Responses of soil inhabiting nitrogen-cycling microbial communities to wetland degradation on the Zoige Plateau,China

The wetlands on the Zoige Plateau have experienced serious degradation,with most of the original marsh being converted to marsh meadow or meadow.Based on the 3 wetland degradation stages,we determined the effects of wetland degradation on the structure and relative abundance of nitrogencycling(nitrogen-fixing,ammonia-oxidizing,and denitrifying) microbial communities in 3 soil types(intact wetland:marsh soil;early degrading wetland:marsh meadow soil;and degraded wetland:meadow soil) using 454-pyrosequencing.The structure and relative abundance of nitrogen-cycling microbial communities differed in the 3 soil types.Proteobacteria was the predominant phylum in most soil samples but the most abundant soil nitrogenfixing and denitrifying microbial bacteria differed at the class,order,family,and genus levels among the 3soil types.At the genus level,the majority of nitrogenfixing bacterium sequences related to Bradyrhizobium were from marsh and marsh meadow soils;whereas those related to Geobacter originated from meadow soil.The majority of ammonia-oxidizing bacterium sequences related to Nitrosospira were from marsh(except for the 40-60 cm layer),marsh meadow and meadow soils;whereas those related to Candidatus Solibacter originated from 40-60 cm layer of marsh soil.The majority of denitrifying bacterium sequences related to Candidatus Solibacter and Anaeromyxobacter were from marsh and meadow soils;whereas those related to Herbaspirillum originated from meadow soil.The distribution of operational taxonomic units(OTUs)and species were correlated with soil type based upon Venn and Principal Coordinates Analysis(PCoA).Changes in soil type,caused by different water regimes were the most important factors influencing compositional changes in the nitrogen-fixing,ammonia-oxidizing,and denitrifying microbial communities.

Phylogenetic Analysis of Anaerobic Co-Digestion of Animal Manure and Corn Stover Reveals Linkages between Bacterial Communities and Digestion Performance

Over 3 million tons of manures are produced annually in the United States and pose environmental and health risks if not remediated. Anaerobic digestion is an effective method in treating organic wastes to reduce environmental impacts and produce methane as an alternative energy. Previous studies suggested that optimization of feed composition, hydraulic retention time, and other operational conditions can greatly improve total solids removal and increase methane productivity. These environmental factors improve functionality by altering the microbial community structure but explicit details of how the bacterial community shifts are poorly understood. Our investigations were conducted to investigate the relationship between environmental factors, microbial community structure and bioreactor efficiency by using metagenomic analysis of the microbial communities. Our results indicated that the bioreactor with the greatest methane production, digestion efficiency and reduced levels of E. coli/Shigella had a distinctive community structure at the genus level with unique and abundant uncultivated strains of Bacteroidetes. Moreover the same bioreactor was enriched in Aminomonas paucivorans and Clostridia populations that can utilize secondary metabolites produced during cellulose/hemicellulose degradation to generate hydrogen and acetate. Hence specific digestion conditions that enrich for these populations may provide a route to the optimization of co-digestion systems and control the variability in reactor performance.

Effects of multiple but low pesticide loads on aquatic fungal communities colonizing leaf litter

In the first tier risk assessment（RA） of pesticides, risk for aquatic communities is estimated by using results from standard laboratory tests with algae, daphnids and fish for single pesticides such as herbicides, fungicides, and insecticides. However, fungi as key organisms for nutrient cycling in ecosystems as well as multiple pesticide applications are not considered in the RA. In this study, the effects of multiple low pesticide pulses using regulatory acceptable concentrations（RACs） on the dynamics of non-target aquatic fungi were investigated in a study using pond mesocosm. For that, fungi colonizing black alder（Alnus glutinosa） leaves were exposed to multiple, low pulses of 11 different pesticides over a period of 60 days using a real farmer＇s pesticide application protocol for apple cropping.Four pond mesocosms served as treatments and 4 as controls. The composition of fungal communities colonizing the litter material was analyzed using a molecular fingerprinting approach based on the terminal Restriction Fragment Length Polymorphism（t-RFLP） of the fungal Internal Transcribed Spacer（ITS） region of the ribonucleic acid（RNA） gene（s）. Our data indicated a clear fluctuation of fungal communities based on the degree of leaf litter degradation. However significant effects of the applied spraying sequence were not observed. Consequently also degradation rates of the litter material were not affected by the treatments. Our results indicate that the nutrient rich environment of the leaf litter material gave fungal communities the possibility to express genes that induce tolerance against the applied pesticides. Thus our data may not be transferred to other fresh water habitats with lower nutrient availability.