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UVI_02019870, a Puptive Effector from Ustilaginoidea virens, Interacts with a Chloroplastic-Like Protein OsCPL1
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作者 Shuai Li Jianming Zhou +1 位作者 Shibo Xiang Songhong Wei 《Phyton-International Journal of Experimental Botany》 SCIE 2020年第3期681-690,共10页
Ustilaginoidea virens,which causes rice false smut(RFS),is one of the most detrimental rice fungal diseases and poses a severe threat to rice production and quality.Effectors in U.virens often act as a group of essent... Ustilaginoidea virens,which causes rice false smut(RFS),is one of the most detrimental rice fungal diseases and poses a severe threat to rice production and quality.Effectors in U.virens often act as a group of essential virulence factors that play crucial roles in the interaction between host and the pathogen.Thus,the functions of individual effectors in U.virens need to be further explored.Here,we found a small secreted hypersensitive response-inducing protein UVI_02019870 was highly conserved in fungi.Furthermore,we performed Y2H and BiFC assay to demonstrated UVI_02019870 interacted with OsCPL1,which was predicted as a chloroplast precursor to regulate chloroplast signaling pathways.Our data provide a theory for gaining an insight into the molecular mechanisms underlying the UVI_02019870 virulence function. 展开更多
关键词 EFFECTOR Ustilaginoideavirens CHLOROPLAST interaction PATHOGENICITY
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Maintenance of Normal Stress Tolerance in the Moss Physcomitrella patens Lacking Chloroplastic CuZn-Superoxide Dismutase
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作者 Yuya Higashi Katsuaki Takechi +1 位作者 Hiroyoshi Takano Susumu Takio 《American Journal of Plant Sciences》 2015年第5期591-601,共11页
Superoxide dismutases (SODs) catalyze the dismutation of superoxide and play an important role in reducing oxidative stress in plants. Based on in-gel SOD activity staining, chloroplasts of the moss Physcomitrella pat... Superoxide dismutases (SODs) catalyze the dismutation of superoxide and play an important role in reducing oxidative stress in plants. Based on in-gel SOD activity staining, chloroplasts of the moss Physcomitrella patens have two CuZn-SODs as the major SOD isozymes and minor SODs, including a Fe-SOD and two Mn-SODs. To investigate the contribution of chloroplastic SODs to stress tolerance in P. patens, we generated a double mutant lacking chloroplastic CuZn-SOD genes. The mutant did not show any differences in comparison to the wild type based on the growth of protonemata on normal and high-salt media, extractable activities of the other SODs after culture on normal and high-salt media, and inhibition of Fv/Fm under stress conditions (high-salt, high-light, and high-temperature). These results indicate that chloroplastic CuZn-SODs do not play a principal role in oxidative stress tolerance in chloroplasts under the investigated conditions. These findings explain the previously reported unusual response of P. patens to copper deficiency, in which chloroplastic CuZn-SODs are preferentially inactivated but cytosolic CuZn-SODs are unaffected. 展开更多
关键词 Chloroplast KNOCKOUT Mutant PHYSCOMITRELLA patens Stress TOLERANCE Superoxide DISMUTASE
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A Golden2-like transcription factor, BnGLK1a, improves chloroplast development, photosynthesis, and seed weight in rapeseed
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作者 Qianwei zhang Yuanyi Mao +11 位作者 Zikun Zhao Xin Hu Ran Hu Nengwen Yin Xue Sun Fujun Sun Si Chen Yuxiang jiang Liezhao Liu Kun Lu Jiana Li Yu Pan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2024年第5期1481-1493,共13页
Enhancing photosynthetic efficiency is a major goal for improving crop yields under agricultural field conditions and is associated with chloroplast biosynthesis and development.In this study,we demonstrate that Golde... Enhancing photosynthetic efficiency is a major goal for improving crop yields under agricultural field conditions and is associated with chloroplast biosynthesis and development.In this study,we demonstrate that Golden2-like 1a(BnGLK1a)plays an important role in regulating chloroplast development and photosynthetic efficiency.Overexpressing BnGLK1a resulted in significant increases in chlorophyll content,the number of thylakoid membrane layers and photosynthetic efficiency in Brassica napus,while knocking down BnGLK1a transcript levels through RNA interference(RNAi)had the opposite effects.A yeast two-hybrid screen revealed that BnGLK1a interacts with the abscisic acid receptor PYRABACTIN RESISTANCE 1-LIKE 1-2(BnPYL1-2)and CONSTITUTIVE PHOTOMORPHOGENIC 9 SIGNALOSOME 5A subunit(BnCSN5A),which play essential roles in regulating chloroplast development and photosynthesis.Consistent with this,BnGLK1a-RNAi lines of B.napus display hypersensitivity to the abscisic acid(ABA)response.Importantly,overexpression of BnGLK1a resulted in a 10%increase in thousand-seed weight,whereas seeds from BnGLK1a-RNAi lines were 16%lighter than wild type.We propose that BnGLK1a could be a potential target in breeding for improving rapeseed productivity.Our results not only provide insights into the mechanisms of BnGLK1a function,but also offer a potential approach for improving the productivity of Brassica species. 展开更多
关键词 Brassica napus BnGLK1a chloroplast development photosynthetic efficiency YIELD
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Synergistic effects of carbon cycle metabolism and photosynthesis in Chinese cabbage under salt stress
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作者 Hao Liang Qiling Shi +8 位作者 Xing Li Peipei Gao Daling Feng Xiaomeng Zhang Yin Lu Jingsen Yan Shuxing Shen Jianjun Zhao Wei Ma 《Horticultural Plant Journal》 SCIE CAS CSCD 2024年第2期461-472,共12页
Chinese cabbage(Brassica rapa ssp. pekinensis) has a long cultivation history and is one of the vegetable crops with the largest cultivation area in China. However, salt stress severely damages photosynthesis and horm... Chinese cabbage(Brassica rapa ssp. pekinensis) has a long cultivation history and is one of the vegetable crops with the largest cultivation area in China. However, salt stress severely damages photosynthesis and hormone metabolism, nutritional balances, and results in ion toxicity in plants. To better understand the mechanisms of salt-induced growth inhibition in Chinese cabbage, RNA-seq and physiological index determination were conducted to explore the impacts of salt stress on carbon cycle metabolism and photosynthesis in Chinese cabbage. Here, we found that the number of thylakoids and grana lamellae and the content of starch granules and chlorophyll in the leaves of Chinese cabbage under salt stress showed a time-dependent response, first increasing and then decreasing. Chinese cabbage increased the transcript levels of genes related to the photosynthetic apparatus and carbon metabolism under salt stress, probably in an attempt to alleviate damage to the photosynthetic system and enhance CO_(2) fixation and energy metabolism. The transcription of genes related to starch and sucrose synthesis and degradation were also enhanced;this might have been an attempt to maintain intracellular osmotic pressure by increasing soluble sugar concentrations. Soluble sugars could also be used as potential reactive oxygen species(ROS) scavengers, in concert with peroxidase(POD)enzymes, to eliminate ROS that accumulate during metabolic processes. Our study characterizes the synergistic response network of carbon metabolism and photosynthesis under salt stress. 展开更多
关键词 Chinese cabbage Salt stress Carbon metabolism PHOTOSYNTHESIS CHLOROPLAST
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Across two phylogeographic breaks: Quaternary evolutionary history of a mountain aspen (Populus rotundifolia) in the Hengduan Mountains
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作者 Jieshi Tang Xiaoyan Fan +6 位作者 Richard I.Milne Heng Yang Wenjing Tao Xinran Zhang Mengyun Guo Jialiang Li Kangshan Mao 《Plant Diversity》 SCIE CAS CSCD 2024年第3期321-332,共12页
Biogeographical barriers to gene flow are central to plant phylogeography.In East Asia,plant distribution is greatly influenced by two phylogeographic breaks,the Mekong-Salween Divide and Tanaka-Kaiyong Line,however,f... Biogeographical barriers to gene flow are central to plant phylogeography.In East Asia,plant distribution is greatly influenced by two phylogeographic breaks,the Mekong-Salween Divide and Tanaka-Kaiyong Line,however,few studies have investigated how these barriers affect the genetic diversity of species that are distributed across both.Here we used 14 microsatellite loci and four chloroplast DNA fragments to examine genetic diversity and distribution patterns of 49 populations of Populus rotundifolia,a species that spans both the Mekong-Salween Divide and the Tanaka-Kaiyong Line in southwestern China.Demographic and migration hypotheses were tested using coalescent-based approaches.Limited historical gene flow was observed between the western and eastern groups of P.rotundifolia,but substantial flow occurred across both the Mekong-Salween Divide and Tanaka-Kaiyong Line,manifesting in clear admixture and high genetic diversity in the central group.Wind-borne pollen and seeds may have facilitated the dispersal of P.rotundifolia following prevalent northwest winds in the spring.We also found that the Hengduan Mountains,where multiple genetic barriers were detected,acted on the whole as a barrier between the western and eastern groups of P.rotundifolia.Ecological niche modeling suggested that P.rotundifolia has undergone range expansion since the last glacial maximum,and demographic reconstruction indicated an earlier population expansion around 600 Ka.The phylogeographic pattern of P.rotundifolia reflects the interplay of biological traits,wind patterns,barriers,niche differentiation,and Quaternary climate history.This study emphasizes the need for multiple lines of evidence in understanding the Quaternary evolution of plants in topographically complex areas. 展开更多
关键词 Chloroplast DNA MICROSATELLITE Phylogeographic break Populus rotundifolia Quaternary history Wind direction
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A mutation in the promoter of the yellow stripe-like transporter gene in cucumber results in a yellow cotyledon phenotype
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作者 Jiawei Pan Jia Song +3 位作者 Rahat Sharif Xuewen Xu Shutong Li Xuehao Chen 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2024年第3期849-862,共14页
Leaf color mutants in higher plants are considered to be ideal materials for studying the chlorophyll biosynthesis,photosynthesis mechanism and chloroplast development.Herein,we identified a spontaneous mutant,yc412,i... Leaf color mutants in higher plants are considered to be ideal materials for studying the chlorophyll biosynthesis,photosynthesis mechanism and chloroplast development.Herein,we identified a spontaneous mutant,yc412,in cultivated cucumber that exhibited yellow cotyledons.The yellow-lethal mutant was diagnosed with an abnormal chloroplast ultrastructure,and reduced photosynthetic capacity and pigment content.Through bulked segregant analysis-based whole-genome sequencing and fine genetic mapping,we narrowed the yellow cotyledons (yc) locus to a 96.8 kb interval on chromosome 3.By resequencing and molecular cloning,we showed that Csyc is a potential candidate gene,which encodes a yellow stripe-like (YSL) transporter.The T to C mutation in the promoter region of Csyc caused the yellow cotyledon phenotype in yc412.Compared to YZU027A (WT),the expression of Csyc was significantly downregulated in the cotyledons of yc412.Silencing of Csyc in cucumber via virus-induced gene silencing resulted in chlorotic leaves,mainly by suppressing the chlorophyll content.Furthermore,a comparative transcriptome analysis revealed that chloroplast-related genes and chlorophyll biosynthesis genes were significantly downregulated in yc412 cotyledons.Our results provide new insights into the molecular function of the YSL transporter in plant chloroplast development and chlorophyll synthesis. 展开更多
关键词 CUCUMBER yellow-lethal cotyledons chloroplast development yellow stripe-like transporter
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Phylogeny,molecular evolution,and dating of divergences in Lagerstroemia using plastome sequences 被引量:2
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作者 Jie Wang Wenchuang He +7 位作者 Xuezhu Liao Jin Ma Wei Gao Haoqi Wang Dili Wu Luke R.Tembrock Zhiqiang Wu Cuihua Gu 《Horticultural Plant Journal》 SCIE CAS CSCD 2023年第2期345-355,共11页
Lagerstroemia L.(Lythraceae)is a widely distributed genus of trees and shrubs native to tropical and subtropical environments from Southeast Asia to Australia,with numerous species highly valued as ornamentals.Althoug... Lagerstroemia L.(Lythraceae)is a widely distributed genus of trees and shrubs native to tropical and subtropical environments from Southeast Asia to Australia,with numerous species highly valued as ornamentals.Although the plastomes of many species in this genus have been sequenced,the rates of functional gene evolution and their effect on phylogenetic analyses have not been thoroughly examined.We compared three plastome sequence matrices to elucidate how differences in these datasets affected phylogenetic analyses.Robust phylogenetic relationships for Lagerstroemia species were reconstructed based on different plastome sequence partitions and multiple phylogenetic methods.Identification of single-nucleotide variants within different genes also provides basic data on the patterns of functional gene evolution in Lagerstroemia and may provide insights into how those mutations affect protein structure and potentially drive divergence via cytonuclear incompatibility.These results as well as analyses of non-synonymous and synonymous mutations,indicate that heterotachic modes of evolution are present in functional plastome genes and should be accounted for in the analyses of molecular evolution.In addition,divergence events within the Lagerstroemia were dated for the first time.Several of the divergence estimates corresponded to well-known Earth history events,such as the reduction in global temperatures at the Eocene/Oligocene boundary.Our analyses conducted in Lagerstroemia here dissects the various patterns in the divergence of Lagerstroemia and may provide a useful guide to help plant breeders,as well as the necessity of using plastomic data and as possible as to combine evidence from morphological characteristics to investigate the complicated interspecies relationship and the evolutionary dynamics of species. 展开更多
关键词 Lagerstroemia L Evolutionary rate Single-nucleotide variants Molecular dating Chloroplast CODON Covarion
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Molecular phylogeny and inflorescence evolution of Prunus(Rosaceae)based on RAD-seq and genome skimming analyses 被引量:1
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作者 Na Su Richard G.J.Hodel +8 位作者 Xi Wang Jun-Ru Wang Si-Yu Xie Chao-Xia Gui Ling Zhang Zhao-Yang Chang Liang Zhao Daniel Potter Jun Wen 《Plant Diversity》 SCIE CAS CSCD 2023年第4期397-408,共12页
Prunus is an economically important genus widely distributed in the temperate Northern Hemisphere.Previous studies on the genus using a variety of loci yielded conflicting phylogenetic hypotheses.Here,we generated nuc... Prunus is an economically important genus widely distributed in the temperate Northern Hemisphere.Previous studies on the genus using a variety of loci yielded conflicting phylogenetic hypotheses.Here,we generated nuclear reduced representation sequencing data and plastid genomes for 36 Prunus individuals and two outgroups.Both nuclear and plastome data recovered a well-resolved phylogeny.The species were divided into three main clades corresponding to their inflorescence types,-the racemose group,the solitary-flower group and the corymbose group-with the latter two sister to one another.Prunus was inferred to have diversified initially in the Late Cretaceous around 67.32 million years ago.The diversification of the three major clades began between the Paleocene and Miocene,suggesting that paleoclimatic events were an important driving force for Prunus diversification.Ancestral state reconstructions revealed that the most recent common ancestor of Prunus had racemose inflorescences,and the solitary-flower and corymb inflorescence types were derived by reduction of flower number and suppression of the rachis,respectively.We also tested the hybrid origin hypothesis of the racemose group proposed in previous studies.Prunus has undergone extensive hybridization events,although it is difficult to identify conclusively specific instances of hybridization when using SNP data,especially deep in the phylogeny.Our study provides well-resolved nuclear and plastid phylogenies of Prunus,reveals substantial cytonuclear discord at shallow scales,and sheds new light on inflorescence evolution in this economically important lineage. 展开更多
关键词 PRUNUS ROSACEAE RAD-Seq Chloroplast genome Hybridization Inflorescence evolution
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Plastid phylogenomics and species discrimination in the“Chinese”clade of Roscoea(Zingiberaceae)
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作者 Hai-Su Hu Jiu-Yang Mao +3 位作者 Xue Wang Yu-Ze Liang Bei Jiang De-Quan Zhang 《Plant Diversity》 SCIE CAS CSCD 2023年第5期523-534,共12页
Roscoea is an alpine or subalpine genus from the pan-tropical family Zingiberaceae,which consists of two disjunct groups in geography,namely the"Chinese"clade and the"Himalayan"clade.Despite extens... Roscoea is an alpine or subalpine genus from the pan-tropical family Zingiberaceae,which consists of two disjunct groups in geography,namely the"Chinese"clade and the"Himalayan"clade.Despite extensive research on the genus,Roscoea species remain poorly defined and relationships between these species are not well resolved.In this study,we used plastid genomes of nine species and one variety to resolve phylogenetic relationships within the"Chinese"clade of Roscoea and as DNA super barcodes for species discrimination.We found that Roscoea plastid genomes ranged in length from 163,063 to 163,796 bp,and encoded 113 genes,including 79 protein-coding genes,30 tRNA genes,four rRNA genes.In addition,expansion and contraction of the IR regions showed obvious infraspecifc conservatism and interspecific differentiation.Plastid phylogenomics revealed that species belonging to the"Chinese"clade of Roscoea can be divided into four distinct subclades.Furthermore,our analysis supported the independence of R.cautleoides var.pubescens,the recovery of Roscoea pubescens Z.Y.Zhu,and a close relationship between R.humeana and R.cautloides.When we used the plastid genome as a super barcode,we found that it possessed strong discriminatory power(90%)with high support values.Intergenic regions provided similar resolution,which was much better than that of protein-coding regions,hypervariable regions,and DNA universal barcodes.However,plastid genomes could not completely resolve Roscoea phylogeny or definitively discriminate species.These limitations are likely related to the complex history of Roscoea speciation,poorly defined species within the genus,and the maternal inheritance of plastid genomes. 展开更多
关键词 Medicinal plant Chloroplast genome Molecular phylogeny DNA barcoding DNA sequencing Species identification
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Os DXR interacts with Os MORF1 to regulate chloroplast development and the RNA editing of chloroplast genes in rice
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作者 CAO Peng-hui WANG Di +8 位作者 GAO Su LIU Xi QIAO Zhong-ying XIE Yu-lin DONG Ming-hui DU Tan-xiao ZHANG Xian ZHANG Rui JI Jian-hui 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第3期669-678,共10页
Plant chlorophyll biosynthesis and chloroplast development are two complex processes that are regulated by exogenous and endogenous factors. In this study, we identified OsDXR, a gene encoding a reductoisomerase that ... Plant chlorophyll biosynthesis and chloroplast development are two complex processes that are regulated by exogenous and endogenous factors. In this study, we identified OsDXR, a gene encoding a reductoisomerase that positively regulates chlorophyll biosynthesis and chloroplast development in rice. OsDXR knock-out lines displayed the albino phenotype and could not complete the whole life cycle process. OsDXR was highly expressed in rice leaves, and subcellular localization indicated that OsDXR is a chloroplast protein. Many genes involved in chlorophyll biosynthesis and chloroplast development were differentially expressed in the OsDXR knock-out lines compared to the wild type.Moreover, we found that the RNA editing efficiencies of ndhA-1019 and rpl2-1 were significantly reduced in the OsDXR knock-out lines. Furthermore, OsDXR interacted with the RNA editing factor OsMORF1 in a yeast two-hybrid screen and bimolecular fluorescence complementation assay. Finally, disruption of the plastidial 2-C-methyl-derythritol-4-phosphate pathway resulted in defects in chloroplast development and the RNA editing of chloroplast genes. 展开更多
关键词 RICE OsDXR Chloroplast development RNA editing OsMORF1
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Advancing approach and toolbox in optimization of chloroplast genetic transformation technology
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作者 LIU Yu-xin LI Fan +3 位作者 GAO Liang TU Zhang-li ZHOU Fei LIN Yong-jun 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第7期1951-1966,共16页
Chloroplast is a discrete,highly structured,and semi-autonomous cellular organelle.The small genome of chloroplast makes it an up-and-coming platform for synthetic biology.As a special means of synthetic biology,chlor... Chloroplast is a discrete,highly structured,and semi-autonomous cellular organelle.The small genome of chloroplast makes it an up-and-coming platform for synthetic biology.As a special means of synthetic biology,chloroplast genetic engineering shows excellent potential in reconstructing various sophisticated metabolic pathways within the plants for specific purposes,such as improving crop photosynthetic capacity,enhancing plant stress resistance,and synthesizing new drugs and vaccines.However,many plant species exhibit limited efficiency or inability in chloroplast genetic transformation.Hence,new transformation technologies and tools are being constantly developed.In order to further expand and facilitate the application of chloroplast genetic engineering,this review summarizes the new technologies in chloroplast genetic transformation in recent years and discusses the choice of appropriate synthetic biological elements for the construction of efficient chloroplast transformation vectors. 展开更多
关键词 CHLOROPLAST genetic engineering new technology plasmid optimization NANOTECHNOLOGY
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Identification of Green-Revertible Yellow 3(GRY3),encoding a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase involved in chlorophyll synthesis under high temperature and high light in rice
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作者 Hongzhen Jiang Anpeng Zhang +5 位作者 Banpu Ruan Haitao Hu Rui Guo Jingguang Chen Qian Qian Zhenyu Gao 《The Crop Journal》 SCIE CSCD 2023年第4期1171-1180,共10页
Chlorophyll,a green pigment in photosynthetic organisms,is generated by two distinct biochemical pathways,the tetrapyrrole biosynthetic pathway(TBP) and the methylerythritol 4-phosphate(MEP)pathway.MEP is one of the p... Chlorophyll,a green pigment in photosynthetic organisms,is generated by two distinct biochemical pathways,the tetrapyrrole biosynthetic pathway(TBP) and the methylerythritol 4-phosphate(MEP)pathway.MEP is one of the pathways for isoprenoid synthesis in plants,with 4-hydroxy-3-methylbut-2-enyl diphosphate reductase(HDR) catalyzing its last step.In this study,we isolated a greenrevertible yellow leaf mutant gry3 in rice and cloned the GRY3 gene,which encodes a HDR participating in geranylgeranyl diphosphate(GGPP) biosynthesis in chloroplast.A complementation experiment confirmed that a missense mutation(C to T) in the fourth exon of LOC_Os03g52170 causes the gry3 phenotype.Under high temperature and high light,transcript and protein abundances of GRY3 were reduced in the gry3 mutant.Transcriptional expression of chlorophyll biosynthesis,chloroplast development,and genes involved in photosynthesis were also affected.Excessive reactive oxygen species accumulation,cell death,and photosynthetic proteins degradation were occurred in the mutant.The content of GGPP was reduced in gry3 compared with Nipponbare,resulting in a stoichiometric imbalance of tetrapyrrolic chlorophyll precursors.These results shed light on the response of chloroplast biogenesis and maintenance in plants to high-temperature and high-light stress. 展开更多
关键词 Chloroplast High temperature High light RICE
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VG,encoding a thylakoid formation protein,regulates the formation of variegated leaves in tomato
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作者 Jianwen Song Lijie Guo +4 位作者 Lele Shang Wenqian Wang Chuying Yu Zhibiao Ye Junhong Zhang 《Horticultural Plant Journal》 SCIE CAS CSCD 2023年第1期98-108,共11页
Leaf-color mutations have been studied extensively in plants.However,to better understand the complex mechanisms underlying the formation of leaf color,it is essential to continue discover novel genes involved in the ... Leaf-color mutations have been studied extensively in plants.However,to better understand the complex mechanisms underlying the formation of leaf color,it is essential to continue discover novel genes involved in the process of leaf color development.In this study,we identified a variegated-leaf(vg)mutant in tomato that exhibited defective phenotypes in thylakoids and photosynthesis.To clone the vg locus,an F2population was constructed from the cross between the vg mutant(Solanum lycopersicum)and the wild tomato LA1589(S.pimpinellifolium).Using the map-based cloning approach,the vg locus was mapped on chromosome 7 and narrowed down to a 128 kb region that contained 21 open reading frames(ORFs).The expression levels of ORF9,ORF10,and ORF13 were significantly lower in vg than in the wild-type plants,while the ORF11 transcript level was elevated in vg.We then mutagenized ORF9,ORF10,and ORF13 by the CRISPR/Cas9 system in the wild-type tomato background and found that only the ORF10 mutation reproduced the phenotype of variegated leaves,indicating that ORF10 represents VG and its down-regulated expression was responsible for the variegated leaf phenotype.ORF10 encodes a thylakoid formation protein and its mutant lines showed reduced levels of chlorophyll synthesis and photosynthesis.Taken together,these results suggest that VG is necessary for chloroplast development,chlorophyll synthesis,and photosynthesis in tomato. 展开更多
关键词 CHLOROPLAST Genetic mapping MUTATION TOMATO Variegated leaves
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Gas flaring cause shifts in mesophyll and stomatal functional traits of Betula pubescens Ehrh.
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作者 Dina A.Ronzhina Svetlana V.Migalina Irek A.Yusupov 《Journal of Forestry Research》 SCIE CAS CSCD 2023年第6期2079-2087,共9页
In petroleum-producing territories of West Siberia(Russia),oil well gas flares have a thermal effect on nearby plant communities.Such communities can be used as models for studying plant acclimation to global warming.... In petroleum-producing territories of West Siberia(Russia),oil well gas flares have a thermal effect on nearby plant communities.Such communities can be used as models for studying plant acclimation to global warming.In the present study on the effect of the hydrothermal regime at the flare sites on mesophyll and stomatal functional traits of Betula pubescens,leaves were collected from trees at250 m(control site[CS]),200,150 and 100 m(maximum impact site[MIS])from a flare.From the CS to MIS site,the average annual air temperature increased by 0.5℃and bog water level decreased by 17 cm.On plants from the MIS,stomata were 16%smaller and density was 20%lower compared to those at the CS,resulting in lower maximum stomatal conductance in plants from the MIS(mean±SE:MIS 0.84±0.05 mol·m^(-2)s^(-1),CS 1.24±0.06 mol·m^(-2)s^(-1);F=12.6,P<0.01).Mesophyll cell volume was 1.9 times lower at MIS than at CS.Chloroplast numbers per cell also declined with distance from the flares,from 21(MIS)to18(CS;F=15.6,P<0.001),and chloroplast volume was 24%higher at the CS,whereas the number of mesophyll cells and chloroplasts numbers per unit leaf area were 1.9 and 1.8 times higher at the MIS than at the CS,respectively.As a result,leaves from the MIS had a large total mesophyll cell(Ames/A)and chloroplast(Achl/A)surface area per unit leaf area,resulting in a 46%increase in mesophyll conductance in plants from the MIS.Thus,structural changes in leaf epidermis consisted of a decrease in stomatal size and number,could lower transpiration losses with higher temperatures and less water.To compensate for the reduction in leaf conductance due to a decrease in stomatal conductance under these conditions,an increase in the number of mesophyll cells and chloroplasts per unit area provides a greater gas-exchange area and mesophyll conductance. 展开更多
关键词 Leaf traits Mesophyll cell volume Chloroplast numbers Mesophyll conductance Stomatal conductance
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OsTHA8 encodes a pentatricopeptide repeat protein required for RNA editing and splicing during rice chloroplast development
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作者 Yanwei Wang Yu Duan Pengfei Ai 《The Crop Journal》 SCIE CSCD 2023年第5期1353-1367,共15页
In higher plants, the chloroplast is the most important organelle for photosynthesis and for numerous essential metabolic processes in the cell. Although many genes involved in chloroplast development have been identi... In higher plants, the chloroplast is the most important organelle for photosynthesis and for numerous essential metabolic processes in the cell. Although many genes involved in chloroplast development have been identified, the mechanisms underlying such development are not fully understood. In this study, a rice(Oryza sativa) mutant exhibiting pale green color and seedling lethality was isolated from a mutant library. The mutated gene was identified as an ortholog of THA8(thylakoid assembly 8) in Arabidopsis and maize. This gene is designated as OsTHA8 hereafter. OsTHA8 showed a typical pentatricopeptide repeat(PPR) characteristic of only four PPR motifs. Inactivation of OsTHA8 led to a deficiency in chloroplast development in the rice seedling stage. OsTHA8 was expressed mainly in young leaves and leaf sheaths.The OsTHA8 protein was localized to the chloroplast. Loss of function of OsTHA8 weakened the editing efficiency of ndhB-611/737 and rps8-182 transcripts under normal conditions. Y2H and BiFC indicated that OsTHA8 facilitates RNA editing by forming an editosome with multiple organellar RNA editing factor(OsMORF8) and thioredoxin z(OsTRXz), which function in RNA editing in rice chloroplasts. Defective OsTHA8 impaired chloroplast ribosome assembly and resulted in reduced expression of PEP-dependent genes and photosynthesis-related genes. Abnormal splicing of the chloroplast gene ycf3 was detected in ostha8. These findings reveal a synergistic regulatory mechanism of chloroplast biogenesis mediated by RNA, broaden the function of the PPR family, and shed light on the RNA editing complex in rice. 展开更多
关键词 Oryza sativa L. Chloroplast biogenesis Pentatricopeptide repeat protein RNA editing RNA splicing
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PtrDJ1C,an atypical member of the DJ-1 superfamily,is essential for early chloroplast development and lignin deposition in poplar
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作者 Xinwei Wang Chunxue Shao +7 位作者 Libo Liu Yue Wang Yaqi An Hui Li Yunwei Ding Yanping Jing Xiaojuan Li Jianwei Xiao 《Horticultural Plant Journal》 SCIE CAS CSCD 2023年第5期1039-1054,共16页
The nuclear-encoded factors and the photosynthetic apparatus have been studied extensively during chloroplast biogenesis.However,many questions regarding these processes remain unanswered,particularly in perennial woo... The nuclear-encoded factors and the photosynthetic apparatus have been studied extensively during chloroplast biogenesis.However,many questions regarding these processes remain unanswered,particularly in perennial woody plants.As a model material of woody plants,poplar not only has very significant value of research,but also possesses economic and ecological properties.This study reports the Populus trichocarpa DJ-1C(PtrDJ1C)factor,encoded by a nuclear gene,and a member of the DJ-1 superfamily.PtrDJ1C knock-out with the CRISPR/Cas9 system resulted in different albino phenotypes.Chlorophyll fluorescence and immunoblot analyses showed that the levels of photosynthetic complex proteins decreased significantly.Moreover,the transcript level of plastid-encoded RNA polymerase-dependent genes and the splicing efficiency of several introns were affected in the mutant line.Furthermore,rRNA accumulation was abnormal,leading to developmental defects in chloroplasts and affecting lignin accumulation.We concluded that the PtrDJ1C protein is essential for early chloroplast development and lignin deposition in poplar. 展开更多
关键词 PtrDJ1C Chloroplast development Gene expression LIGNIN POPLAR
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OsPPR9 encodes a DYW-type PPR protein that affects editing efficiency of multiple RNA editing sites and is essential for chloroplast development
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作者 CHEN Chang-zhao WANG Ya-liang +12 位作者 HE Meng-xing LI Zhi-wen SHEN Lan LI Qing REN Deyong HU Jiang ZHU Li ZHANG Guang-heng GAO Zhen-yu ZENG Da-li GUO Long-biao QIAN Qian ZHANG Qiang 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第4期972-980,共9页
Photosynthesis occurs mainly in chloroplasts,whose development is regulated by proteins encoded by nuclear genes.Among them,pentapeptide repeat(PPR)proteins participate in organelle RNA editing.Although there are more... Photosynthesis occurs mainly in chloroplasts,whose development is regulated by proteins encoded by nuclear genes.Among them,pentapeptide repeat(PPR)proteins participate in organelle RNA editing.Although there are more than 450 members of the PPR protein family in rice,only a few affect RNA editing in rice chloroplasts.Gene editing technology has created new rice germplasm and mutants,which could be used for rice breeding and gene function study.This study evaluated the functions of OsPPR9 in chloroplast RNA editing in rice.The osppr9 mutants were obtained by CRISPR/Cas9,which showed yellowing leaves and a lethal phenotype,with suppressed expression of genes associated with chloroplast development and accumulation of photosynthetic-related proteins.In addition,loss of OsPPR9 protein function reduces the editing efficiency of rps8-C182,rpoC2-C4106,rps14-C80,and ndhB-C611 RNA editing sites,which affects chloroplast growth and development in rice.Our data showed that OsPPR9 is highly expressed in rice leaves and encodes a DYW-PPR protein localized in chloroplasts.Besides,the OsPPR9 protein was shown to interact with OsMORF2 and OsMORF9.Together,our findings provide insights into the role of the PPR protein in regulating chloroplast development in rice. 展开更多
关键词 rice(Oryza sativa L.) PPR protein chloroplast development RNA editing
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Patterns of synonymous codon usage bias in chloroplast genomes of seed plants 被引量:31
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作者 ZHOU Meng LONG Wei LI Xia 《Forestry Studies in China》 CAS 2008年第4期235-242,共8页
Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba, Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find general patterns of codon usage in... Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba, Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find general patterns of codon usage in chloroplast genomes of seed plants. The results show that chloroplast genomes of the six seed plants had similar codon usage patterns, with a strong bias towards a high representation of NNA and NNT codons. In chloroplast genomes of the six seed plants, the effective number of codons (ENC) for most genes was similar to that of the expected ENC based on the GC content at the third codon position, but several genes with low ENC values were laying below the expected curve. All of these data indicate that codon usage was dominated by a mutational bias in chloroplast genomes of seed plants and that selection appeared to be limited to a subset of genes and to only subtly affect codon usage. Meantime, four, six, eight, nine, ten and 12 codons were defined as the optimal codons in chloroplast genomes of the six seed plants. 展开更多
关键词 codon usage CHLOROPLAST GC content seed plant
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Effects of light intensity on leaf microstructure and growth of rape seedlings cultivated under a combination of red and blue LEDs 被引量:13
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作者 YAO Xu-yang LIU Xiao-ying +1 位作者 XU Zhi-gang JIAO Xue-lei 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2017年第1期97-105,共9页
The aim of this study was to evaluate the growth of rape (Brassica napus L.) seedlings under different light intensities to select appropriate conditions for cultivation in an indoor system. Seedlings were grown und... The aim of this study was to evaluate the growth of rape (Brassica napus L.) seedlings under different light intensities to select appropriate conditions for cultivation in an indoor system. Seedlings were grown under different light intensities of red and blue light provided by light-emitting diodes (LEDs) and their self-adjustment ability and changes in leaf microstructure were evaluated. Light was supplied by red LEDs with peak wavelengths of 630 (R1) and 660 nm (R2) and by blue LEDs (B) with a peak wavelength of 445 nm (the light intensity ratio of R1:R2:B was 3:3:2), at intensities of 400 (R1R2B400), 300 (R1R2B300), and 200 μmol m-2 s-1 (R1R2B200). Natural solar light served as the control (C). Plant height, stem diameter, root length, leaf area, and dry weight of rape seedlings gradually increased with increasing light intensity. The seedlings in the R1R2B400 treatment grew more vigorously, while those in the R1R2B200 treatment were weaker. The photosynthetic pigment contents did not differ significantly between the R1R2B400 treatment and C, but were significantly lower in the R1R2B300 and R1R2B200 treatments. The highest intercellular CO2concentration, stomatal conductance, and transpiration rate were in the R1R2B300 treatment. The highest photosynthetic rate was in the R1R2B400 treatment, and was related to more compact leaves, thicker and tidier palisade and spongy tissues, and well-developed chloroplasts. In contrast, the seedlings in the R1R2B200 treatment had disordered mesophyll cells, round chloroplasts, and fractured and fuzzy grana lamellae, all of which inhibited plant growth. In conclusion, the seedlings in the R1R2B400 treatment had well-developed leaves, which favored photosynthesis. Compared with the light intensities below 300 μmol m-2 s-1, the light intensity of 400 μmol m-2 s-1 provided by a cembination of red and blue LEDs was beneficial for cultivating strong and healthy rape seedlings in an artificial system. 展开更多
关键词 light intensity rape seedlings mesophyll cell CHLOROPLAST STOMATA photosynthetic characteristics
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Effects of Exogenous Silicon on Photosynthetic Capacity and Antioxidant Enzyme Activities in Chloroplast of Cucumber Seedlings Under Excess Manganese 被引量:13
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作者 FENG Jian-peng SHI Qing-hua WANG Xiu-feng 《Agricultural Sciences in China》 CAS CSCD 2009年第1期40-50,共11页
Effects of silicon on photosynthetic parameters and antioxidant enzymes of chloroplast in cucumber seedlings under excess Mn were studied. Compared with the control, excess Mn significantly inhibited net photosyntheti... Effects of silicon on photosynthetic parameters and antioxidant enzymes of chloroplast in cucumber seedlings under excess Mn were studied. Compared with the control, excess Mn significantly inhibited net photosynthetic rate (Pn), stomatal conductance, as well as the maximum yield of the photosystem II photochemical reactions (Fv/Fm) and the quantum yield of photosysytem II electron transport (Φ PSII), application of Si reversed the negative effects of excess Mn. In the further investigation, it was obtained that application of Si significantly increased the activities of enzymes related with ascorbate-glutathione cycle including ascorbate peroxidase (APX), dehydroascorbate reductase (DHAR) and glutathione reductase (GR) in cucumber chloroplast under excess Mn, this could be responsible for the lower accumulation of H2O2 and lower lipid peroxidation of chloroplast induced by Mn, and resulted in keeping higher photosynthesis. 展开更多
关键词 CUCUMBER excess manganese photosynthesis chlorophyll fluorescence CHLOROPLAST antioxidant enzymes
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