Effect of land use on soil nematode community composition and co-occurrence network relationship

Land use influences soil biota community composition and diversity,and then belowground ecosystem processes and functions.To characterize the effect of land use on soil biota,soil nematode communities in crop land,forest land and fallow land were investigated in six regions of northern China.Generic richness,diversity,abundance and biomass of soil nematodes was the lowest in crop land.The richness and diversity of soil nematodes were 28.8and 15.1%higher in fallow land than in crop land,respectively.No significant differences in soil nematode indices were found between forest land and fallow land,but their network keystone genera composition was different.Among the keystone genera,50%of forest land genera were omnivores-predators and 36%of fallow land genera were bacterivores.The proportion of fungivores in forest land was 20.8%lower than in fallow land.The network complexity and the stability were lower in crop land than forest land and fallow land.Soil pH,NH_(4)^(+)-N and NO_(3)^(–)-N were the major factors influencing the soil nematode community in crop land while soil organic carbon and moisture were the major factors in forest land.Soil nematode communities in crop land influenced by artificial management practices were more dependent on the soil environment than communities in forest land and fallow land.Land use induced soil environment variation and altered network relationships by influencing trophic group proportions among keystone nematode genera.

Application of Bayesian Analysis Based on Neural Network and Deep Learning in Data Visualization

This study aims to explore the application of Bayesian analysis based on neural networks and deep learning in data visualization.The research background is that with the increasing amount and complexity of data,traditional data analysis methods have been unable to meet the needs.Research methods include building neural networks and deep learning models,optimizing and improving them through Bayesian analysis,and applying them to the visualization of large-scale data sets.The results show that the neural network combined with Bayesian analysis and deep learning method can effectively improve the accuracy and efficiency of data visualization,and enhance the intuitiveness and depth of data interpretation.The significance of the research is that it provides a new solution for data visualization in the big data environment and helps to further promote the development and application of data science.

Fluorescent Double Network Hydrogels with Ionic Responsiveness and High Mechanical Properties for Visual Detection

We developed a fluorescent double network hydrogel with ionic responsiveness and high mechanical properties for visual detection.The nanocomposite hydrogel of laponite and polyacrylamide serves as the first network,while the ionic cross-linked hydrogel of terbium ions and sodium alginate serves as the second network.The double-network structure,the introduction of nanoparticles and the reversible ionic crosslinked interactions confer high mechanical properties to the hydrogel.Terbium ions are not only used as the ionic cross-linked points,but also used as green emitters to endow hydrogels with fluorescent properties.On the basis of the “antenna effect” of terbium ions and the ion exchange interaction,the fluorescence of the hydrogels can make selective responses to various ions(such as organic acid radical ions,transition metal ions) in aqueous solutions,which enables a convenient strategy for visual detection toward ions.Consequently,the fluorescent double network hydrogel fabricated in this study is promising for use in the field of visual sensor detection.

Inversion tillage with straw incorporation affects the patterns of soil microbial co-occurrence and multi-nutrient cycling in a Hapli-Udic Cambisol

Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.

Insights into microbiota community dynamics and flavor development mechanism during golden pomfret(Trachinotus ovatus)fermentation based on single-molecule real-time sequencing and molecular networking analysis

Popular fermented golden pomfret(Trachinotus ovatus)is prepared via spontaneous fermentation;however,the mechanisms underlying the regulation of its flavor development remain unclear.This study shows the roles of the complex microbiota and the dynamic changes in microbial community and flavor compounds during fish fermentation.Single-molecule real-time sequencing and molecular networking analysis revealed the correlations among different microbial genera and the relationships between microbial taxa and volatile compounds.Mechanisms underlying flavor development were also elucidated via KEGG based functional annotations.Clostridium,Shewanella,and Staphylococcus were the dominant microbial genera.Forty-nine volatile compounds were detected in the fermented fish samples,with thirteen identified as characteristic volatile compounds(ROAV>1).Volatile profiles resulted from the interactions among the microorganisms and derived enzymes,with the main metabolic pathways being amino acid biosynthesis/metabolism,carbon metabolism,and glycolysis/gluconeogenesis.This study demonstrated the approaches for distinguishing key microbiota associated with volatile compounds and monitoring the industrial production of high-quality fermented fish products.

Environment drives the co-occurrence of bacteria and microeukaryotes in a typical subtropical bay

The co-occurrence of bacteria and microeukaryote species is a ubiquitous ecological phenomenon,but there is limited cross-domain research in aquatic environments.We conducted a network statistical analysis and visualization of microbial cross-domain co-occurrence patterns based on DNA sampling of a typical subtropical bay during four seasons,using high-throughput sequencing of both 18S rRNA and 16S rRNA genes.First,we found obvious relationships between network stability and network complexity indices.For example,increased cooperation and modularity were found to weaken the stability of cross-domain networks.Secondly,we found that bacterial operational taxonomic units(OTUs)were the most important contributors to network complexity and stability as they occupied more nodes,constituted more keystone OTUs,built more connections,more importantly,ignoring bacteria led to greater variation in network robustness.Gammaproteobacteria,Alphaproteobacteria,Bacteroidetes,and Actinobacteria were the most ecologically important groups.Finally,we found that the environmental drivers most associated with cross-domain networks varied across seasons(in detail,the network in January was primarily constrained by temperature and salinity,the network in April was primarily constrained by depth and temperature,the network in July was mainly affected by depth,temperature,and salinity,depth was the most important factor affecting the network in October)and that environmental influence was stronger on bacteria than on microeukaryotes.

Temporal characteristics of algae-denitrifying bacteria co-occurrence patterns and denitrifier assembly in epiphytic biofilms on submerged macrophytes in Caohai Lake,SW China

Denitrifying bacteria in epiphytic biofilms play a crucial role in nitrogen cycle in aquatic habitats.However,little is known about the connection between algae and denitrifying bacteria and their assembly processes in epiphytic biofilms.Epiphytic biofilms were collected from submerged macrophytes(Patamogeton lucens and Najas marina L.)in the Caohai Lake,Guizhou,SW China,from July to November 2020 to:(1)investigate the impact of abiotic and biotic variables on denitrifying bacterial communities;(2)investigate the temporal variation of the algae-denitrifying bacteria co-occurrence networks;and(3)determine the contribution of deterministic and stochastic processes to the formation of denitrifying bacterial communities.Abiotic and biotic factors influenced the variation in the denitrifying bacterial community,as shown in the Mantel test.The co-occurrence network analysis unveiled intricate interactions among algae to denitrifying bacteria.Denitrifying bacterial community co-occurrence network complexity(larger average degrees representing stronger network complexity)increased continuously from July to September and decreased in October before increasing in November.The co-occurrence network complexity of the algae and nirS-encoding denitrifying bacteria tended to increase from July to November.The co-occurrence network complexity of the algal and denitrifying bacterial communities was modified by ammonia nitrogen(NH_(4)^(+)-N)and total phosphorus(TP),pH,and water temperature(WT),according to the ordinary least-squares(OLS)model.The modified stochasticity ratio(MST)results reveal that deterministic selection dominated the assembly of denitrifying bacterial communities.The influence of environmental variables to denitrifying bacterial communities,as well as characteristics of algal-bacterial co-occurrence networks and the assembly process of denitrifying bacterial communities,were discovered in epiphytic biofilms in this study.The findings could aid in the appropriate understanding and use of epiphytic biofilms denitrification function,as well as the enhancement of water quality.

Community composition,co-occurrence,and environmental drivers of bacterioplankton community in surface and 50-m water layers in the subarctic North Pacific

The Western Subarctic Gyre(WSG)is one of the two gyre-systems in the subarctic North Pacific known for high nutrient and low-chlorophyll waters.However,the bacterioplankton in marine water of this area,either in terms of the taxonomic composition or functional structure,remains relatively unexplored.A total of 22 sampling sites from two water layers(surface water,SW and 50-m layer water,FW)were collected in this area.The physiochemical parameters of waters,Synechococcus,and bacterial density,as well as the bacterioplankton community composition and distribution pattern,were analyzed.The nutrient concentrations of DIN,DIP,and DSi,Chl-a concentration,and the average abundance of heterobacteria in FW were higher than those in SW.However,temperature and the average abundance of Synechococcus and pico-eukaryotes were higher in SW.A total of 3269 OTUs were assigned,and 2123OTUs were commonly shared;moreover,similar alpha diversity patterns were observed in both SW and FW.The bacterioplankton community showed significantly obvious correlation with salinity,DIP,DIN,and Chl a in both SW and FW.Proteobacteria,Cyanobacteria,Bacteroidota,Actinobacteriota,and Firmicutes were the main phyla while Synechococcus_CC9902,Psychrobacter,and Sulfitobacter were the dominant genera in each sampling site.Most correlations that happened between the OTUs in the cooccurrence network were positive and inter-module.Higher edges and graph density were found in SW,indicating that more correlations occurred,and the community was more complex in SW.This study provided novel knowledge on the bacterioplankton community structure and the correlation characteristics in WSG.

Genetics Based Compact Fuzzy System for Visual Sensor Network

As a component of Wireless Sensor Network(WSN),Visual-WSN(VWSN)utilizes cameras to obtain relevant data including visual recordings and static images.Data from the camera is sent to energy efficient sink to extract key-information out of it.VWSN applications range from health care monitoring to military surveillance.In a network with VWSN,there are multiple challenges to move high volume data from a source location to a target and the key challenges include energy,memory and I/O resources.In this case,Mobile Sinks(MS)can be employed for data collection which not only collects information from particular chosen nodes called Cluster Head(CH),it also collects data from nearby nodes as well.The innovation of our work is to intelligently decide on a particular node as CH whose selection criteria would directly have an impact on QoS parameters of the system.However,making an appropriate choice during CH selection is a daunting task as the dynamic and mobile nature of MSs has to be taken into account.We propose Genetic Machine Learning based Fuzzy system for clustering which has the potential to simulate human cognitive behavior to observe,learn and understand things from manual perspective.Proposed architecture is designed based on Mamdani’s fuzzy model.Following parameters are derived based on the model residual energy,node centrality,distance between the sink and current position,node centrality,node density,node history,and mobility of sink as input variables for decision making in CH selection.The inputs received have a direct impact on the Fuzzy logic rules mechanism which in turn affects the accuracy of VWSN.The proposed work creates a mechanism to learn the fuzzy rules using Genetic Algorithm(GA)and to optimize the fuzzy rules base in order to eliminate irrelevant and repetitive rules.Genetic algorithmbased machine learning optimizes the interpretability aspect of fuzzy system.Simulation results are obtained using MATLAB.The result shows that the classification accuracy increase along with minimizing fuzzy rules count and thus it can be inferred that the suggested methodology has a better protracted lifetime in contrast with Low Energy Adaptive Clustering Hierarchy(LEACH)and LEACHExpected Residual Energy(LEACH-ERE).

Visualization of flatness pattern recognition based on T-S cloud inference network

Flatness pattern recognition is the key of the flatness control. The accuracy of the present flatness pattern recognition is limited and the shape defects cannot be reflected intuitively. In order to improve it, a novel method via T-S cloud inference network optimized by genetic algorithm(GA) is proposed. T-S cloud inference network is constructed with T-S fuzzy neural network and the cloud model. So, the rapid of fuzzy logic and the uncertainty of cloud model for processing data are both taken into account. What's more, GA possesses good parallel design structure and global optimization characteristics. Compared with the simulation recognition results of traditional BP Algorithm, GA is more accurate and effective. Moreover, virtual reality technology is introduced into the field of shape control by Lab VIEW, MATLAB mixed programming. And virtual flatness pattern recognition interface is designed.Therefore, the data of engineering analysis and the actual model are combined with each other, and the shape defects could be seen more lively and intuitively.

An Automatic Cross-System File Generation System for Biological Network Visualization Tools

In the field of bioinformatics, the size of a biological network is usually very big. Without any help, it’s extremely hard to analyze the network. If it is shown as a visualized picture, things will be easier. So it’s very important to convert the biological network into a picture. However, there are a lot of software tools to be used to visualize the network. They use different file formats and do not support the transfer from one format to another. Sometimes it’s really hard to deal with it. So I analyzed three text file formats of them (“.dl”, “.net” and “.vna”) and developed a program to do this work automatically. The result of execution is very well and the efficiency is also impressive.

AGGREGATE IMAGE BASED TEXTURE IDENTIFICATION USING GRAY LEVEL CO-OCCURRENCE PROBABILITY AND BP NEURAL NETWORK

Classifying the texture of granules in 2D images has aroused manifold research atten-tion for its technical challenges in image processing areas.This letter presents an aggregate texture identification approach by jointly using Gray Level Co-occurrence Probability(GLCP) and BP neural network techniques.First, up to 8 GLCP-associated texture feature parameters are defined and computed, and these consequent parameters next serve as the inputs feeding to the BP neural network to calculate the similarity to any of given aggregate texture type.A finite number of aggregate images of 3 kinds, with each containing specific type of mineral particles, are put to the identification test, experimentally proving the feasibility and robustness of the proposed method.

Visualization and Management Platform with Augmented Reality for Wireless Sensor Networks

Recently a ubiquitous sensor network which collects our environmental information gets increasingly popular, a visualization application is necessary for users to manage complicated wireless networks, however, these applications are developed individually for wireless communication standard or a type of wireless device. Therefore, users are forced to adopt and use the application individually according to the target of the wireless network. In this paper, we propose a visualization platform for wireless network environments using augmented reality technology, and evaluate the effectiveness of the platform. From the result of the evaluation, we have confirmed the proposed platform has availability for visualization and management of wireless networks.

Visual Exploration Research in the Field of Library and Information Based on Co-occurrence Analysis

Towards current modern society,our country’s library and information science is not only rapid development,but it also has won the favor of many researchers in more than a decade of development.Due to new technology elements and methods are widely used in the discipline of library and information science,cause society our country’s library and information science has entered a new stage with the development of information industry.This paper is based on the research theory of co-occurrence analysis,clustering co-occurrence analysis of references,social network co-occurrence analysis from researchers and research institutions of the field of library and information science,to have more precise and in depth research on the research focus of the library and information science,the authors themselves and the research institutions circumstances over the past few years.At the same time,the theory is used to analyze the effects and analysis of accurate data,to ensure that researchers can analyze the theory of library and information science for a long time.

Visualization of Personal Interest Graph from Social Network

The advent of the time of big data along with social networks makes the visualization and analysis of networks information become increasingly important in many fields. Based on the information from social networks, the idea of information visualization and development of tools are presented. Popular social network micro-blog （＇Weibo＇） is chosen to realize the process of users＇ interest and communications data analysis. User interest visualization methods are discussed and chosen and programs are developed to collect users＇ interest and describe it by graph. The visualization results may be used to provide the commercial recommendation or social investigation application for decision makers.

Visualization Analysis Framework for Large-Scale Software Based on Software Network

Large-scale software systems,which are the most sophisticated human-designed objects,play more and more important role in our daily life.Consequently effective analysis for large-scale software has become an urgent problem to be solved with the increasing issues of software security and the continuous expansion of software applications scope.For the characteristics of large scale and complex structure in large-scale software,the traditional software analysis techniques are difficult to be used.With the problem of difficulty in presentation,storage and low efficiency in the process of large-scale software analysis,the visualization analysis framework for large-scale software based on software network,named SoNet,is proposed with the combination of complex network theory and program slicing technique.Constraint logic attributes of the programs will be obtained through source code parsing.Then we will construct a global view by the theory of complex network after extracting software structure and behavior,improving user’s perception of software architecture in a macro perspective.Use case slicing will be realized combined with Redis cluster,and accessibility analysis when given a keyword to be analyzed.We evaluate our prototype implementation on an open source software project named SoundSea in Github,and the results suggest that our approach can realize the analysis for large-scale software.

3-D visual tracking based on CMAC neural network and Kalman filter

In this paper, the Kalman filter is used to predict image feature positionaround which an image-processing window is then established to diminish feature-searching area andto heighten the image-processing speed. According to the fundamentals of image-based visual servoing(IBVS), the cerebellar model articulation controller (CMAC) neural network is inserted into thevisual servo control loop to implement the nonlinear mapping from the error signal in the imagespace to the control signal in the input space instead of the iterative adjustment and complicatedinverse solution of the image Jacobian. Simulation results show that the feature point can bepredicted efficiently using the Kalman filter and on-line supervised learning can be realized usingCMAC neural network; end-effector can track the target object very well.

VSAN:A new visualization method for super-large-scale academic networks

As a carrier of knowledge,papers have been a popular choice since ancient times for documenting everything from major historical events to breakthroughs in science and technology.With the booming development of science and technology,the number of papers has been growing exponentially.Just like the fact that Internet of Things(IoT)allows the world to be connected in a flatter way,how will the network formed by massive academic papers look like?Most existing visualization methods can only handle up to hundreds of thousands of node size,which is much smaller than that of academic networks which are usually composed of millions or even more nodes.In this paper,we are thus motivated to break this scale limit and design a new visualization method particularly for super-large-scale academic networks(VSAN).Nodes can represent papers or authors while the edges means the relation(e.g.,citation,coauthorship)between them.In order to comprehensively improve the visualization effect,three levels of optimization are taken into account in the whole design of VSAN in a progressive manner,i.e.,bearing scale,loading speed,and effect of layout details.Our main contributions are two folded:(1)We design an equivalent segmentation layout method that goes beyond the limit encountered by state-of-the-arts,thus ensuring the possibility of visually revealing the correlations of larger-scale academic entities.(2)We further propose a hierarchical slice loading approach that enables users to observe the visualized graphs of the academic network at both macroscopic and microscopic levels,with the ability to quickly zoom between different levels.In addition,we propose a“jumping between nebula graphs”method that connects the static pages of many academic graphs and helps users to form a more systematic and comprehensive understanding of various academic networks.Applying our methods to three academic paper citation datasets in the AceMap database confirms the visualization scalability of VSAN in the sense that it can visualize academic networks with more than 4 million nodes.The super-large-scale visualization not only allows a galaxy-like scholarly picture unfolding that were never discovered previously,but also returns some interesting observations that may drive extra attention from scientists.

Design of Robotic Visual Servo Control Based on Neural Network and Genetic Algorithm

A new visual servo control scheme for a robotic manipulator is presented in this paper, where a back propagation （BP） neural network is used to make a direct transition from image feature to joint angles without requiring robot kinematics and camera calibration. To speed up the convergence and avoid local minimum of the neural network, this paper uses a genetic algorithm to find the optimal initial weights and thresholds and then uses the BP Mgorithm to train the neural network according to the data given. The proposed method can effectively combine the good global searching ability of genetic algorithms with the accurate local searching feature of BP neural network. The Simulink model for PUMA560 robot visual servo system based on the improved BP neural network is built with the Robotics Toolbox of Matlab. The simulation results indicate that the proposed method can accelerate convergence of the image errors and provide a simple and effective way of robot control.