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Afforestation increases microbial diversity in low-carbon soils
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作者 Xuesen Pang Chuankuan Wang +1 位作者 Chengjie Ren Zhenghu Zhou 《Journal of Forestry Research》 SCIE EI CAS CSCD 2024年第2期14-22,共9页
Afforestation has an important role in biodiversity conservation and ecosystem function improvement.A meta-analysis was carried out in China,which has the largest plantation area globally,to quantify the effects of pl... Afforestation has an important role in biodiversity conservation and ecosystem function improvement.A meta-analysis was carried out in China,which has the largest plantation area globally,to quantify the effects of plantings on soil microbial diversity.The results showed that the overall effect of afforestation on soil microbial diversity was positive across the country.Random forest algorithm suggested that soil carbon was the most important factor regulating microbial diversity and the positive response was only found with new plantings on low-carbon bare lands but not on high-carbon farmlands and grasslands.In addition,afforestation with broadleaved species increased microbial diversity,whereas planting with conifers had no effect on microbial diversity.This study clarified the effects of plantings on soil microbial diversity,which has an important implication for establishing appropriate policies and practices to improve the multiple functionalities(e.g.,biodiversity conservation and climate change mitigation)during plantation establishment. 展开更多
关键词 AFFORESTATION microbial diversity Soil microbial communities Species-energy theory Plantations
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Effects of land-use patterns on soil microbial diversity and composition in the Loess Plateau,China
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作者 ZHANG Jian GUO Xiaoqun +2 位作者 SHAN Yujie LU Xin CAO Jianjun 《Journal of Arid Land》 SCIE CSCD 2024年第3期415-430,共16页
In the Loess Plateau of China,land-use pattern is a major factor in controlling underlying biological processes.Additionally,the process of land-use pattern was accompanied by abandoned lands,potentially impacting soi... In the Loess Plateau of China,land-use pattern is a major factor in controlling underlying biological processes.Additionally,the process of land-use pattern was accompanied by abandoned lands,potentially impacting soil microbe.However,limited researches were conducted to study the impacts of land-use patterns on the diversity and community of soil microorganisms in this area.The study aimed to investigate soil microbial community diversity and composition using high-throughput deoxyribonucleic acid(DNA)sequencing under different land-use patterns(apricot tree land,apple tree land,peach tree land,corn land,and abandoned land).The results showed a substantial difference(P<0.050)in bacterial alpha-diversity and beta-diversity between abandoned land and other land-use patterns,with the exception of Shannon index.While fungal beta-diversity was not considerably impacted by land-use patterns,fungal alpha-diversity indices varied significantly.The relative abundance of Actinobacteriota(34.90%),Proteobacteria(20.65%),and Ascomycota(77.42%)varied in soils with different land-use patterns.Soil pH exerted a dominant impact on the soil bacterial communities'composition,whereas soil available phosphorus was the main factor shaping the soil fungal communities'composition.These findings suggest that variations in land-use pattern had resulted in changes to soil properties,subsequently impacting diversity and structure of microbial community in the Loess Plateau.Given the strong interdependence between soil and its microbiota,it is imperative to reclaim abandoned lands to maintain soil fertility and sustain its function,which will have significant ecological service implications,particularly with regards to soil conservation in ecologically vulnerable areas. 展开更多
关键词 abandoned lands land-use pattern soil property diversity of soil microbe soil microbial community
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Impact of Storage Temperature on Microbial Diversity and Probiotic Effect of Liquid Brewers’ Yeast
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作者 Peter Alphonce Obuong Alaru Alfred Anakalo Shitandi +1 位作者 Symon Maina Mahungu John Muasya Kilumba Muia 《Open Journal of Animal Sciences》 2024年第3期168-182,共15页
Using probiotics as animal feed additives instead of antibiotics is gaining momentum to avert adverse negative effects on human health. Liquid brewers yeast (LBY) is an industrial by-product containing probiotic micro... Using probiotics as animal feed additives instead of antibiotics is gaining momentum to avert adverse negative effects on human health. Liquid brewers yeast (LBY) is an industrial by-product containing probiotic microorganisms and is also used as a protein supplement for dairy animals. Nevertheless, value chain actors lack of appropriate handling practices compromises the by-products quality and safety. This study aimed to determine the effect of variation in temperature on microbial diversity and probiotic effects during the storage time of LBY sampled from distributors and farmers from Githunguri sub-county of Kenya. The samples were stored at 20C, 25C and 30C, then tested on 0, 5, 10, 15 and 20 days. The studys parameters involved determining the pH levels, lactic acid bacteria (LAB), total coliform count (TCC), mould, and yeast in LBY. The rate (k) of the reaction kinetics model was used to extrapolate the expected probiotic shelf life. The LAB and yeast populations were reduced in a first-order reaction at all storage temperatures. The rate of reduction in the numbers of LAB reduced with an increase in temperature (k = 0.019 and 0.023) at 20C and 30C, respectively. Yeasts highest rate of growth reduction was 25C (k = 0.009) and least at 30C (k = 0.043). The minimum effective concentration for probiotics of 106 CFU/mL needed to observe the beneficial physiological impact on farm animals was achieved between 34.9 and 35.5 days at the tested storage temperatures. The study provides insight into the unexploited low-cost probiotic potential of LBY in dairy production. Conversely, handling practices and environmental microbial contamination along the value chain can compromise product quality and safety. There is a need to advocate its use in dairy for improved productivity and sensitize farmers to appropriate hygienic measures along the LBY value chain. 展开更多
关键词 Liquid Brewers’ Yeast microbial diversity PROBIOTICS Shelf Life
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Analysis of Microbial Community Structure and Diversity in Crop Rhizosphere Soil Based on Illumina NovaSeq Sequencing Platform
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作者 Huanhuan JIANG Lu CHEN +4 位作者 Jiamin ZHANG Honghuo HE Xiao CHEN Sainan LI Gang CHEN 《Asian Agricultural Research》 2024年第11期20-24,共5页
[Objectives]To make full use of crop rhizosphere microbial resources.[Methods]Illumina NovaSeq sequencing platform was used to analyze the richness and diversity of microbial community structure in rhizosphere soil of... [Objectives]To make full use of crop rhizosphere microbial resources.[Methods]Illumina NovaSeq sequencing platform was used to analyze the richness and diversity of microbial community structure in rhizosphere soil of rice and maize crops in Baitu Town,Gaoyao District,Zhaoqing City.[Results]A total of 14936 OTUs of bacteria and 1905 OTUs of fungi were obtained from three samples of rice rhizosphere soil,and 13437 OTUs of bacteria and 1413 OTUs of fungi were obtained from three samples of maize rhizosphere soil.The diversity and richness of bacterial communities were higher than those of fungi.There are differences in soil bacterial and fungal communities among different crop samples.The analysis of species with bacteria difference at genus level among crop rhizosphere soil samples showed that 18 genera with significant differences were obtained from 6 samples;species analysis of fungi at the genus level showed that 3 genera with significant differences were obtained from 6 samples.[Conclusions]The research results of this paper have positive significance for the development and utilization of soil resources in Zhaoqing City and the full exploitation of rice and maize rhizosphere microbial resources. 展开更多
关键词 Rhizosphere soil microbial flora Community diversity Illumina NovaSeq sequencing
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How Does Heat-Stress Intensity Affect the Stability of Microbial Activity and Diversity of Soil Microbial Communities in Outfields and Homefields’ Cultivation Practices in the Senegalese Groundnut Basin?
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作者 Paul Ndiaga Ciss Laure Tall +6 位作者 Saidou Nourou Sall Mariama Dalanda Diallo Paula Fernandes Tidiane Dieye Medoune Mbengue Espoir Gaglo Komi Assigbetse 《Open Journal of Soil Science》 2023年第2期97-123,共27页
Agroecosystems in the Senegalese groundnut basin experience long periods of high temperatures and drought, which disrupt the stability of soil microbial communities. This study evaluated how that stability is affected... Agroecosystems in the Senegalese groundnut basin experience long periods of high temperatures and drought, which disrupt the stability of soil microbial communities. This study evaluated how that stability is affected by homefields and outfields’ agricultural practices and the duration of heat stress. Specifically, we collected soils from organically farmed fields that receive continual high inputs of manure (homefields), and from fields that are rarely manured (outfields). Soil samples were submitted to artificial heat stress at 60°C for 3, 14, and 28 days, followed by 28 days of recovery at 28°C. We examined the functional stability of microbial communities by quantifying C mineralization, and characterized the stability of the communities’ taxonomic compositions via high-throughput DNA sequencing. We found that the microbial communities have a low resistance to heat stress in soils from both types of fields. However, the manuring practice does affect how the functional stability of microbial communities responds to different durations of heat stress. Although functional stability was not recovered fully in either soil, microbial community resilience seemed to be greater in homefield soils. Differences in manuring practices also affected the structural taxonomic stability of microbial communities: relative abundances of Bacilli, Chloroflexia, Actinobacteria and Sordariomycetes increased in the homefield stressed-soils, but decreased significantly in outfield soils. In contrast, relative abundances of α-Proteobacteria, γ-Proteobacteria and Eurotiomycetes increased significantly in outfield stressed-soils, while decreasing significantly in the homefield soils. Relative abundances of Bacilli changed little in outfield soils, indicating that this taxon is resistant to heat stress. In summary, the microbial communities’ capacities to resist heat stress and recover from it depend upon the organic richness of the soil (i.e., manuring practice) and the adaptation of soil microbes to environmental conditions. 展开更多
关键词 Groundnut Basin Senegal Agricultural Practice Heat Stress microbial Stability microbial diversity
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Screening of Preprocessing Method of Biolog for Soil Microbial Community Functional Diversity 被引量:2
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作者 党雯 郜春花 +4 位作者 张强 李建华 卢朝东 靳东升 卢晋晶 《Agricultural Science & Technology》 CAS 2015年第10期2247-2251,2255,共6页
As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the ... As one of the main methods of microbial community functional diversity measurement, biolog method was favored by many researchers for its simple oper- ation, high sensitivity, strong resolution and rich data. But the preprocessing meth- ods reported in the literatures were not the same. In order to screen the best pre- processing method, this paper took three typical treatments to explore the effect of different preprocessing methods on soil microbial community functional diversity. The results showed that, method B's overall trend of AWCD values was better than A and C's. Method B's microbial utilization of six carbon sources was higher, and the result was relatively stable. The Simpson index, Shannon richness index and Car- bon source utilization richness index of the two treatments were B〉C〉A, while the Mclntosh index and Shannon evenness were not very stable, but the difference of variance analysis was not significant, and the method B was always with a smallest variance. Method B's principal component analysis was better than A and C's. In a word, the method using 250 r/min shaking for 30 minutes and cultivating at 28 ℃ was the best one, because it was simple, convenient, and with good repeatability. 展开更多
关键词 Biolog method Preprocessing method Soil microbial community Func- tional diversity AWCD values
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Alterations of gut microbiota diversity, composition and metabonomics in testosterone-induced benign prostatic hyperplasia rats 被引量:4
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作者 Lu-Yao Li Jie Han +7 位作者 Lan Wu Cheng Fang Wei-Guang Li Jia-Min Gu Tong Deng Chang-Jiang Qin Jia-Yan Nie Xian-Tao Zeng 《Military Medical Research》 SCIE CAS CSCD 2023年第1期1-16,共16页
Background: Studies had shown many diseases affect the stability of human microbiota, but how this relates to benign prostatic hyperplasia(BPH) has not been well understood. Hence, this study aimed to investigate the ... Background: Studies had shown many diseases affect the stability of human microbiota, but how this relates to benign prostatic hyperplasia(BPH) has not been well understood. Hence, this study aimed to investigate the regulation of BPH on gut microbiota composition and metabonomics.Methods: We analyzed gut samples from rats with BPH and healthy control rats, the gut microbiota composition and metabonomics were detected by 16S rDNA sequencing and liquid chromatography tandem mass spectrometry(LC–MS/MS).Results: High-throughput sequencing results showed that gut microbiota beta-diversity increased(P<0.01) in the BPH group vs. control group. Muribaculaceae(P<0.01), Turicibacteraceae(P<0.05), Turicibacter(P<0.01) and Coprococcus(P<0.01) were significantly decreased in the BPH group, whereas that of Mollicutes(P<0.05) and Prevotella(P<0.05)were significantly increased compared with the control group. Despite profound interindividual variability, the levels of several predominant genera were different. In addition, there were no statistically significant differences in several bacteria. BPH group vs. control group: Firmicutes(52.30% vs. 57.29%, P>0.05), Bacteroidetes(46.54% vs. 41.64%,P>0.05), Clostridia(50.89% vs. 54.66%, P>0.05), Ruminococcaceae(25.67% vs. 20.56%, P>0.05). LC–MS/MS of intestinal contents revealed that differential metabolites were mainly involved in cellular processes, environmental information processing, metabolism and organismal systems. The most important pathways were global and overview maps, lipid metabolism, amino acid metabolism, digestive system and endocrine system. Through enrichment analysis, we found that the differential metabolites were significantly enriched in metabolic pathways, steroid hormone biosynthesis,ovarian steroidogenesis, biosynthesis of unsaturated fatty acids and bile secretion. Pearson correlation analysis(R=0.94) showed that there was a strong correlation between Prevotellaceae, Corynebacteriaceae, Turicibacteraceae,Bifidobacteriaceae and differential metabolites.Conclusions: Our findings suggested an association between the gut microbiota and BPH, but the causal relationship between the two groups is unclear. Thus, further studies are warranted to elucidate the potential mechanisms and causal relationships between BPH and gut microbiota. 展开更多
关键词 Benign prostatic hyperplasia Gut microbiota Intestinal metabolites microbial diversity
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Effects of vegetation type on soil microbial community structure and catabolic diversity assessed by polyphasic methods in North China 被引量:61
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作者 HAN Xue-mei WANG Ren-qing +3 位作者 LIU Jian WANG Meng-cheng ZHOU Juan GUO Wei-hua 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2007年第10期1228-1234,共7页
Soil microbes play a major role in ecological processes and are closely associated with the aboveground plant community. In order to understand the effects of vegetation type on the characteristics of soil microbial c... Soil microbes play a major role in ecological processes and are closely associated with the aboveground plant community. In order to understand the effects of vegetation type on the characteristics of soil microbial communities, the soil microbial communities were assessed by plate counts, phospholipid fatty acid (PLFA) and Biolog microplate techniques in five plant communities, i.e., soybean field (SF), artificial turf (AT), artificial shrub (AS), natural shrub (NS), and maize field (MF) in Jinan, Shandong Province, North China. The results showed that plant diversity had little discernible effect on microbial biomass but a positive impact on the evenness of utilized substrates in Biolog microplate. Legumes could significantly enhance the number of cultural microorganisms, microbial biomass, and community catabolic diversity. Except for SF dominated by legumes, the biomass of fungi and the catabolic diversity of microbial community were higher in less disturbed soil beneath NS than in frequently disturbed soils beneath the other vegetation types. These results confirmed that high number of plant species, legumes, and natural vegetation types tend to support soil microbial communities with higher function. The present study also found a significant correlation between the number of cultured bacteria and catabolic diversity of the bacterial community. Different research methods led to varied results in this study. The combination of several approaches is recommended for accurately describing the characteristics of microbial communities in many respects. 展开更多
关键词 BIOLOG LEGUME microbial biomass plant diversity phospholipid fatty acid (PLFA) soil microbes
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Degradation of chlorpyrifos in laboratory soil and its impact on soil microbial functional diversity 被引量:25
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作者 FANG Hua YU Yunlong +3 位作者 CHU Xiaoqiang WANG Xiuguo YANG Xiaoe YU Jingquan 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2009年第3期380-386,共7页
Degradation of chlorpyrifos at different concentrations in soil and its impact on soil microbial functional diversity were investigated under laboratory condition. The degradation half-live of chlorpyrifos at levels o... Degradation of chlorpyrifos at different concentrations in soil and its impact on soil microbial functional diversity were investigated under laboratory condition. The degradation half-live of chlorpyrifos at levels of 4, 8, and 12 mg/kg in soil were calculated to be 14.3, 16.7, and 18.0 d, respectively. The Biolog study showed that the average well color development (AWCD) in soils was significantly (P 〈 0.05) inhibited by chlorpyrifos within the first two weeks and thereafter recovered to a similar level as the control. A similar variation in the diversity indices (Simpson index lID and McIntosh index U) was observed, but no significant difference among the values of the Shannon-Wiener index H' was found in chlorpyrifos-treated soils. With an increasing chlorpyrifos concentration, the half-life of chlorpyrifos was significantly (P ≤ 0.05) extended and its inhibitory effect on soil microorganisms was aggravated. It is concluded that chlorpyrifos residues in soil had a temporary or short-term inhibitory effect on soil microbial functional diversity. 展开更多
关键词 BIOLOG CHLORPYRIFOS community-level physiological profile microbial functional diversity
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Effect of heavy metals on soil microbial activity and diversity in a reclaimed mining wasteland of red soil area 被引量:23
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作者 LIAO Min CHEN Cheng-li HUANG Chang-yong 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2005年第5期832-837,共6页
The microbial biomass, basal respiration and substrate utilization pattern in copper mining wasteland of red soil area, southern China, were investigated. The results indicated that soil microflora were obviously diff... The microbial biomass, basal respiration and substrate utilization pattern in copper mining wasteland of red soil area, southern China, were investigated. The results indicated that soil microflora were obviously different compared with that of the non-mine soil. Microbial biomass and basal respiration were negatively affected by the elevated heavy metal levels. Two important microbial ecophysiological parameters, namely, the ratio of microbial biomass C( Cmic )/organic C( Corg ) and metabolic quotient(qCO2 ) were closely correlated to heavy metal stress. There was a significant decrease in the Cmic/Corg ratio and an increase in the metabolic quotient with increasing metal concentration. Multivariate analysis of Biolog data for sole carbon source utilization pattern demonstrated that heavy metal pollution had a significant impact on microbial community structure and functional diversity. All the results showed that soil microbiological parameters had great potential to become the early sensitive, effective and liable indicators of the stresses or perturbations in soils of mining ecosystems. 展开更多
关键词 reclaimed mining wasteland soil microorganism soil microbial diversity
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Effect of Long-Term Application of Chemical Fertilizers on Microbial Biomass and Functional Diversity of a Black Soil 被引量:22
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作者 KONG Wei-Dong ZHU Yong-Guan +3 位作者 FU Bo-Jie HAN Xiao-Zeng ZHANG Lei HE Ji-Zheng 《Pedosphere》 SCIE CAS CSCD 2008年第6期801-808,共8页
An experiment with seven N, P, K-fertilizer treatments, i.e., control (no fertilizer), NP, NK, PK, NPK, NP2K, and NPK2 where P2 and K2 indicate double amounts of P and K fertilizers respectively, was conducted to exam... An experiment with seven N, P, K-fertilizer treatments, i.e., control (no fertilizer), NP, NK, PK, NPK, NP2K, and NPK2 where P2 and K2 indicate double amounts of P and K fertilizers respectively, was conducted to examine the effect of long-term continuous application of chemical fertilizers on microbial biomass and functional diversity of a black soil (Udoll in the USDA Soil Taxonomy) in Northeast China. The soil microbial biomass C ranged between 94 and 145 mg kg-1, with the NK treatment showing a lower biomass; the functional diversity of soil microbial community ranged from 4.13 to 4.25, with an increasing tendency from control to double-fertilizer treatments, and to triple-fertilizer treatments. The soil microbial biomass, and the microbial functional diversity and evenness did not show any significant differences among the different fertilizer treatments including control, suggesting that the long-term application of chemical fertilization would not result in significant changes in the microbial characteristics of the black soil. 展开更多
关键词 BIOLOG black soil chemical fertilizer microbial biomass microbial functional diversity
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Straw and biochar strongly affect functional diversity of microbial metabolism in paddy soils 被引量:7
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作者 YUAN Hong-zhao ZHU Zhen-ke +8 位作者 WEI Xiao-meng LIU Shou-long PENG Pei-qin Anna Gunina SHEN Jian-lin Yakov Kuzyakov GE Ti-da WU Jin-shui WANG Jiu-rong 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2019年第7期1474-1485,共12页
The application of straw and biochar is widely practiced for the improvement of soil fertility.However,its impact on microbial functional profiles,particularly with regard to paddy soils,is not well understood.The aim... The application of straw and biochar is widely practiced for the improvement of soil fertility.However,its impact on microbial functional profiles,particularly with regard to paddy soils,is not well understood.The aim of this study was to investigate the diversity of microbial carbon use patterns in paddy soils amended with straw or straw-derived biochar in a 3-year field experiment in fallow soil and at various development stages of a rice crop(i.e.,tillering and blooming).We applied the community level physiological profiling approach,with 15 substrates(sugars,carboxylic and amino acids,and phenolic acid).In general,straw application resulted in the greatest microbial functional diversity owing to the greater number of available C sources than in control or biochar plots.Biochar amendment promoted the use of α-ketoglutaric acid,the mineralization of which was higher than that of any other substrate.Principal component analyses indicated that microbial functional diversity in the biochar-amended soil was separated from those of the straw-amended and control soils.Redundancy analyses revealed that soil organic carbon content was the most important factor regulating the pattern of microbial carbon utilization.Rhizodeposition and nutrient uptake by rice plants modulated microbial functions in paddy soils and stimulated the microbial use of N-rich substances,such as amino acids.Thus,our results demonstrated that the functional diversity of microorganisms in organic amended paddy soils is affected by both physicochemical properties of amendment and plant growth stage. 展开更多
关键词 carbon metabolism microbial functional diversity BIOCHAR amendment PADDY soil MicroRespTM
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Microbial diversity in cold seep sediments from the northern South China Sea 被引量:11
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作者 Yong Zhang Xin Su +5 位作者 Fang Chen Yuanyuan Wang Lu Jiao Hailiang Dong Yongyang Huang Hongchen Jiang 《Geoscience Frontiers》 SCIE CAS 2012年第3期301-316,共16页
South China Sea (SCS) is the largest Western Pacific marginal sea. However, microbial studies have never been performed in the cold seep sediments in the SCS. In 2004, "SONNE" 177 cruise found two cold seep areas ... South China Sea (SCS) is the largest Western Pacific marginal sea. However, microbial studies have never been performed in the cold seep sediments in the SCS. In 2004, "SONNE" 177 cruise found two cold seep areas with different water depth in the northern SCS. Haiyang 4 area, where the water depth is around 3000 m, has already been confirmed for active seeping on the seafloor, such as microbial mats, authigenic carbonate crusts and bivalves. We investigated microbial abundance and diver- sity in a 5.55-m sediment core collected from this cold seep area. An integrated approach was employed including geochemistry and 16S rRNA gene phylogenetic analyses. Here, we show that microbial abun- dance and diversity along with geochemistry profiles of the sediment core revealed a coupled reaction between sulphate reduction and methane oxidation. Acridine orange direct count results showed that microbial abundance ranges from 105 to 106 cells/g sediment (wet weight). The depth-related variation of the abundance showed the same trend as the methane concentration profile. Phylogenetic analysis indicated the presence of sulphate-reducing bacteria and anaerobic methane-oxidizing archaea. The diver- sity was much higher at the surface, but decreased sharply with depth in response to changes in the geochemical conditions of the sediments, such as methane, sulphate concentration and total organic carbon. Marine Benthic Group B, Chloroflexi and JS1 were predominant phylotypes of the archaeal and bacterial libraries, respectively. 展开更多
关键词 16S rRNA microbial diversity Cold seep Marine sediments Northern South China Sea
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Microbial community diversity in the profile of an agricultural soil in northern China 被引量:6
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作者 Zhou Juan Guo Weihua +2 位作者 Wang Renqing Han Xuemei Wang Qiang 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2008年第8期981-988,共8页
The soil microorganisms at different depths play an important role in soil formation,ecosystem biogeochemistry,recycling of nutrients,and degradation of waste products.The aims of this study were to observe the microb... The soil microorganisms at different depths play an important role in soil formation,ecosystem biogeochemistry,recycling of nutrients,and degradation of waste products.The aims of this study were to observe the microbial diversity in the profile of an agricultural soil in northern China,and to research the correlation between soil microbes and geochemistry.First,the soil geochemistry of the profile was investigated through 25 chemical elements.Secondly,the various physiological groups of microorganisms were... 展开更多
关键词 BIOLOG geochemical elements microbial diversity soil profile
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Changes in Transformation of Soil Organic C and Functional Diversity of Soil Microbial Community Under Different Land Uses 被引量:22
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作者 LI Zhong-pei WU Xiao-chen CHEN Bi-yun 《Agricultural Sciences in China》 CAS CSCD 2007年第10期1235-1245,共11页
Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small water... Changes in soil biological and biochemical properties under different land uses in the subtropical region of China were investigated in order to develop rational cultivation and fertilization management. A small watershed of subtropical region of China was selected for this study. Land uses covered paddy fields, vegetable farming, fruit trees, upland crops, bamboo stands, and forestry. Soil biological and biochemical properties included soil organic C and nutrient contents, mineralization of soil organic C, and soil microbial biomass and community functional diversity. Soil organic C and total N contents, microbial biomass C and N, and respiration intensity under different land uses were changed in the following order: paddy fields (and vegetable farming) 〉 bamboo stands 〉 fruit trccs (and upland). The top surface (0-15 cm) paddy fields (and vegetable farming) were 76.4 and 80.8% higher in soil organic C and total N contents than fruit trees (and upland) soils, respectively. Subsurface paddy soils (15-30 cm) were 59.8 and 67.3% higher in organic C and total N than upland soils, respectively. Soil microbial C, N and respiration intensity in paddy soils (0-15 cm) were 6.36, 3.63 and 3.20 times those in fruit tree (and upland) soils respectively. Soil microbial metabolic quotient was in the order: fruit trees (and upland) 〉 forestry 〉 paddy fields. Metabolic quotient in paddy soils was only 47.7% of that in fruit tree (and upland) soils. Rates of soil organic C mineralization during incubation changed in the order: paddy fields 〉 bamboo stands 〉 fruit trees (and upland) and soil bacteria population: paddy fields 〉 fruit trees (and upland) 〉 forestry. No significant difference was found for fungi and actinomycetes populations. BIOLOG analysis indicated a changing order of paddy fields 〉 fruit trees (and upland) 〉 forestry in values of the average well cell development (AWCD) and functional diversity indexes of microbial community. Results also showed that the conversion from paddy fields to vegetable farming for 5 years resulted in a dramatic increase in soil available phosphorus content while insignificant changes in soil organic C and total N content due to a large inputs of phosphate fertilizers. This conversion caused 53, 41.5, and 41.3% decreases in soil microbial biomass C, N, and respiration intensity, respectively, while 23.6% increase in metabolic quotient and a decrease in soil organic C mineralization rate. Moreover, soil bacteria and actinomycetes populations were increased slightly, while fungi population increased dramatically. Functional diversity indexes of soil microbial community decreased significantly. It was concluded that land uses in the subtropical region of China strongly affected soil biological and biochemical properties. Soil organic C and nutrient contents, mineralization of organic C and functional diversity of microbial community in paddy fields were higher than those in upland and forestry. Overuse of chemical fertilizers in paddy fields with high fertility might degrade soil biological properties and biochemical function, resulting in deterioration of soil biological quality. 展开更多
关键词 land use patterns transformation of soil organic carbon functional diversity of soil microbial community
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Soil fungistasis and its relations to soil microbial composition and diversity:A case study of a series of soils with different fungistasis 被引量:8
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作者 Wu Minna Zhang Huiwen +3 位作者 Ll Xinyu Zhang Yan Su Zhencheng Zhang Chenggang 《Journal of Environmental Sciences》 SCIE EI CAS CSCD 2008年第7期871-877,共7页
Fungistasis is one of the important approaches to control soil-borne plant pathogens.Some hypotheses about the mechanisms for soil fungistasis had been established,which mainly focused on the soil bacterial community ... Fungistasis is one of the important approaches to control soil-borne plant pathogens.Some hypotheses about the mechanisms for soil fungistasis had been established,which mainly focused on the soil bacterial community composition,structure,diversity as well as function.In this study,the bacterial community composition and diversity of a series of soils treated by autoclaving,which coming from the same original soil sample and showing gradient fungistasis to the target soil-borne pathogen fungi Fusarium grami... 展开更多
关键词 soil fungistasis 16S rDNA clone library microbial diversity bacterial community composition
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Microbial diversity in Huguangyan Maar Lake of China revealed by high-throughput sequencing 被引量:4
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作者 HOU Qinghua FANG Zhou +1 位作者 ZHU Qingmei DONG Hongpo 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2019年第4期1245-1257,共13页
Huguangyan Maar Lake is a typical maar lake in the southeast of China. It is well preserved and not disturbed by anthropogenic activities. In this study, microbial community structures in sediment and water samples fr... Huguangyan Maar Lake is a typical maar lake in the southeast of China. It is well preserved and not disturbed by anthropogenic activities. In this study, microbial community structures in sediment and water samples from Huguangyan Maar Lake were investigated using a high-throughput sequencing method. We found significant differences between the microbial community compositions of the water and the sediment. The sediment samples contained more diverse Bacteria and Archaea than did the water samples. Actinobacteria, Betaproteobacteria, Cyanobacteria, and Deltaproteobacteria predominated in the water samples while Deltaproteobacteria, Anaerolineae, Nitrospira, and Dehalococcoidia were the major bacterial groups in the sediment. As for Archaea, Woesearchaeota (DHVEG-6), unclassified Archaea, and Deep Sea Euryarchaeotic Group were detected at higher abundances in the water, whereas the Miscellaneous Crenarchaeotic Group, Thermoplasmata, and Methanomicrobia were significantly more abundant in the sediment. Interactions between Bacteria and Archaea were common in both the water column and the sediment. The concentrations of major nutrients (NO^3-, PO4^3-, SiO3^2- and NH4^+) shaped the microbial population structures in the water. At the higher phylogenetic levels including phylum and class, many of the dominant groups were those that were also abundant in other lakes;however, novel microbial populations (unclassified) were often seen at the lower phylogenetic levels. Our study lays a foundation for examining microbial biogeochemical cycling in sequestered lakes or reservoirs. 展开更多
关键词 Huguangyan MAAR LAKE HIGH-THROUGHPUT SEQUENCING microbial diversity
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Thinning intensity affects microbial functional diversity and enzymatic activities associated with litter decomposition in a Chinese fir plantation 被引量:7
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作者 Wenya Xiao Fei Fei +2 位作者 Jiaojiao Diao Bin J.W.Chen Qingwei Guan 《Journal of Forestry Research》 SCIE CAS CSCD 2018年第5期1337-1350,共14页
Microbial functional diversity and enzymatic activities are critical to maintaining material circulation during litter decomposition in forests.Thinning,an important and widely used silvicultural treatment,changes the... Microbial functional diversity and enzymatic activities are critical to maintaining material circulation during litter decomposition in forests.Thinning,an important and widely used silvicultural treatment,changes the microclimate and promotes forest renewal.However,how thinning affects microbial functional diversity and enzymatic activities during litter decomposition remains poorly understood.We conducted thinning treatments in a Chinese fir plantation in a subtropical region of China with four levels of tree stem removal(0,30,50,and 70%),each with three replicates,and the effects of thinning on microbial functional diversity and enzymatic activities were studied 7 years after treatment by collecting litter samples four times over a 1-year period.Microbial functional diversity and enzymatic activities were analyzed using Biolog Ecoplates(Biolog Inc.,Hayward,CA,USA)based on the utilization of 31 carbon substrates.Total microbial abundance during litter decomposition was lower after the thinning treatments than without thinning.Microbial functional diversity did not differ significantly during litter decomposition,but the types of microbial carbon-source utilization did differ significantly with the thinning treatments.Microbial cellulase and invertase activities during litter decomposition were significantly higher under the thinning treatments due to changes in the litter carbon concentration and the ratios of carbon and lignin to nitrogen.The present study demonstrated the important influence of thinning on microbial activities during litter decomposition.Moderate-intensity thinning may maximize vegetation diversity and,in turn,increase the available substrate sources for microbial organisms in litter and promote nutrient cycling in forest ecosystems. 展开更多
关键词 Biology technology Litter decomposition microbial enzymatic activities Shannon diversity index
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Effects of viral infection and microbial diversity on patients with sepsis:A retrospective study based on metagenomic next-generation sequencing 被引量:20
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作者 Li-wei Duan Jin-long Qu +13 位作者 Jian Wan Yong-hua Xu Yi Shan Li-xue Wu Jin-hao Zheng Wei-wei Jiang Qi-tong Chen Yan Zhu Jian Zhou Wen-bo Yu Lei Pei Xi Song Wen-fang Li Zhao-fen Lin 《World Journal of Emergency Medicine》 SCIE CAS CSCD 2021年第1期29-35,共7页
BACKGROUND: The study aims to investigate the performance of a metagenomic next-generationsequencing (NGS)-based diagnostic technique for the identifi cation of potential bacterial and viral infectionsand eff ects of ... BACKGROUND: The study aims to investigate the performance of a metagenomic next-generationsequencing (NGS)-based diagnostic technique for the identifi cation of potential bacterial and viral infectionsand eff ects of concomitant viral infection on the survival rate of intensive care unit (ICU) sepsis patients.METHODS: A total of 74 ICU patients with sepsis who were admitted to our institution from February1, 2018 to June 30, 2019 were enrolled. Separate blood samples were collected from patients for bloodcultures and metagenomic NGS when the patients’ body temperature was higher than 38 °C. Patients’demographic data, including gender, age, ICU duration, ICU scores, and laboratory results, were recorded.The correlations between pathogen types and sepsis severity and survival rate were evaluated.RESULTS: NGS produced higher positive results (105 of 118;88.98%) than blood cultures(18 of 118;15.25%) over the whole study period. Concomitant viral infection correlated closelywith sepsis severity and had the negative effect on the survival of patients with sepsis. However,correlation analysis indicated that the bacterial variety did not correlate with the severity of sepsis.CONCLUSIONS: Concurrent viral load correlates closely with the severity of sepsis and thesurvival rate of the ICU sepsis patients. This suggests that prophylactic administration of antiviraldrugs combined with antibiotics may be benefi cial to ICU sepsis patients. 展开更多
关键词 SEPSIS Metagenomic next-generation sequencing Viral infections Bacterial infections microbial diversity
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Tolerance of Grasses to Heavy Metals and Microbial Functional Diversity in Soils Contaminated with Copper Mine Tailings 被引量:19
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作者 TENG Ying LUO Yong-Ming +3 位作者 HUANG Chang-Yong LONG Jian LI Zhen-Gao P. CHRISTIE 《Pedosphere》 SCIE CAS CSCD 2008年第3期363-370,共8页
Copper (Cu) mine tailings, because of their high content of heavy metals, are usually hostile to plant colonization. A pot experiment was conducted to determine the tolerance of four forage grasses to heavy metals i... Copper (Cu) mine tailings, because of their high content of heavy metals, are usually hostile to plant colonization. A pot experiment was conducted to determine the tolerance of four forage grasses to heavy metals in Cu mine tailings and to examine the variation in the microbial functional diversity of soils from the tailing sites in southern China. All the four grass species survived on Cu mine tailings and Cu mine tailing-soil mixture. However, on pure mine tailings, the growth was minimal, whereas the growth was maximum for the control without mine tailings. The tolerance of grasses to heavy metals followed the sequence: Paspalum notatum 〉 Festuea arundinaeea 〉 Lolium perenne 〉 Cynodon daetylon. The planting of forage grasses enhanced the soil microbial biomass. The Biolog data indicated that the soil microbial metabolic profile values (average well color development, community richness, and Shannon index) of the four forage grasses also followed the sequence: P. notatum 〉 F. arundinaeea 〉 L. perenne 〉 C. daetylon. Thus, P. notatum, under the experimental conditions of this study, may be considered as the preferred plant species for revegetation of Cu mine tailing areas. 展开更多
关键词 copper mine tailings forage grass heavy metal pollution microbial functional diversity
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