵立芳 《实用医学杂志》 CAS 北大核心 2023年第12期1556-1563,共8页
目的综合评估3种游离核酸(cfDNA)提取试剂盒,以筛选出经济可靠的商品试剂盒。方法我们使用了3种不同的试剂盒提取10名健康人血浆中的cfDNA,并使用Agilent 2100生物芯片分析仪对cfDNA片段大小和丰度进行评估。同时,我们还使用微滴式数字P... 目的综合评估3种游离核酸(cfDNA)提取试剂盒,以筛选出经济可靠的商品试剂盒。方法我们使用了3种不同的试剂盒提取10名健康人血浆中的cfDNA,并使用Agilent 2100生物芯片分析仪对cfDNA片段大小和丰度进行评估。同时,我们还使用微滴式数字PCR(ddPCR)对cfDNA中的核糖核酸酶P蛋白亚基p30(RPP30)、NADH脱氢酶亚基1(ND1)、NADH脱氢酶亚基4(ND4)基因拷贝数进行定量,并利用实时荧光定量PCR(qPCR)检测cfDNA中藤黄节杆菌序列(ALU)ALU115和ALU247的浓度。此外,我们还在混合血浆中掺入50~766 bp的DNA Ladder,然后使用上述3种提取试剂盒对其进行提取,并使用Agilent 2100生物芯片分析仪分析各DNA片段的浓度,以计算不同试剂盒对不同大小的DNA片段的回收率和提取偏好性。结果3种试剂盒从健康人血浆中纯化的100~300 bp cfDNA浓度分别为(5.10±1.99)、(4.64±3.09)和(1.82±1.29)ng/mL(P=0.006)。Kit A所提取的RPP30拷贝数显著高于Kit C(P=0.018),而Kit A和Kit B所提取的ND1和ND4拷贝数也均显著高于Kit C(P=0.001;P=0.001;P=0.001;P=0.001)。此外,Kit A所提取的cfDNA中,ALU 115和ALU 247的浓度也显著高于Kit C(P=0.009;P=0.003)。3种试剂盒对混合血浆中掺入的外源性DNA Ladder的回收率差异有统计学意义(P<0.001),同时Kit B和Kit C对不同大小的DNA片段也存在提取偏好性。结论Kit A性能最佳,Kit B是一种低成本替代方案,其工作流程更简单省时。 展开更多
关键词 游离dna 提取试剂盒 核酸提取
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Effect of mono-/divalent metal ions on the conductivity characteristics of DNA solutions transferring through a microfluidic channel
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作者 朱洁 薛菁 +3 位作者 赵伟 张琛 冯晓强 王凯歌 《Chinese Physics B》 SCIE EI CAS CSCD 2023年第11期161-167,共7页
Interactions between deoxyribonucleic acid(DNA) and metal ions are vital for maintaining life functions, however,there are still unsolved questions about its mechanisms. It is of great practical significance to study ... Interactions between deoxyribonucleic acid(DNA) and metal ions are vital for maintaining life functions, however,there are still unsolved questions about its mechanisms. It is of great practical significance to study these issues for medical chip design, drug development, health care, etc. In this investigation, the conductivity properties of λ-DNA solutions with mono-/divalent metal ions(Na+, K^(+), Mg^(2+), and Ca^(2+)) are experimentally studied as they are electrically driven through a 5 μm microfluidic channel. Experimental data indicate that the conductivities of λ-DNA solutions with metal ions(M+/M2+) basically tend to reduce firstly and then increase as the voltage increases, of which the turning points varied with the metal ions. When the voltage surpasses turning points, the conductivity of λ-DNA-M+solutions increases with the concentration of metal ions, while that of λ-DNA-M^(2+)solutions decrease. Moreover, the conductivity of λ-DNA-M^(2+)solutions is always smaller than that of λ-DNA-M+solutions, and with high-concentration M^(2+), it is even smaller than that of the λ-DNA solution. The main reasons for the above findings could be attributed to the polarization of electrodes and different mechanisms of interactions between metal ions and λ-DNA molecules. This investigation is helpful for the precise manipulation of single DNA molecules in micro-/nanofluidic space and the design of new biomedical micro-/nanofluidic sensors. 展开更多
关键词 MICROFLUIDICS interaction between deoxyribonucleic acid(dna)and metal ions conductivity-voltage relations asymmetric electrodes
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MGMT is down-regulated independently of promoter DNA methylation in rats with all-trans retinoic acidinduced spina bifida aperta 被引量:2
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作者 He-Nan Zhang Yi Guo +3 位作者 Wei Ma Jia Xue Wei-Lin Wang Zheng-Wei Yuan 《Neural Regeneration Research》 SCIE CAS CSCD 2019年第2期361-368,共8页
O6-methylguanine DNA methyltransferase(MGMT), a DNA repair enzyme, has been reported in some congenital malformations, but it is less frequently reported in neural tube defects. This study investigated MGMT mRNA expre... O6-methylguanine DNA methyltransferase(MGMT), a DNA repair enzyme, has been reported in some congenital malformations, but it is less frequently reported in neural tube defects. This study investigated MGMT mRNA expression and methylation levels in the early embryo and in different embryonic stages, as well as the relationship between MGMT and neural tube defects. Spina bifida aperta was induced in rats by a single intragastric administration of all-trans retinoic acid on embryonic day(E) 10, whereas normal control rats received the same amount of olive oil on the same embryonic day. DNA damage was assessed by detecting γ-H2 A.X in spina bifida aperta rats. Real time-polymerase chain reaction was used to examine mRNA expression of MGMT in normal control and spina bifida aperta rats. In normal controls, the MGMT mRNA expression decreased with increasing embryonic days, and was remarkably reduced from E11 to E14, reaching a minimum at E18. In the spina bifida aperta model, γ-H2 A.X protein expression was increased, and mRNA expression of MGMT was markedly decreased on E14, E16, and E18. Bisulfite sequencing polymerase chain reaction for MGMT promoter methylation demonstrated that almost all CpG sites in the MGMT promoter remained unmethylated in both spina bifida aperta rats and normal controls, and there was no significant difference in methylation level between the two groups on either E14 or E18. Our results show that DNA damage occurs in spina bifida aperta rats. The mRNA expression of MGMT is downregulated, and this downregulation is independent of promoter DNA methylation. 展开更多
关键词 nerve REGENERATION NEURAL tube defects spina bifida aperta spinal cord ALL-TRANS retinoic acid O6-methylguanine dna methyltransferase gene expression dna methylation PROMOTER BISULFITE sequencing polymerase chain reaction NEURAL REGENERATION
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MEHP对小鼠睾丸间质细胞DNA甲基化水平和细胞周期进程的影响
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作者 翁晓梦 李玲 +5 位作者 宋贝贝 黄金瑞 德小明 李丽萍 张亚娟 张鹏举 《宁夏医科大学学报》 2023年第8期757-763,共7页
目的探讨邻苯二甲酸单(2-乙基已基)酯(MEHP)对小鼠睾丸间质细胞(TM-3)DNA甲基化水平和周期进程的影响。方法体外培养TM-3细胞,MEHP按照0、200、400、800μmol·L^(-1)共4个梯度进行分组,待其长到对数生长期,染毒24 h后处理细胞;采用... 目的探讨邻苯二甲酸单(2-乙基已基)酯(MEHP)对小鼠睾丸间质细胞(TM-3)DNA甲基化水平和周期进程的影响。方法体外培养TM-3细胞,MEHP按照0、200、400、800μmol·L^(-1)共4个梯度进行分组,待其长到对数生长期,染毒24 h后处理细胞;采用Western blot检测DNMT1、DNMT3B两种甲基化转移酶(DNMTs)和转录因子FOXO1蛋白表达水平,流式细胞术检测细胞周期进程,RT-qPCR技术检测细胞周期蛋白依赖性激酶CDK2、细胞周期抑制因子P27 mRNA表达水平;给予TM-3细胞不同浓度的甲基化抑制剂5-氮杂脱氧胞苷(5-Aza-Cdr)溶液(0、10^(-4)、10^(-3)、10^(-2)、10^(-1)、10μmol·L^(-1))处理,采用CCK-8法检测细胞存活率,确定干预组染毒剂量;设置对照组(0μmol·L^(-1))、400μmol·L^(-1)MEHP染毒组、MEHP(400μmol·L^(-1))+5-Aza-Cdr(10-4μmol·L^(-1))干预组,采用CCK-8法、Western blot、流式细胞术、RT-qPCR法检测各项实验指标。结果Western blot结果显示,与0μmol·L^(-1)组相比,400、800μmol·L^(-1)MEHP染毒组DNMT1蛋白表达水平降低,DNMT3B蛋白表达水平升高(P均<0.01);200、400、800μmol·L^(-1)组FOXO1蛋白表达水平均升高(P均<0.01)。流式细胞术结果显示,MEHP染毒导致细胞增殖受阻。RT-qPCR结果显示,与对照组相比,随着染毒剂量的增加,P27 mRNA表达水平升高,CDK2 mRNA表达水平降低(P均<0.05);抑制剂干预后Western blot结果显示,与400μmol·L^(-1)MEHP染毒组相比,MEHP+5-Aza-Cdr干预组DNMT1、DNMT3B蛋白表达水平降低,FOXO1蛋白表达水平升高(P均<0.05);RT-qPCR结果显示,与400μmol·L^(-1)MEHP染毒组相比,MEHP+5-Aza-Cdr干预组P27 mRNA表达水平上升(P<0.05);流式细胞术结果显示,与对照组相比,400μmol·L^(-1)MEHP染毒组、MEHP+5-Aza-Cdr干预组细胞均阻滞在G1期(P均<0.01)。结论MEHP影响TM-3细胞正常分裂与增殖,与DNMTs相关蛋白表达水平改变、甲基化水平的异常修饰有关。 展开更多
关键词 邻苯二甲酸单(2-乙基己基)酯 dna甲基化 细胞周期
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Synthesis and DNA Cleavage Studies of 2,6-Dimethoxyhydroquinone-3-Mercaptoacetic Acid Conjugates
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作者 Yu Fei SONG Pin YANG 《Chinese Chemical Letters》 SCIE CAS CSCD 2001年第8期697-700,共4页
In an effort to investigate the use of short peptide chains as carriers of new anti-tumor agents, we synthesized four tripeptide-cytotoxic agent conjugates: DMQ-MA-Lys(DMQ-MA)-Phe -Arg-Ome, DMQ-MA-Lys(DMQ-MA)-Ile-Arg-... In an effort to investigate the use of short peptide chains as carriers of new anti-tumor agents, we synthesized four tripeptide-cytotoxic agent conjugates: DMQ-MA-Lys(DMQ-MA)-Phe -Arg-Ome, DMQ-MA-Lys(DMQ-MA)-Ile-Arg-Ome, DMQ-MA-Lys(DMQ-MA)-Val-Arg-Ome, DMQ-MA-Lys(DMQ-MA)-Lys(Cbz)-Arg-Ome. The cytotoxic agent conjugated to the N-terminal and the ξ-amino group of Lysine of the tripeptide is 2,6-dimethoxyhydroquinone-3- mercaptoacetic acid (DMQ-MA). The tripeptides were synthesized by coupling protected amino acid residues according to Pfp/DCC methods (Pfp: pentafluorophenol, DCC:N,N’-dicyclohexyl- carbodiimide) in solution. Agarose gel electrophoresis showed that these compounds can cleave supercoiled DNA into open-circular form in drug concentration as low as 4-50 μM without H2O2 and UV irradiation. Further studies on their cytotoxicity for these conjugates are ongoing. 展开更多
关键词 2 6-dimethoxyhydroquinone-3-mercaptoacetic acid TRIPEPTIDE CLEAVAGE PBR322 dna
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